pxdc1b (pxdc1)


Basic Information

Item Value
gene id pxdc1b
gene name pxdc1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 26513679 ~ 26528616 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562844.2
gagaggagtcaACTTCTGCGAGGGGAGGAAACCGACGGATATTTTTCGCCTGAGCGACAAAAGCCGTCAACTCTGGAATCAGTGTGCAAGATGCATCCTCTAAAGGCAAACGTCGACAAACTGTCAGGGGATTAAAGCCTTGAAGAACAGGACATCGAATATGCAATTCTTTTGCATTCAGTTCTACGCATGAAGTTAATCAGAAGACTCGTAGAAGAACAAATGCTGGACTGACTGCTGAGGAATGGCATCGGCGATATTCGAGGGGACGTCTCTGGTCAACATGTTTGTCAAGGATTGCTGGGTGAACGGGATCCGGAGACTGATCATAAATCagcgaggagaggaagaagaattCTACGAGATCAGAACCGAGTGGTCAGACAGAAACGTTTTGTATTTGCACAGGAGTTATTCCGATTTTGGGAGATTGTTCAAAAGACTGGTTGAATCATTCCCTGAGGACAGAAGAGCTCTCTCCAAGTCGCCGCTTATCGAAGGTCTGGTTAAGATTAAAGAGGCCAGTGACATTGAGCTGAAACTAAATGAGGTGGAGAAGCTACTGAAGAATGCAATCAACATGCCATGGAAGTATTCTAGGTCAGAGGTGGTGTTGACATTCTTTGAGCGATCACCGCTGGACCAAGTGCTGAAAAATGACAACGTCCACAAGATCCAGCCATGCTTCCAGAGTCCATACAAGATATCAGAGATCATGCGTTCcaatggcttctgtctggccaacaCTGAGACAATCGTGTTTGATGAGAGTCTGCCACAGGACGCAGAGAGACCCTCATCCACTgactctgctgctggctctgcaGAACACCTGTACGAGGATGGCAGGGAGTTCCTGACGGTGGAACCAGACATCAGTGACGATGACTCCGATGCCTACGTCACAAACCTGTCTTACTACCATCTGGTCCCCTTTGAGACGGACATCCTGGAATGAGGAGCCAAAATGGCTGACGGTTAGCATCACTGCCTGCTCAGATGCTGTCAGAAACCAACCCATGTCATGTGACCTAGCTGTGGACAGCTTTGTCCAGCATGTTGGCCACAAATGTTACAGTAGCTGCACAACTTCACCGATTAACTTTGCTACTGCTGCTTAAAGGCCAACGTTTGTCATGGCAGCTTTGTCTCTGTCGAATCGGAGAGCAGATCCTGGGGTTCAGCGGCTGTatggacagacatacacacagactgtAGTATTACTCACAGCAAGATTGTATATAGAGAGATTTAATATCACTGGCTTACAAAGTCCAATGTCTGTGATATCACCAGTGTGCCTCGTCCTCTATCCTCAAGATGTGGTTATAAGGAAATAAGGAGATTGCCCATTTCTTGCTtcctgtgtcctctctcctctacaatTGTGCATTTTAGTTTTCTTTGGGATTGAACTTGGTGTACTTCATAGAACTGTGTTCAGTATCAGCCTTAAACTGCAGTCTTGTCATTACAACCAGTATTACGAAAGATTATTGTTTTATGTGGAGTGATAGCTTGACTTTTCTAATTGGGATTGAATGGGAAATTAACTTTTTTTTGGTTCAATGTGACTTttcctcaccacaccacacctatACCTACCACACCTATATGTTAGGACGACAGGTTAGGGATGTTATTGTGTTCAAAACATCAAATCGGAACACTACATCACTGTATGAATGACAGTACCAGATTGGTTTGAGTAGCAAAAATTGAACAGTTGCGTAATCTTCGTCTAGGGGATTGTTATCATGTGCATAGTGTACGCAAGCAGTGTTTTGCTGGTTCAAGCAAGGCCATGTCAGACCCTGTATTATGCTGTATAGGCTACTGTAATTCCACAACTCAGTCCAACAGCTGACTATAGTCTCTGTGTGGGAGTCGGCAGCGTAGCCAGCCACTGGAGAAACAAATATTCTCTGTTTCTAAAGATAACAAATGACAATGTTGTGTGGAAAACCACTATAAGGGAATTTAGGCCAACACTGGATTTTTCCTCTTCCTGTTGTTTGGCAAATAAACATCAGTTTAAACACAGCCACAACATGATTTCCCCAATATCACTAAATAAGACATCATTTGGACACCAAACATGTGGGAATGGCACATTTGAAAATATGGCATGCCCCAACATGGTTTCTGTCCACATTTCAAGTCAAATTAAAgatgaaaaaaacaaaa
