cdh19 (LOC106590195)



Basic Information


Item Value
gene id cdh19
gene name LOC106590195
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 26092332 ~ 26114459 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021562840.2
TTGTTCTTTCAAGGGAagtttgagaaagagagaaaaagggaagaaaagaagaagaagaaaggggGAGGTCGTCAGTGGAAGGGATTACGCATTGTGAGAACCATGTCCATTTGCTGCTACTATTATTGGGTCTGAAAAGCAGTATCTGCAGTACCAGGGCCCTTAGTTAACCAGACTGTGTGTTTTCTTCCACACCATGATGATCTCTGTTGGTAGCAGCTGTTGAAGAGTGGCTTAAAGAGAGAACAATCACGCATGAAGAATGACTGTCTACAGCAACAGGCCAACAGCAGGGTGGCCAGCCACCTCTCTGAGGTCCTCGCcatatcactgtgtctctctgATGCTCAGAGGAACCTTTTTAATGAACCAGTGACATCTGTACCTCTGTGCACTAACCACGGGGAGAGGCTCAGAAAATGGATCAGCGGACTATCACAATGCGGTGTCCTTGTCTGCTGGACTTAGTTATTATCCTGTCCTTGACATCATGCTGCATGTTGAGTGAGGCGAGAGCTCCACACAGTCTGGAGCCCGACCACCAGCTTGGCCAGGGGTCTCCCACCACAGCTCTACACCAGAGACTCAGACGAGGCTGGATCTGGAAACAGATTTTTGTCCCAGAGGAGGACCCCACTCCAAGCGTGATTGGCCAGCTAAAATCAGACTACGACAGAGGGGATTTCTCTATCAAGTATATACTGTCGGGGGAAGGTGCAGGGGAGATGTTTGAGATTAATGAATATTCAGGAGAGATCCGTACATTGCAGAAGCTGGACCGCGAAGAGAAGGCCTTCTACCTCCTGCAGGCTCATGCCCTTGCTCGGAAGTCCAACGAACCCGTGGAGCCCCAGTCAGAGTTCATCATCAAGGTCCAAGACATCAACGACAACATCCCCCAGTTCCAGAACGAGCCCTATGTCTCCAGCATCCCTGAGATGTGTCCCATGGGGACTATCGTGGCCCAGGTGACAGCTACAGATGCTGACGATCCCCTGTTCGGAAACAATGCCAAGCTCATCTACTCCATCCTACAGGGGGAGCCCTACTTCTCTGTGGAGCCCAAGACAGGCATCATCATGACCTCGATGGCCAACATGGACAGGGAGGCTAGGGACCAGTATCTGGTGGTGGTGCAGGTGAAGGATATGCTGGGACTGAGCGGTGGTTACTCTGCTTCCACCACTGTCACCATCAGCCTCACGGACGTCAATGACAACGGACCCACCTTCCAGCACAACCTTTACACCTTTGCTGTTCTGGAGTCTGCTGCGGTGGGCACAACCGTGGGCAGGATCATGGCAGACGATGGTGATGTGGGCATCAACGCCAGGATGAACTACAGTCTAGAGGACCTAGAGGAGAGCGCCACCTTCAAAATCCAAACGGATCCAGTCACACAGGAAGGAGTGGTCCTCCTGGCCAAGcCTCTGGACTATGAGAGCAAGCGACGGTTCGTAATGTCTGCGAAGGCTGTCAACGATCACATAGACACCCGCTTTCTGAGCTACAACGAGTTTCAGGACAGGACGACCCTAAAGATCGTCGTCGAGGACGTGGATGAGCCCCCTATCTTCATGGCACCCGATTATGAGTGGAAGGTTCTGGAAAATATGGTGGCGGGGACCGTGGTTGGTACCGTTAGCGCCAGAGACACTGATGCAATCAACAACCCAATCAGATATTCCATTGACAAAAGCAGTGATATCACAAAAGCTTTCAAAATAGACCCAAACAATGGGACTGTAACTGTTGCGAAACCTTTGGACCGTGAGGAAGCAGCCTGGCACAATCTAACCATAAATGCCAAGGAAACAAAGCAGAACCATCTATCCTCATCTGTGGTGGTGTTCATCAAAGTGCTGGACATAAACGACAATGCGCCAATGCTTGCCAGAGAGTACCAGCCATATATCTGTGAGGGCACACAGTCAGGAGAGCTCATCCAGCTGATCAACGCTGTGGATCTGGACGACCCTGTGGAGGGACACCACTTCTACTTCTCCATGGTCCCTGACAAGAACATCAACCCTAATTTCACAATCAGGGACAACCAAGACAACAGTGCTAGCATCCTGGCACGGCGGAGCTCATTCACCCGTAGGGACCGTGCCCACTACCTGCTGCCCATGGTGGTGGCGGACAGTGGCTCCCCAGCCCTCTCCAGTACCAGTACCCTGACCATCAGCGTATGCAGCTGTCAGCCCGCCGGACACTGCCCCACAGGCGGGGTGGAGGCCCTGGCCATCTCTATTGGGGTCAGCCTACAGACCCTGCTTGGCTTCCTGGTCTGCCTGGCAACACTCACAGTGCTGGGCATTGTAATGCTGATGCTGAGGAGACACCGGAGGAAACAGCTGGAGGGGCTGGGGAGAgcggagaaggagaaggagctgGAGCTGCCTAAGGGGGTCTCAGAGAAGGTGCTGCACTACGGAGAAATAGGAGGCGGAGGAGGGGGTGACCTGGGGGGATTCTGTCAGCCTGCTGTCCCCCTTCGTCCCCACCCCCGCAGGAGGGACAGGAAGCTCCGCAGAGAGGAGGTGGCAGCCAGTATCAGAATGTCGATGTCTCTCCGCCACTCCCTCCTCATCGGCCCCGAGGACGATGTCTTTAAACAGTTCATCATGGACAGGCTAAATGAAGCAGATCAGGACCCCTACGTGCCGCCATTTGACTGCCTGAAGACCTACGCCTTCGAGGGCACAGGGTCGCCCACGGGGTCCATTAGCTCCCTAGAGTCATGGGACTTTGTGGATGCTGACCAATGTCCCCGGGACCCCGGATCACGCCTTGTCAGACTGACTCTCTGGCATGGGGGAGCGGAAGAGGAGACAACCTTCTGAACGGCTAACAttggttttacatttttttatttaattaatttaacgTAATAACATATATAATAGTACAGCACATccctgaactcaattttgacaTCCTGATGGAAGAGACAAATAAGTTCCTGTTTTCTTCCCCCGTATGGTTGAAAACAGTGGAGCTAGCTGTAATAAATATTATCAGTGTTATGACAGTTATATGTTTTTGTTGAACAGGCAGTTTCTTGATATTTTTTTAACAGTATTTAAATCAACATAACTTTCTATACGTGACCTCATTCTGCATTAGTTCTAAAGATGGGTAACACATTCTAGTATTTGAAccttcatgacagtgtcataagCGCATCATAAGTTTCTTGACACATGCCAGAACTTTCTTGGCAGATGAATTAGATAGGACCTGTAGCTACACAGCCAATTCTCCAGTGTGAGAAAAACCAAATGAACACTGAGAGTGTTACATCAACACTTAAAGTGGTCAGTCTGTGGAACAGTGTTAAAATaacacactgcttagtgtaaaTCCTTATTCCAATATTTCCCAGGGTGCCTTGTCTTTCGAGTAAATTGTatagttaccacccatgactgtatttgttagtgacagagacatggttgttgtatTCATCCATTTTTGGTCCTATAGGCATCCAAGTGACATCCTATGCAAATATGTTATAAAAAGTTATCTTGAACACAATAGCATACATATAtcataaggccttattttgagaGTTTCACCCTAATACAAGTGCCTGAAAGTCCTACACATCGCTTTAAACCAAAACcacgcccatcattatcatattgtttgtttcaatatctgtttgtggatgtacattgattgattgattaattaattaatcttatgctactcaAATATGAAACCACAAacattttctaaactaatccaatatgTTACTTGGGCTTATTGCACCCCTAGGGAGTGTCATGGCTTAGTTTTTCCCAACCAGTTATTCTTAATCCATTTTGAGGGTGACAAGAAAATGCAACAGTTGGATATCCCCacactggctggattccaataggaattacacacaCTTTGCAAGCcaacataatgtgacttgcatacctaatgtggcctgtaaaccatgagTTCCAGGCCATTGCATTACACACTCATAAAAGGTTGTCACTGTAGTTCAagagtgtcaaactcattccatggagagcctagtgtctgcaggtttttctTTTTTCCTCTCAATAAAGCCCTACACAACCAAgtgtggggagttccttactaattagtgaccttaattcatcaagtacaagggaggagcgaaaacccacagacaccGAGTTTGTACCCTGTAAGGCAGAACTCAGTatcggtagcccctgtatatagccttgttattgttagtttattgtgttccttttttaaaaactttttttacttgagtttatttagtaaatattttatcaactctatttcttgaactgtttaaaaaaaaatagaataaaatacatttacccctttttcttcccattttgtggtatccaattggtagttacagtcttgtcttatCACTCCAAGTCCCATACGGACACaagagaggcaaaggtcaagagccgtgcgtcctccaaaacacgacccaaccaagccacactgctttttGATAtaatgcccacttaacctggaagccagccacaccaatgtgtctgaggaaa

