LOC110489897 (LOC100380682)


Basic Information

Item Value
gene id LOC110489897
gene name LOC100380682
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 26923894 ~ 26928782 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562865.2
GCATCCTGGAAAGTATGTATTGGCTGTACATCCGGTTTGCCTGTCAAATAGCAGTGAGCGAGCGCAGCCCCCAAAGATTGGTAATGTGGCACATTGAAAGACAGGCGGTCAGACAGTAGCTACATTTTCTTTTTTACGCTAGAAGGGAAATTGTTTGATTGCTCTGGTCGAATAACAATTTAATCCCTCCCCTTCAACTGAATTATAGAGACGTTGTGAAATTTACGATTGTCCTTGCATAGCGTTTGTTTCTGAAAGAAGATGGCGGATGTAGAGACTTGTGGTGCTGCTCCGGAGAAGAGCCTGGATGATTTCTTTGCCAAGAGggataaaaagaagaagaaagaaaaggGAGGTAAGGGAAAAGAAGCGCCAGTTGGGCCCACACCAATTGTCTTGAAAAAGAACAAGAAGGAAAAGGAGAAGTCGGGCACGAAAAACGAAAATCAAGATGCGCAGCCGGAgaagGAGGATGAGGAGTGGAAGGAGTTTGAGGCGAAGGAGGTGGACTACAGCGGACTCAGGCTGCAGGCTCTCCAGATAAGTgatgagaaggaggaagaggagtatgAGGAGGAGGTCGGTGAAGATGGCGAGATCATCCTGGTCAGTGGAGACAAAATGTCTGGGCCTTGGAACAAGTCCGGTGCCCCGCCACCTGCCGCTGCCTCTGTTGAGGTGGAAGAGGTGCCTGAGTCAAAGCCTTCTGGGGTGTACCGCCCCCCAGGGGCCCGACTGACCACCACCAAGCGTGGCCCCAACCAGGGGCCCCCTGAGATCTTCAGCGACACACAGTTCCCCTCACTCGGGGCCGGCTCCAAGCATGTTGAGACACGCAGagacagggagatggagaagacCTTTGAGGTGGTGAAGCACAAGAACCGTGGCCGAGAGGAAGGCGGCAGTGGGGCTTCCCTGCAGCAGTTGGAGCTCGGTAACCAGTACGCCATCTTGGGGGACAAGTAGCACAccccaaccccccccctcccctcccccgccCATCCAGCGTGGTCTTGCCCAGCCGCCAGAGGGAGCTGAACTACAGCTGTGTGTACCTAACTACAGCGCAGTCCTGACAACGAATGCTGgcgctgctgccaccaccacactGGACCTTCTCTCCCTCACACCACCGTACAATACATACAttatacatacaaacacactctCATACACCTCACACAGTGAACCATATAAACTGACACACTTTACATCTACAtgcattatatacagtacattcacaaAGCACCTGGTTGGCAAAACTGAAGGACTACATCCAAAAGTGCTGTGGCAAGTGATTAactgaaacaaaaaaatataaaatctatATGATACACCCATATGAATGACACTGCAGCATCAACAACAGCAAACGACAACGTACGGTTGTCTTTTGTGGATTGTTTTCAGAGCAGCAGTTGTGTGGTACAACTTCTCTCTGGACTTCAACTTGCTTTGATTATAAAGCCACAGAGGATCGAAGAAAACGAAAAAAATTGTGCGAGATGAATTTACGAACTGTTGCGAATAGATCTATTTTTTTGCGAGATCGTTATAACCCAAACTGCACATGGTTGGTTGGTGTGTTTGAGTTATGGTTTGGGCACGTGAGGGGAGACTACCTCAGTCACAGCTGTGGTGACCATGTTGAGCGGGCTTTGGCTCTTGGTGGTGAGTGGGGCAAACACCAGGCCTGCAGACGAGAAGACCACCAGGCTCTTTCACTTAGAAACTTGAAGATTTTGTTTTCCTCAAGAATGGGACTCCTGCAAAGATCTGTGGACACAGGAGAGAAGTTATGGTCCTCATTTAGAATGACTATTTAAAAGTGGCCTTACtgtaaagagcgagagagggaaactgCTTCGTTCTCTAGAGAGAAACTTGCTCGTTGTCTCATGGTATGTTGCCAGCCTCCTGGATCTCGCAACTTAAAGATAAACCAACCTCCTTTCCTCTTCAAGAATGTAGTGCTGAGTTGTAGTTTGTCAGAATATTATACTGACTAAATGTCCTTCATATCCACTGTTTGACTTGCGCGCCCCATCTCTTTTAAAATTTGATTGTTAACATTGGCAAACCGTTATTAAAGCTCCTCCTTTCTAATCTGAAGTCATTCCTTTGGTAGATGTTTGGACTTTTTACAGGATTCTGAGGATTCGGccctttttatttttacttttgagGGTTTTGTTTCCACCAGTGTTCGTGAACTTACGTCATTGTGTAGAGGTGGGATATGAAAAATAGACTGACATATTGTTAAGGTGCAAAGAGATACTAGCTACAGCGTCCCAAAAATGACCCTTCTGTACCCAATGCCTGTAATTGACCACAGTAAGTATGGCCTGTCATACTGCTGTCCATTTTTGAGTACATATGTTTGCTTTCGCCTATATTCATTGAATTGCTTCAGTGCAAGACATTCAAGTTTACCCTATTCTGCAGAATGGAACTCAACCCCCTTTCTCCATCCTCCCCATAGTTAGTTGCCCTCAAAGCTCCTTCTCCAAATATGAGGTGTATTGTTTCTGTACTTATTGAACTCTTTAGAGCAGATCGATGACATGTatccctggtcctggagagcttCAGTCAGTGCCTGCTATCTTTCCGCTTGGGCTCCAAACCACCTGACCACTGTCTCCTCTCATGAACCGATGCGGTAAAATAGAAAGGTCAGGTGGTTTAGATTTAGAATGACCATGTTTGCATTTCCTTAGGTTGAACAGAGGGTTAGAACGAAGAATTGCTGGAGTTGTGTTCAGATATTTCTGTTGAAGTCATTTGAAATGTAATGGAACTTAAAATTTGCAAATGGATGGCCAGAGTTGTGGAGGGCACTGTAGCACACAAAGCATCCTGTGGACCCCTGCCTAAACGTTGTGGGTGGAAGTAGCGAACATTTCTACTGAGAACTGTTTTCAAAGACTAGTTTAACACAAAATAAACAGTGATCTTTGTGA

