Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110489893 |
| gene name | LOC106590186 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048579.1 |
| NCBI id | CM023233.2 |
| chromosome length | 81569517 |
| location | 26761940 ~ 26810579 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| dnaJ homolog subfamily C member 13-like isoform X6 |
| id | description |
|---|---|
| K09533 | DNAJC13; DnaJ homolog subfamily C member 13 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021562859.2 | False | 8181 | mRNA | 0.55 | 55 | 26761940 | 26810579 |
| XR_002468637.2 | False | 7197 | mRNA | 0.57 | 56 | 26765448 | 26809441 |
| XM_021562854.2 | False | 8222 | mRNA | 0.55 | 55 | 26765449 | 26810579 |
| XM_021562853.2 | False | 8224 | mRNA | 0.55 | 55 | 26765450 | 26810579 |
| XM_021562855.2 | False | 8206 | mRNA | 0.55 | 54 | 26765450 | 26810579 |
| XM_021562857.2 | False | 8188 | mRNA | 0.55 | 54 | 26765450 | 26810579 |
| XM_021562856.2 | False | 8190 | mRNA | 0.55 | 54 | 26765451 | 26810579 |
| XM_021562858.2 | True | 8172 | mRNA | 0.55 | 53 | 26765451 | 26810579 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110489891 | LOC106590187 | coding | upstream | 2739 | 26756775 ~ 26759201 (+) |
| LOC110489887 | LOC106590191 | coding | upstream | 197284 | 26544695 ~ 26564656 (+) |
| LOC110489881 | LOC106590196 | coding | upstream | 713296 | 25935177 ~ 26048644 (+) |
| LOC118938913 | NA | coding | upstream | 908643 | 25851820 ~ 25853297 (+) |
| LOC118938912 | NA | coding | upstream | 941919 | 25806674 ~ 25820021 (+) |
| topbp1 | LOC106590185 | coding | downstream | 443 | 26811022 ~ 26849032 (+) |
| LOC110489896 | LOC106590184 | coding | downstream | 49540 | 26860119 ~ 26918648 (+) |
| LOC110489897 | LOC100380682 | coding | downstream | 113315 | 26923894 ~ 26928782 (+) |
| kif9 | kif9 | coding | downstream | 150170 | 26960749 ~ 26974049 (+) |
| trnaa-ugc-66 | NA | coding | downstream | 282910 | 27093489 ~ 27093563 (+) |
| G1275160 | NA | non-coding | upstream | 30878 | 26730598 ~ 26731062 (+) |
| G1275154 | NA | non-coding | upstream | 35788 | 26725805 ~ 26726152 (+) |
| G1275147 | NA | non-coding | upstream | 46114 | 26715481 ~ 26715826 (+) |
| G1274926 | gli3 | non-coding | upstream | 135443 | 26601652 ~ 26626497 (+) |
| G1274907 | gli3 | non-coding | upstream | 193208 | 26566376 ~ 26568732 (+) |
| G1275243 | NA | non-coding | downstream | 100617 | 26911196 ~ 26911423 (+) |
| G1275251 | NA | non-coding | downstream | 112573 | 26923152 ~ 26923447 (+) |
| G1275257 | NA | non-coding | downstream | 124458 | 26935037 ~ 26935277 (+) |
| G1275272 | NA | non-coding | downstream | 165100 | 26975679 ~ 26982457 (+) |
| G1275563 | LOC106590178 | non-coding | downstream | 269140 | 27079719 ~ 27090092 (+) |
| G1274830 | NA | other | upstream | 319553 | 26440011 ~ 26442387 (+) |
| G1274765 | NA | other | upstream | 396794 | 26364278 ~ 26365146 (+) |
| rbis | cssa29h8orf59 | other | upstream | 1787227 | 24968304 ~ 24976522 (+) |
| G1272672 | LOC106590208 | other | upstream | 1798899 | 24959932 ~ 25027501 (+) |
| LOC110489866 | tmem241 | other | upstream | 1885224 | 24869606 ~ 24876724 (+) |
| G1275572 | NA | other | downstream | 290730 | 27101309 ~ 27102027 (+) |
| G1276288 | NA | other | downstream | 1043039 | 27853618 ~ 27854013 (+) |
| G1276733 | NA | other | downstream | 1379607 | 28190186 ~ 28256406 (+) |
| G1277159 | NA | other | downstream | 1763737 | 28574316 ~ 28624218 (+) |
