LOC118938912


Basic Information

Item Value
gene id LOC118938912
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 25806674 ~ 25820021 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036307.1
TTACATGCGCACCTGGCAGATAAGCATGGGTATAAAATGTTTGGGCTTAGCTTTGCTTGGGTCCTCAACATACAAACAGCTCATTGTTCAACCCTAAAGACGCAACTGGTTTCTCTCTTCTTCACCTCCGCTTCTTTGTCACTGACTTCACACCTCTAGATGGCCGGGTAGGTGTGGAGCCGGAGACAGCAGGGAtccggctggatgaaccagcttcagagggaGATGGACACCTAGACATTGGCGGCTCATAATCAGAATCACTGCCAATcccccactccaacatccaaagcatcggcctccaccacaaactgacaGGACGGGTGAGGATGAACCAAaatgggagctgtggtgaagtGGTGCTTGAGGTCCCGGAACTCccggtcagcagctggggaccacGTGAACGTAACCTTGGaagagACCCAGCACCAATCCAGATCCCGGTTTCCAGCAACAGACCACCAGACAAGGCAGAGGGACCAAACACCAGACCTTCACCCGGAGCGAGCAGTCCACAGGGGAGTGCCACAATTGACCTCCGGTTCTAGGTCTCCCTTGCAGGTCTGCTTGCTCCTCAGGTTGTCCTTCCTCCCATCTGCAGACCCAGCACCAACCCCTGGTTTGCCAGCCCTGGTATCAGCATGATCTCTAACCCAGGTTATCCCAGTACCAGTCCCAACACCAGCACCAACCCTGGACACAGCCCAGACCAACCACAACTGCCACCTTCATCCAGCAACTGCCAGCTCAGACCCCACCCCTCCCCCTACCtcacacaaagacacaaacacaccatcaACCACTCCACCAGAACAAACCTGACTGACAAATGGACAGACTGATGATTGTTATTTGTACAAATGCATTTGTTTGTTGTTTATTAGTAAAAGTTTGTTTttcttttgatttgattaatttaAGTTGGCTTGATTATTTATTGGTtgaattgttttgtattttttaagtTGAATTACATTTGATTAGAAACCTTGcctaggagtgtgaaggtgaacggaaaagcACTGGCGCAATGAACCACCCTTGatctctctgcctggccggttcaccTGTcgccactgggattctctgcctcaaaccctattacatgggctgagtcactggcttactggtgctcttccatgccatccctaggaggggtgcgtcacttgagtgggttgagtcactgaggtgatcttcctgtccaggttttattaataaaaaaatacaattttcctaccactttgacattacataaTATTTTGGGTTACAAAAAATGACAAATCAATTTTGATCCTCCTCTACAATAAAAACATGAAG
>XR_005036306.1
GCGCACCTGGCAGATAAGCATGGGTATAAAATGTTTGGGCTTAGCTTTGCTTGGGTCCTCAACATACAAACAGCTCATTGTTCAACCCTAAAGACGCAACTGcccccactccaacatccaaagcatcggcctccaccacaaactgacaGGACGGGTGAGGATGAACCAAaatgggagctgtggtgaagtGGTGCTTGAGGTCCCGGAACTCccggtcagcagctggggaccacGTGAACGTAACCTTGGaagagACCCAGCACCAATCCAGATCCCGGTTTCCAGCAACAGACCACCAGACAAGGCAGAGGGACCAAACACCAGACCTTCACCCGGAGCGAGCAGTCCACAGGGGAGTGCCACAATTGACCTCCGGTTCTAGGTCTCCCTTGCAGGTCTGCTTGCTCCTCAGGTTGTCCTTCCTCCCATCTGCAGACCCAGCACCAACCCCTGGTTTGCCAGCCCTGGTATCAGCATGATCTCTAACCCAGGTTATCCCAGTACCAGTCCCAACACCAGCACCAACCCTGGACACAGCCCAGACCAACCACAACTGCCACCTTCATCCAGCAACTGCCAGCTCAGACCCCACCCCTCCCCCTACCtcacacaaagacacaaacacaccatcaACCACTCCACCAGAACAAACCTGACTGACAAATGGACAGACTGATGATTGTTATTTGTACAAATGCATTTGTTTGTTGTTTATTAGTAAAAGTTTGTTTttcttttgatttgattaatttaAGTTGGCTTGATTATTTATTGGTtgaattgttttgtattttttaagtTGAATTACATTTGATTAGAAACCTTGcctaggagtgtgaaggtgaacggaaaagcACTGGCGCAATGAACCACCCTTGatctctctgcctggccggttcaccTGTcgccactgggattctctgcctcaaaccctattacatgggctgagtcactggcttactggtgctcttccatgccatccctaggaggggtgcgtcacttgagtgggttgagtcactgaggtgatcttcctgtccaggttttattaataaaaaaatacaattttcctaccactttgacattacataaTATTTTGGGTTACAAAAAATGACAAATCAATTTTGATCCTCCTCTACAATAAAAACATGAAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036307.1 False 1320 mRNA 0.48 4 25806674 25820021
