topbp1 (LOC106590185)


Basic Information

Item Value
gene id topbp1
gene name LOC106590185
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 26811022 ~ 26849032 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562861.2
TCCGTCTGCAGCTGATTACGATTTCCGCGCGCGAATAGCAACGCCTACAAGATGTTTgaactatttttttatttatttgttgtacACAAGTGATCGAGACAATTGGCGATTGTTTGTTCAGATTTAAACATCTTATTTTGATGGTCTTCAAGCTCTGTGAATGACGTTCCAATTCGAGCAGGCATCCAGTCGTCTTCATTTGGGGCTCGTGCACCAGTGATTTTGGCCCCTTGCGAGCTCGACTTTTAAACCTGTTAATGTTGCTTGCTAGTTCTAGATAATTTAACAAACCTAGTTATATCCTACAGTAAAAAATATTATATTGGCGGTCCAATAAGGTTGACCATGTCGAAAGGAGATCGAGATGGCTTCGTTGTGAAGTTTGTAGAAGTCAATGGACGAAAGACAGACCTTGCTGTCAAGGCCTATGAGGCCATAATGGCGCTCCAGTCAGAGAGTTATTTGAAGAACATTGATGAGGAGACTGCATTACAGATGGACCGTAATGACAAGTCTCTATTTGTCTTCAGTACCTTTTCCACTCCAGCCTTCCACCACTGCACAAAGCTGGGCTGTCGAGTGGTGAGTCCACTAGTGGTGCTCTTCTGCCTGCAGCAGCAGCGCTGTGTTCCCAAAGCAGAGCAGCCTGTCTACAACATGGCCATGGCTGATGTTACCATCTCCTGCACCAGTCTGGACAAGGAGGCTAGGGCTGACGTGATGGATCTGGTACAGCTGATGGGAGGGCGGGTCTATCGGGACCTTAACGTGTCTGTCACTCACCTAGTTGCCGGGGAGGTGGGCAGCAAGAAGTACCTGGTGGCCGCCAGCATGGGGAAGCCCATCTTGCTTCCCGCCTGGGTCAAAACCTGCTGGGAGAAATCACAGGACAGcCTGTTCAGATACACTGACCTGCCCATAGAGGACTACTTGTGCCCTGTGCTCTGTGGCTGCACCGTCTGTGTCACAGGCCTCTCCACGGTGGAGCGTAAGAAGGTGCAGAGGCTCTGCCAGCTGCACGGGGCCAGCTACACTGGACAGCTCAAGATGAACGAGTGCACCCACCTCATCGTCAGCGAGCCCTCAGGTCAGAAGTATGAGTGTGCACAGAAGTGGAATGTCTTCTGTGTGTCTCTGCACTGGCTGTTTGACAGCATCGAGAAGGGCTTCTGCCAGGACGAGAGTCGCTACACAGTGGAGCGAGGGGATCAGAAAGACGGCAAACCCCACACCTCCACCCCGACCGGGACCAGCAAGAAGAAAGAGGACAGTGCGTCTCTACTGGGCTTGAGCCACATTTCTGTGAACAGCAGCATGACGGTGAATGACACGGCCTTGACCAATGCCACGCTCAGCCGGCTGGACACACCAGACCCTATCGACGCTCTGGACATCACAGTCGGCCCCGCAGAAGACTTGCTGGACGGCTGCAAGCTGTACCTGTGTGGGCTGCCAGGGATGAGGCTGGAGAAGCTGCGTCGCCTGGTCAACATGGCCGGGGGCCTGCACTTCAACCAGCCCAGCGAGGAGCTCACCCACGTGGTCATGGGAGATACTGACCAGGAAACCAAGACCTTCCTGGCCAAAGCCACACACAGGCCCCATGTCGTGACGGTGCAGTGGCTGTTGGACAGCTTCTCCAGAGGCAGCCTGCTCTCTGAGGGGGACTACCACCACCCGGCTTGTCTGCCCCCCGCCCCTTCAACCGTGGCCATGCCTGCCCCCCGCACCTCCGCTTCTCGTCCATCCTCCACCATCTCGGCTGCACCCCTTGCCCATGAACCAGCTACCCCTCGACACAGGAAGGCCGAGGAGGACATGCTCTCTCAGTACATGGATGACGACCAGACAGTGGTGGAGATGCCTCTACCAGCTGACAGCAGCATCCACAGGAGGCAGAGCTCTATAGCACCAGAGCCCTGGGTCTCAGCCCCAGGCCAGGCTTCTACTATAGCCGAAGTTGGGGCCGGAGCTGACACCACCCTGCAGGAGGCCAGTGAGGCGGGCCTATTTGCGGGGAAACGCTTCCTCCTGGTGGGCTTTGGGGCAGAGGCGGAGGCCCAGCTCTCCATGCTGGTGACGGAGAACTGTGGGAAGGTCCTGGTGGGGCGCACCCGCGCCGTGGCTGACTACGCTGTGGTACCCCTGCTGGGCTGCGAGGTGGAGGCCACTGTGGACGAGGTGGCCACTGATACCTGGCTGGCCATGTGTGTGGAGCAGCAgtgtgtgttagagctgggctCCCACCCCTTGTTCAGCCCTGTGTCAGTGATGGAGGGCCGCTCCCCTCTCAGAGACTGTGTCCTCTCAGTCAGCCAGTTCACCGGGGCAGAGAGGGAGTCCCTGGTAGAGCTAGCCAAACACCTGGGAGCCAGTGTCCAGGACTACTTTGTGCGCATGGCCAATCAGAGGAGGGGCATGCTGGCTAGTACCCACCTGGTTCTGCAGAGCCCAGAGGGCACCAAGTACCAGGCGGCCGAAAAGTGGGGGCTACCGGCCGTCACCCTGCGCTGGGTGCTGGAGTCTGCCAGGACGGGCCGGAAGGCAGAAGAGGGGCGATACCTGGTGGATTTGCCCCGTTCTCCAGagagagaagaggagagttttGTGGGGGGTTCGCAGAAGCAATCCATGCCCCCTCCCCCAGCCCGTAACAAGTCCCCAGAGATTCCCCTGCTGGGCCCCCAGAGCGGGGCGGCCGTCACCCCCCTGGACACGCGCCGTTTCCAGAGTAAGGTGTTCCGCTCCGTGCTGGACCAGGGCCAGCAAGACAAGGACTGTACCACACCGGGAGGTCAAGAGGGGGACAGGAAAGCAGGGGGGCAGAAAGAATCCCCAGCGCTGCCGTTGGACACCCCCTCCCGTTTCCTCTGCCGAGACCAGCTCTTCAGACCCACCTTCAATGTCAAGGCTGCGTTAGCAGCGTTGGACACACCAGGGGGCAGGTCACAGCAGAGTCAGAAGGTCGTGACCCCGCTGTCCGAGGTCATCGGGAGGAACCTGAAGGTGGCCCTGGCCAACAGCACCCGCAGCAACGACCCTGACCTCcaggccctctcagccagcccccAGCTCAGCAAGGAGACACACAGAGTGgtggaggaggaggctgcTGCCCTGACTGGTGTGGTGATCTGTGTGAGTAAGAAACTGAGCAAGAAGCAGCGGGAGCTCAACGGCATCGCTGCCTCATTGGGAGCTGACTTCAGGTGGTCGTGTGACGACACCGTGACGCACTACATCTACCAGGGTCGTGTGGGGGACAACACGCGGGAGTACAGGGCtttgaaggagagaggggtgcaTGTTGTGTCCCAGCACTGGCTTCAGGCGTGTGCTGAGGATCAGAGGCACGTGTCGGAGTCTCTCTACCCGTTCACCTACAACCCCAAGATGAGCCTGAACCTCAGCCAGGTGCCTCCTGACAGTAGCCAGAGGTCACCCCCTGCCACCCGCACCACAAAACTCAGAGACCTCACTGAGGCCCAAGAGAACAGGCCTGAAGATAATGCCGTAGAAGACGCCACAACCTCCCATCACGTCAGTGGAGAGACTGATCAAGAGCAGGGCCGGGACAATGCAGAGAAGGAAGACCTGTCAGAGACCCTGGAGATGAGGGAGAAGCTCCAGAGGCAGCTGCAGGAGATCATGTCAGCCACCAAGAAGACCACCAGCAGGCGCTCTTCAGCCCGCCTGGGCTCCGGGGGGACTGACtctcatccccatacccctggCCGCAACGCAAACGCCCGACGCACTCTGGAAGCACTGCGGATGTCTCGTCAGGCAGCAATGGACCTGAACACAGAGCCGTCTCAGAGTGAGCAGATCGTGTGGGATGACCCAACGGCCCGGGAGGAGAGGGCCAAGCTGGCTGACAACCTGCAATGGCCTGGCAGCCCCTCCCAGCACTCTGAGTCCCTGGCTGTACCTCTAGCAGCACCCCTATCCCACTCTGACAATGCCGGAAACACACTCCGGGACTCCATGACCGACTCTGAAATGGTGGAaatggTGGTGTGTGACGTGATTGACCAGCAGATGGGTGAGAGAGTGATGACTGTGCCAGGGGAGGAGCCTGACCACCTCACCCCTAAAGCCCCCAGCATCGCCTTCCCCCTCGCCAACCCCCCCGTTCCCCCAGAGCCACAGATGGATGAGGAGAGTGAGGCGGAGAAGGAGCCTCCTCGGTTCCAGCTCTCCTCCCTCAACCCCCAGGAGAGGATAGACTACAGCGCCCTCATAGAGGAGCTGGGGGGCGTGGTGCTGGACAAACAGTGCTTTGACCCCAGCTGTTCCCACATCATCGTGGGGAGCCCCCTGAGGAATGAGAAGTACCTGGCAGCCATGGCCTCTGGGAAGTGGATCCTGCACCGTTCCTACCTGGAGGCCTGTCGCTCCGTGGGACACTTTATCCAGGAGGATGCGTACGAGTGGGGCAGTAGCTCCATCCTGGATGCCCTACCCTCCATCAGCTCCCATCAGAAGAGGCTGGCATTGGCTGCCATGCGCTGGAGGAGGAACCTGCAGGACCAAAACAACCTGGAGGGAGCGTTCAGCGGTTGGACCGTCATGCTAAACATCGACCAGACCAGAGAGTCAGGGTTCAGACGACTACTGCAGTCTGGTGGAGCAAAGgttctccccagtccctctccatctctgtacaAGGGAACCACGCACCTGTTTGCAGAATTCAGCCGGTTGAAGCCAGGAGACTTCCGGGTGGATGTGCCAGAAGCCATGTCCCAGGGAGTCAAATGTCTGAAGCCAGAGTTCATCGCAGATTACCTCATTCAGGAGCCGTCTGCACCAATAGAGATGTACTATCTTCCTCAAGCGGCCCAGTGTCTGCCAGTGGGCGCAGACGTCAGCCGCACCACCCCGTCCTACAAGCGCAAAGTATCAGGAGATTCCTCCAAGCTCAAGAAGACCCGCCTCAAGTGAGAACATCGGCATTTAGAGCTGTGGTGTCAAAAGTAAATTCCATCATTTTAGAAACACCCTTGCAAGCCTTAATGATAGTATGTCtgtaaataatatgttttttcattATTAGTTGTATGAAAATAAAATTAATTTGACAAAT