Function


NR:

description
cadherin-7-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021562840.2 True 4538 mRNA 0.48 12 26092332 26114459

Neighbor


gene id symbol gene type direction distance location
LOC110489880 LOC106590197 coding downstream 291080 25786208 ~ 25801252 (-)
LOC110489878 LOC106590198 coding downstream 317391 25770924 ~ 25774941 (-)
LOC110489879 LOC106590199 coding downstream 323296 25746689 ~ 25769036 (-)
LOC110489876 LOC106590200 coding downstream 355454 25717772 ~ 25736878 (-)
ralaa LOC106590204 coding downstream 445817 25620868 ~ 25646515 (-)
trnaa-ugc-65 NA coding upstream 10282 26124741 ~ 26124814 (-)
LOC110489883 LOC106590194 coding upstream 132683 26247142 ~ 26252430 (-)
LOC110489884 tmx3 coding upstream 325536 26439995 ~ 26506930 (-)
pxdc1b pxdc1 coding upstream 399220 26513679 ~ 26528616 (-)
LOC110489888 gli3 coding upstream 451892 26566351 ~ 26694581 (-)
G1274561 NA non-coding downstream 1895 26090043 ~ 26090437 (-)
G1274548 NA non-coding downstream 26100 26065954 ~ 26066232 (-)
G1274532 LOC106590196 non-coding downstream 43733 26046058 ~ 26048599 (-)
G1274529 NA non-coding downstream 49244 26042849 ~ 26043088 (-)
G1274528 LOC105006661 non-coding downstream 49719 26042370 ~ 26042613 (-)
G1274568 NA non-coding upstream 415 26114874 ~ 26115075 (-)
G1274595 NA non-coding upstream 56711 26171170 ~ 26177357 (-)
G1274596 NA non-coding upstream 58411 26172870 ~ 26179247 (-)
G1274648 NA non-coding upstream 127003 26241462 ~ 26241722 (-)
G1274649 NA non-coding upstream 128092 26242551 ~ 26242767 (-)
G1271421 NA other downstream 2363393 23713355 ~ 23728939 (-)
G1269265 NA other downstream 4288980 21802687 ~ 21803352 (-)
G1268555 LOC106590243 other downstream 5132243 20958372 ~ 20960089 (-)
G1267452 NA other downstream 5801659 20290350 ~ 20290673 (-)
G1275015 NA other upstream 397066 26511525 ~ 26512075 (-)
G1275016 LOC106590191 other upstream 440509 26554968 ~ 26562033 (-)
LOC110489892 NA other upstream 619754 26733490 ~ 26743932 (-)
G1275434 LOC106590185 other upstream 722861 26837320 ~ 26841026 (-)

Expression



Co-expression Network