Function

NR:

description
protein CDV3 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562865.2 True 2969 mRNA 0.46 5 26923894 26928782

Neighbor

gene id symbol gene type direction distance location
LOC110489896 LOC106590184 coding upstream 5246 26860119 ~ 26918648 (+)
topbp1 LOC106590185 coding upstream 74862 26811022 ~ 26849032 (+)
LOC110489893 LOC106590186 coding upstream 113315 26761940 ~ 26810579 (+)
LOC110489891 LOC106590187 coding upstream 164693 26756775 ~ 26759201 (+)
LOC110489887 LOC106590191 coding upstream 359238 26544695 ~ 26564656 (+)
kif9 kif9 coding downstream 31967 26960749 ~ 26974049 (+)
trnaa-ugc-66 NA coding downstream 164707 27093489 ~ 27093563 (+)
LOC110489907 LOC106590173 coding downstream 403704 27332486 ~ 27350841 (+)
chpf2 LOC106590171 coding downstream 433021 27361803 ~ 27369326 (+)
asap1b LOC106590164 coding downstream 523498 27452280 ~ 27519315 (+)
G1275251 NA non-coding upstream 447 26923152 ~ 26923447 (+)
G1275243 NA non-coding upstream 12471 26911196 ~ 26911423 (+)
G1275160 NA non-coding upstream 192832 26730598 ~ 26731062 (+)
G1275154 NA non-coding upstream 197742 26725805 ~ 26726152 (+)
G1275147 NA non-coding upstream 208068 26715481 ~ 26715826 (+)
G1275257 NA non-coding downstream 6255 26935037 ~ 26935277 (+)
G1275272 NA non-coding downstream 46897 26975679 ~ 26982457 (+)
G1275563 LOC106590178 non-coding downstream 150937 27079719 ~ 27090092 (+)
G1275573 NA non-coding downstream 174055 27102837 ~ 27103117 (+)
G1275576 NA non-coding downstream 176501 27105283 ~ 27105492 (+)
G1274830 NA other upstream 481507 26440011 ~ 26442387 (+)
G1274765 NA other upstream 558748 26364278 ~ 26365146 (+)
rbis cssa29h8orf59 other upstream 1949181 24968304 ~ 24976522 (+)
G1272672 LOC106590208 other upstream 1960853 24959932 ~ 25027501 (+)
LOC110489866 tmem241 other upstream 2047178 24869606 ~ 24876724 (+)
G1275572 NA other downstream 172527 27101309 ~ 27102027 (+)
G1276288 NA other downstream 924836 27853618 ~ 27854013 (+)
G1276733 NA other downstream 1261404 28190186 ~ 28256406 (+)
G1277159 NA other downstream 1645534 28574316 ~ 28624218 (+)

Expression


Co-expression Network