>XM_021562843.2
gagagaggagtcaACTTCTGCGAGGGGAGGAAACCGACGGATATTTTTCGCCTGAGCGACAAAAGCCGTCAACTCTGGAATCAGTGTGCAAGATGCATCCTCTAAAGGCAAACGTCGACAAACTGTCAGGGGATTAAAGCCTTGAAGAACAGGACATCGAATATGCAATTCTTTTGCATTCAGTTCTACGCATGAAGTTAATCAGAAGACTCGTAGAAGAACAGGTGGGCAATGTTATTCCAAAGTCCATGACTTCACTCCAACGTCCCACTCCTTCTCAGAATGCTGGACTGACTGCTGAGGAATGGCATCGGCGATATTCGAGGGGACGTCTCTGGTCAACATGTTTGTCAAGGATTGCTGGGTGAACGGGATCCGGAGACTGATCATAAATCagcgaggagaggaagaagaattCTACGAGATCAGAACCGAGTGGTCAGACAGAAACGTTTTGTATTTGCACAGGAGTTATTCCGATTTTGGGAGATTGTTCAAAAGACTGGTTGAATCATTCCCTGAGGACAGAAGAGCTCTCTCCAAGTCGCCGCTTATCGAAGGTCTGGTTAAGATTAAAGAGGCCAGTGACATTGAGCTGAAACTAAATGAGGTGGAGAAGCTACTGAAGAATGCAATCAACATGCCATGGAAGTATTCTAGGTCAGAGGTGGTGTTGACATTCTTTGAGCGATCACCGCTGGACCAAGTGCTGAAAAATGACAACGTCCACAAGATCCAGCCATGCTTCCAGAGTCCATACAAGATATCAGAGATCATGCGTTCcaatggcttctgtctggccaacaCTGAGACAATCGTGTTTGATGAGAGTCTGCCACAGGACGCAGAGAGACCCTCATCCACTgactctgctgctggctctgcaGAACACCTGTACGAGGATGGCAGGGAGTTCCTGACGGTGGAACCAGACATCAGTGACGATGACTCCGATGCCTACGTCACAAACCTGTCTTACTACCATCTGGTCCCCTTTGAGACGGACATCCTGGAATGAGGAGCCAAAATGGCTGACGGTTAGCATCACTGCCTGCTCAGATGCTGTCAGAAACCAACCCATGTCATGTGACCTAGCTGTGGACAGCTTTGTCCAGCATGTTGGCCACAAATGTTACAGTAGCTGCACAACTTCACCGATTAACTTTGCTACTGCTGCTTAAAGGCCAACGTTTGTCATGGCAGCTTTGTCTCTGTCGAATCGGAGAGCAGATCCTGGGGTTCAGCGGCTGTatggacagacatacacacagactgtAGTATTACTCACAGCAAGATTGTATATAGAGAGATTTAATATCACTGGCTTACAAAGTCCAATGTCTGTGATATCACCAGTGTGCCTCGTCCTCTATCCTCAAGATGTGGTTATAAGGAAATAAGGAGATTGCCCATTTCTTGCTtcctgtgtcctctctcctctacaatTGTGCATTTTAGTTTTCTTTGGGATTGAACTTGGTGTACTTCATAGAACTGTGTTCAGTATCAGCCTTAAACTGCAGTCTTGTCATTACAACCAGTATTACGAAAGATTATTGTTTTATGTGGAGTGATAGCTTGACTTTTCTAATTGGGATTGAATGGGAAATTAACTTTTTTTTGGTTCAATGTGACTTttcctcaccacaccacacctatACCTACCACACCTATATGTTAGGACGACAGGTTAGGGATGTTATTGTGTTCAAAACATCAAATCGGAACACTACATCACTGTATGAATGACAGTACCAGATTGGTTTGAGTAGCAAAAATTGAACAGTTGCGTAATCTTCGTCTAGGGGATTGTTATCATGTGCATAGTGTACGCAAGCAGTGTTTTGCTGGTTCAAGCAAGGCCATGTCAGACCCTGTATTATGCTGTATAGGCTACTGTAATTCCACAACTCAGTCCAACAGCTGACTATAGTCTCTGTGTGGGAGTCGGCAGCGTAGCCAGCCACTGGAGAAACAAATATTCTCTGTTTCTAAAGATAACAAATGACAATGTTGTGTGGAAAACCACTATAAGGGAATTTAGGCCAACACTGGATTTTTCCTCTTCCTGTTGTTTGGCAAATAAACATCAGTTTAAACACAGCCACAACATGATTTCCCCAATATCACTAAATAAGACATCATTTGGACACCAAACATGTGGGAATGGCACATTTGAAAATATGGCATGCCCCAACATGGTTTCTGTCCACATTTCAAGTCAAATTAAAgatgaaaaaaacaaaa