Function

NR:

description
DNA topoisomerase 2-binding protein 1

GO: NA

KEGG:

id description
K10728 TOPBP1; topoisomerase (DNA) II binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562861.2 True 5089 mRNA 0.58 27 26811022 26849032
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110489893 LOC106590186 coding upstream 443 26761940 ~ 26810579 (+)
LOC110489891 LOC106590187 coding upstream 51821 26756775 ~ 26759201 (+)
LOC110489887 LOC106590191 coding upstream 246366 26544695 ~ 26564656 (+)
LOC110489881 LOC106590196 coding upstream 762378 25935177 ~ 26048644 (+)
LOC118938913 NA coding upstream 957725 25851820 ~ 25853297 (+)
LOC110489896 LOC106590184 coding downstream 11087 26860119 ~ 26918648 (+)
LOC110489897 LOC100380682 coding downstream 74862 26923894 ~ 26928782 (+)
kif9 kif9 coding downstream 111717 26960749 ~ 26974049 (+)
trnaa-ugc-66 NA coding downstream 244457 27093489 ~ 27093563 (+)
LOC110489907 LOC106590173 coding downstream 483454 27332486 ~ 27350841 (+)
G1275160 NA non-coding upstream 79960 26730598 ~ 26731062 (+)
G1275154 NA non-coding upstream 84870 26725805 ~ 26726152 (+)
G1275147 NA non-coding upstream 95196 26715481 ~ 26715826 (+)
G1274926 gli3 non-coding upstream 184525 26601652 ~ 26626497 (+)
G1274907 gli3 non-coding upstream 242290 26566376 ~ 26568732 (+)
G1275243 NA non-coding downstream 62164 26911196 ~ 26911423 (+)
G1275251 NA non-coding downstream 74120 26923152 ~ 26923447 (+)
G1275257 NA non-coding downstream 86005 26935037 ~ 26935277 (+)
G1275272 NA non-coding downstream 126647 26975679 ~ 26982457 (+)
G1275563 LOC106590178 non-coding downstream 230687 27079719 ~ 27090092 (+)
G1274830 NA other upstream 368635 26440011 ~ 26442387 (+)
G1274765 NA other upstream 445876 26364278 ~ 26365146 (+)
rbis cssa29h8orf59 other upstream 1836309 24968304 ~ 24976522 (+)
G1272672 LOC106590208 other upstream 1847981 24959932 ~ 25027501 (+)
LOC110489866 tmem241 other upstream 1934306 24869606 ~ 24876724 (+)
G1275572 NA other downstream 252277 27101309 ~ 27102027 (+)
G1276288 NA other downstream 1004586 27853618 ~ 27854013 (+)
G1276733 NA other downstream 1341154 28190186 ~ 28256406 (+)
G1277159 NA other downstream 1725284 28574316 ~ 28624218 (+)

Expression

topbp1(LOC106590185) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 30.
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topbp1(LOC106590185) Expression in each Bioproject

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topbp1(LOC106590185) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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Co-expression Network