XR_005036306.1 True 1151 mRNA 0.48 3 25806680 25820021
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110489875 LOC106590201 coding upstream 103283 25665723 ~ 25703391 (+)
zgc:111976 LOC106590202 coding upstream 144006 25652738 ~ 25662668 (+)
rbis cssa29h8orf59 coding upstream 830152 24968304 ~ 24976522 (+)
LOC110489866 tmem241 coding upstream 929950 24869606 ~ 24876724 (+)
LOC110489863 sdcbp coding upstream 965711 24836607 ~ 24840963 (+)
LOC118938913 NA coding downstream 31799 25851820 ~ 25853297 (+)
LOC110489881 LOC106590196 coding downstream 115156 25935177 ~ 26048644 (+)
LOC110489887 LOC106590191 coding downstream 724674 26544695 ~ 26564656 (+)
LOC110489891 LOC106590187 coding downstream 936754 26756775 ~ 26759201 (+)
LOC110489893 LOC106590186 coding downstream 941919 26761940 ~ 26810579 (+)
G1273671 NA non-coding upstream 20287 25783647 ~ 25786387 (+)
G1273622 NA non-coding upstream 61327 25686844 ~ 25745347 (+)
G1273640 NA non-coding upstream 92031 25711469 ~ 25714643 (+)
G1273611 NA non-coding upstream 128820 25671660 ~ 25677854 (+)
G1273586 LOC106590203 non-coding upstream 193267 25612110 ~ 25613407 (+)
G1273718 NA non-coding downstream 36365 25856386 ~ 25856621 (+)
G1273722 NA non-coding downstream 42934 25862955 ~ 25863375 (+)
G1273735 NA non-coding downstream 63380 25883401 ~ 25883614 (+)
G1273741 NA non-coding downstream 71781 25891802 ~ 25892514 (+)
G1273753 NA non-coding downstream 89325 25909346 ~ 25909545 (+)
G1272672 LOC106590208 other upstream 843633 24959932 ~ 25027501 (+)
chchd7 chch7 other upstream 1043709 24759852 ~ 24762965 (+)
G1272573 NA other upstream 1062869 24741879 ~ 24787896 (+)
G1274765 NA other downstream 544257 26364278 ~ 26365146 (+)
G1274830 NA other downstream 619990 26440011 ~ 26442387 (+)
kif9 kif9 other downstream 1140770 26960749 ~ 26974049 (+)
G1275572 NA other downstream 1281288 27101309 ~ 27102027 (+)
G1276288 NA other downstream 2033597 27853618 ~ 27854013 (+)

Expression

LOC118938912 Expression in all Baseline Samples

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LOC118938912 Expression in each Bioproject

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LOC118938912 Expression in each Sample
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Co-expression Network