LOC110489891 (LOC106590187)


Basic Information

Item Value
gene id LOC110489891
gene name LOC106590187
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 26756775 ~ 26759201 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562852.2
CCCTTATCTCAGCAAACATTTGcaacacacgcacagacactcacacaaacaGTCAGGCAGgcaacatagacagacagacactgttgcACAGAAAGAAGGTAAACACTAAAGAGAggtgggttaaaaaaaaaaagaagaagaaagaaaaagaacAACAAGAACAAGAGACGTTGTTTGTTTTGCAGGCCGGAGTAATGGAGATGTGTAGTACAGTGATGTTGGGAGGCCTGGTGTTGGTTCTTCTGTGTTTGTTCATGCTGAGGAGGAAGAGACACGTCCGTCTACCTCCCGGACCACGCGGCCTGCCGCTGATAGGCAACCTGCTTCAGATGGACAAACATGCCCCCTACAAGAGCTTCGTCAAGTGGAGTGGTGTTTATGGGCCAGTGATGACAGTGTATCTGGGGCCCCAGCGGGCCGTGGTGCTGGTGGGGTACGAGGCGGTCAAGGAGGCTCTGGTGGACCAGGCTGATGACTTCACAGGACGAGCTCCCATCCCCTTCCTGGTCCGAGCTACCAAGGGATATGGCCTGGTCATCAGTAATGGGGAGCGTTGGCGCCAGCTGCGTCGTTTCACCCTGACCACGCTAAGAGACTTTGGGATGGGCCGTAAGAGGATGGAGGAGTGGATACAGGAGGAGAGCCAATACCTCATAGACAGTCTGAACGGCACTAAAGCCATGCCCTTTGACCCCCAGCCCTTCCTGAGTCGAACCGTGTCCAACGTCATCTGCTCCCTGGTGTTCGGCCAGCGCTTCGGCTACGAGGACGACAAATTCTTGCGCTTGCTCAACATCCTCACGAACTTACTGCGCTTTGGAAGCACCGCCTGGGGACAGCTCTACAACATCTTCCCCTGGCTGATGGAACGCCTGCCTGGTCGGCAGCATTTCATGTTCAGCCAGGTGGACGAGCTGAGAGGCTTTGTGATGAAGAAGATCCACGAGCACCAGGAGACCATGGACCCAGGCATCCCTAGAGACTTCATAGACTGTTTCCTCACCAGACTCAACCAGGAGAAGGATGTGTCCTCCTCTGAGTTCCATTATGGAAACCTGGTGTCCACAGTGTTAAACCTCTTCCTGGCAGGAACAGAGACCACCAGCACCACTATCATATACGCCCTCGTGCTTCTCATCAAATACCCTGACATACAGGAGCACGTGCAGCAGGAGATCGACACAGTGATTGGTCGACACCGCGTCCCTCGAGTGGAGGACAGGAAGTCTCTCCCCTTCACCGACGCTGTCATCCACGAGGTGCATCGATTCCTGGACCTCGTCCCGCTCAACCTCCCACACTACGCTACCAAGAATATCTCATTCAGAGGGTACACTATCCCTCAGGGCACCGTGATCCTTCCCATGCTGCACTCTGTTCTGCGAGACAAGGACCACTGGGCGACGCCAACAACCTTCAACCCCAATCACTTCCTAGATATGAGCGGAAACTTCCAGAAGAACCCTGCTTTCTTAGCGTTCTCTGCAGGTAAGCGTGCCTGTGTGGGAGAATCTCTGGCTCGTATGGAGATCTTTCTTTTCCTGGTGTCTCTGCTGCAGCGTTTCTCCTTCTCCTGCCCTGGAGGACCTGACAGCATTGACCTCAGCCCAGAGTCTAGCAGCTTCGGTAACATGCCGCGCCGTTACCAGCTCATATCTACCCCCCGCTGACCAAGAGGGGAACTGCAGCTGCACCACCGGAGGAAAActctggaggaggaggtgtagagatGAGGGACCGGTGTTTTGACTAGATAGTAATGCAATGGATGCTGAGGATTCAGGCTAGTGTAATCTGATGAGTTGGAGGCTGGTCCAGGTAGCAGTGTATCTTTCACTTGATCAGTTTCTTTCTGTCTAAGCAATGAAGTCAATTTATATGGGGGTGAGCTAGACAATGACGCTGCATGTTAGTTAGAGGATGCATCACATTGCATAGGAAGGGAAACTATCAGCTTATGCAATGGTGAAGTATTTCTACTCTTTCGCTGGCTTTATTCTTCTTTTTGAATCAGAAATAAATACTATATTACGTATACAGTATACCGTCTTAATAAAACTTTGGAATTTGTGTAATTAATTGTTCCAGGATGACATACCTGACAATGCAATAGGGTACATAAAGAGAGTACACATTAGGCCTATCGCATGACACGTTGACCTCTTGATGTGTGGCCACATATTGTGCCGCCCTATTTTTCTAATTGGCTCAGAGAAGGTGTGTTAACTAGCTAATTATGTGATCTGTGACCTTTTTTACAGGCCCCCGACTCTGTTAACTTGTTGTTGCAGATCGGAAACCCCTTATCTGTTTGTTTGACAATATCTGGTTAAAAGATGAATATGATGTATAAATAGACAACATGTGTGTGGGATTTCATTCCCATTTGTCTCCATGTGAACCAAATAAAAAGTTAGTAAATGTTCA