Function

symbol description
pxdc1 Predicted to enable phosphatidylinositol binding activity.

NR:

description
PX domain-containing protein 1

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0035091 phosphatidylinositol binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562844.2 False 2187 mRNA 0.44 6 26513679 26528614
XM_021562843.2 True 2247 mRNA 0.44 6 26513679 26528616

Neighbor

gene id symbol gene type direction distance location
LOC110489884 tmx3 coding downstream 6749 26439995 ~ 26506930 (-)
LOC110489883 LOC106590194 coding downstream 261249 26247142 ~ 26252430 (-)
trnaa-ugc-65 NA coding downstream 388865 26124741 ~ 26124814 (-)
cdh19 LOC106590195 coding downstream 399220 26092332 ~ 26114459 (-)
LOC110489880 LOC106590197 coding downstream 712427 25786208 ~ 25801252 (-)
LOC110489888 gli3 coding upstream 37735 26566351 ~ 26694581 (-)
LOC110489889 LOC106590189 coding upstream 191171 26719787 ~ 26723716 (-)
LOC110489890 NA coding upstream 196839 26725455 ~ 26733092 (-)
LOC110489892 NA coding upstream 205735 26733490 ~ 26743932 (-)
LOC110489898 LOC106590183 coding upstream 414106 26941314 ~ 26952371 (-)
G1274974 NA non-coding downstream 43784 26397313 ~ 26469895 (-)
G1274768 NA non-coding downstream 145154 26368246 ~ 26368525 (-)
G1274757 NA non-coding downstream 155277 26357907 ~ 26358402 (-)
G1274755 NA non-coding downstream 156492 26356958 ~ 26357187 (-)
G1274707 NA non-coding downstream 200305 26313099 ~ 26313374 (-)
G1275013 NA non-coding upstream 33967 26562583 ~ 26564647 (-)
G1275055 NA non-coding upstream 42990 26571606 ~ 26571883 (-)
G1275056 NA non-coding upstream 43307 26571923 ~ 26572184 (-)
G1275120 NA non-coding upstream 157406 26686022 ~ 26687096 (-)
G1275015 NA other downstream 1604 26511525 ~ 26512075 (-)
G1274532 LOC106590196 other downstream 465155 26046058 ~ 26048599 (-)
G1271421 NA other downstream 2784740 23713355 ~ 23728939 (-)
G1269265 NA other downstream 4710327 21802687 ~ 21803352 (-)
G1268555 LOC106590243 other downstream 5553590 20958372 ~ 20960089 (-)
G1275016 LOC106590191 other upstream 26352 26554968 ~ 26562033 (-)
G1275434 LOC106590185 other upstream 308704 26837320 ~ 26841026 (-)

Expression


Co-expression Network