Function

NR:

description
cytochrome P450 2F3-like

GO: NA

KEGG:

id description
K17685 CYP2A13; cytochrome P450 family 2 subfamily A13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562852.2 True 2427 mRNA 0.50 1 26756775 26759201

Neighbor

gene id symbol gene type direction distance location
LOC110489887 LOC106590191 coding upstream 192119 26544695 ~ 26564656 (+)
LOC110489881 LOC106590196 coding upstream 708131 25935177 ~ 26048644 (+)
LOC118938913 NA coding upstream 903478 25851820 ~ 25853297 (+)
LOC118938912 NA coding upstream 936754 25806674 ~ 25820021 (+)
LOC110489875 LOC106590201 coding upstream 1053384 25665723 ~ 25703391 (+)
LOC110489893 LOC106590186 coding downstream 2739 26761940 ~ 26810579 (+)
topbp1 LOC106590185 coding downstream 51821 26811022 ~ 26849032 (+)
LOC110489896 LOC106590184 coding downstream 100918 26860119 ~ 26918648 (+)
LOC110489897 LOC100380682 coding downstream 164693 26923894 ~ 26928782 (+)
kif9 kif9 coding downstream 201548 26960749 ~ 26974049 (+)
G1275160 NA non-coding upstream 25713 26730598 ~ 26731062 (+)
G1275154 NA non-coding upstream 30623 26725805 ~ 26726152 (+)
G1275147 NA non-coding upstream 40949 26715481 ~ 26715826 (+)
G1274926 gli3 non-coding upstream 130278 26601652 ~ 26626497 (+)
G1274907 gli3 non-coding upstream 188043 26566376 ~ 26568732 (+)
G1275243 NA non-coding downstream 151995 26911196 ~ 26911423 (+)
G1275251 NA non-coding downstream 163951 26923152 ~ 26923447 (+)
G1275257 NA non-coding downstream 175836 26935037 ~ 26935277 (+)
G1275272 NA non-coding downstream 216478 26975679 ~ 26982457 (+)
G1275563 LOC106590178 non-coding downstream 320518 27079719 ~ 27090092 (+)
G1274830 NA other upstream 314388 26440011 ~ 26442387 (+)
G1274765 NA other upstream 391629 26364278 ~ 26365146 (+)
rbis cssa29h8orf59 other upstream 1782062 24968304 ~ 24976522 (+)
G1272672 LOC106590208 other upstream 1793734 24959932 ~ 25027501 (+)
LOC110489866 tmem241 other upstream 1880059 24869606 ~ 24876724 (+)
G1275572 NA other downstream 342108 27101309 ~ 27102027 (+)
G1276288 NA other downstream 1094417 27853618 ~ 27854013 (+)
G1276733 NA other downstream 1430985 28190186 ~ 28256406 (+)
G1277159 NA other downstream 1815115 28574316 ~ 28624218 (+)

Expression


Co-expression Network