LOC110489907 (LOC106590173)


Basic Information

Item Value
gene id LOC110489907
gene name LOC106590173
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 27332486 ~ 27350841 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562891.2
TTAAAGAAAGCGGTACCACGAGCTGCTGGTTATATGGTGTGGATTATCATTTGCTGACTGTCTTGTCTGAGTACACATTGCTACAGACAGTTATATTGATATTGAAACGAAGCGACGAAGTGTTCAAACGTGTGTGTAGTCTGTATAAACATTTTCTTATTTTGGAATAACTGTGGTTTTCGGGGCGtttcccactgtctgtcagcagTTTTGATAGGTTCAAATCGCGTTCTGTAATTTGGCCATTGGCTCTGGCTACTAATCTTTCCTTGACATGCAAGCCAACAACAGGGCACATAGCTAGCTAGTGCAAAGAACCACTGAAACGGAAAGTATGGATTCCACTCCGACTATCGGAGAGTTGTTCCATACCCTGTGTGAGATGGGCTTCAGTGAGGAGCAGATCCAGTCTGCCGTGCAGGCAGGACACTTCTCAGTGTCTGATGCAGCTGAGTGGCTTTTacaaggtgaaaatctgaggCACAAGCTGGTCAAAAATCCACCCCAGCCAGTTTCAACGGCATTTGCTGCATTCAACCCTCCCAAAGATGCAGGGAGCTCTTGCCCCCCAAGCACATCACACTCACAGACATCGCCCAATGACAGTAGAGGCCCCTCTTTAGTCCTGGGATCCCCGCAACCCACCAGCCCATCCATAGACACCCCACCGTTGGAGTCCCGTATCAGGCAGGACAAGAGTGACTTTCAGGAGCAGCAGAGGATGCGTGTGGCCAACGAGGCCAGGAACGAGAGGAGGCAGAAGAAACAGGAGCGTGAGCTGGTGCTGAAGCGTATTGCTGAGGACCGGAGGAGCTTACAGGAGAAGAAGACCCAGCCGAGCGCCCCCACTGAGACCACGCCCCCCCCTGGCAGCAGCCAAGGCCAGAGGCTGGGGGGTACGGTCCAGACTAGTGTAGACAACAACTGCATCCTCATGATCCGGCTACCCTCTGGGGAGTCCATGCGGGAGCGCTTCCCCGCCGACGCCCCTCTGCGCAGCGTGATGGAGCACATCTCCGGGCGCTACCCCTCCCTGGCCTCCTTTTCGCTCCTCCAGGGGTTCCCACGGAAACGCTTTGGGGATGCGGAGCTGGCTTGCTCCCTGCGCTCCCTGGGCCTCACGCCCAACGCCGCCCTCTGTATCCAGACCACGCCCCCAGAGACACCCCAGGATCCGGCCAGCCCAGCTGATCGCCTCTTATTGGGTCAGGAGGAGGTGGTAGTTGCACCCCCTGCGCTTCCCCAGCCACAGCAGCCCCAGATACCAGAgctggaggaggaagggatggaggatccTGCTCGGCCCCCACCTCTGCCTCACCAGCTGTGGGAAGAAGCAGTGGGCTACGCAGGCATCCCTGGTGTTGGCCCCCCAATGACTGGACCTTCTCACTCCTGGGGACGGGGCCAGAAGCTGAATCCTGGTGATGCAGAGGAGGCTGCCAGCTCAGACGATGAAGAGATGCCAGAGGGGGGTAGAGAGCCGTACTTCCTCCTCAATGCAGGTATGCCCCGATTACCCTTCTTCCCAGAGAACCGGCTGCGTGGAGGGCTGGAGCCCAGACACCACTGGCCAGACCAGGGCAACAGACTTAGGGAGGGGGTGGCAGAGGACCCAGCAGTGGAGCCAGAAGAGGCTGCAGGTTGTGTGGTGCCGGGGGCAGCGGGCCAGGCTGCAGTAGAGCGCCTCCAGAGAGCTGCCCAGGATGACCCCCAGGCCACTCAGGGTCACCCATCCCCCCCCAAGAAACCCTTCAGGACGCCCAGCGTCCCCTCTCTCTGTGCAATGGCCACCCGGGCCACAGTCAACCTCATGACAGCTCCCAGCATGCAGTACAGCAGCAGTCTGTCGTGTCTGACCCCTGAACTGGCCGAGCTCCTGCTCAGTCACATGTCCCGCGAGAGGCTCCTTCGCCCGCGCACCCTGGAACTCTTTTTCGGCTGCCCGATGCAGAAGTTTGTCCTCAACTGCTACCCGTACTCCACCAACGAGCTGCTCCGGCAGCTACGGGCCTTCACTGCACTGAAGCACCTGAGCCTGGTCAACTCTCCTCTCATCACAGACGCAGGCCTCTCTGTGCTGTGCAGCCTACTGAAACTGCAGCACCTGAACCTGGCCTCATGTAGCAAGCTAACAGACTCCTGTCTGCAACACATCACAGGCTTGAAGAGCCTGTCTTTCCTGTCGCTAGACCAGACCAAAGTAAGCGATGTAGGGATGGTGCTGTACCTGCAGTCTGCTCCTTCGACACTCACCCAGCTTAGTCTGAACCAGACCTCTATCACGGAGGCCACCCTGGCAGCGCTGCCCGCCTGTGTGCCCCAGCTACGACTGCTCAGCATCAAACACACTAAGGTGAGTGACGTGTCGGCCCTGGCTGAGCTTCCCAGCCTGCAGACCCTCTACCTGGACGGCACGGCGGTGAGGGAGGGCTCTCTGGAGCACCTGGCCACCCACTCCGCCCTCTCTGCCCTCAGCGTGGCTGGCATCTCCGTCGCTGATGGCAACAACATTCTCCAGATCATCTCAGGTCTCCGGCTGACCCAGCTGACCCTGCCTGGACGCCACTCGGTGACGGACGCCGGCCTGGCCTTCCTCTCCAGACTGTCCCTACTGTCCGAGCTGGACCTAACTGACTACACATACGTCACCGACCAGGGGGTCACCCAGCTGGCTACCATGACCAGgcTGAAGAGGCTGTCACTCAGCAACACGCAGGTGACGGACGCCGGGCTGCCCTCCCTGCACTGTCTGCAGGAGCTGCTGGAGCTGTGTCTGGACCGCACGGCCGTCACCAGCCGAGGAGTGGCCGCCCTCGTCACCGGTCTGCCACACCTGCAGGTATTAAGCTTGGCCAGTACTCAGGTGGGTGACACGGTCGTGAGGAGAGGTCTGGTCCACTGTGTTCAGCTCTTCAAGCTCAACCTGAGCCGGACACGCATCACTGACCACGGACTGAAGTTCCTGAAGTGCATGTGTCTGACCCAGGTGAACCTGGACGGCTCGGGCGTGACCCTATCGGGCATCGCCAACCTGATTGCCTCCTGTCCCCACATCACCAGCATCAGGGCCAGCAACCCGCGAGCCATCCCCCCTGACCAGGTCTCCGACGACAACGACGGTGACAATCAGTAGGGGGATGAGTAGTGACCCCGCCCAGCCCTTTCTGATGAGGCTTGGGTCAGCTAGCTAGTAGCTTCCGCTGTGCTCAACGGTATCAGCCCCATGTTTCTGCATCCAGCTGACAGGCTCAGCGTAGTCTGGGTGAAGAGAAACCCAGCTCTAACTGCACTGCTTCAACAACGGCTAGTGACACTACTCGCTCAATCACAAGTCCACCATACTAGCTGTCGAAACCTTAGAAGGGTGCCTTCTTGTGCTTCTAAAGGTCTAGATGGGAGCCCTGCTCCCTGTAGTTAATCACAACCACCATTAAAGTTATTACAATGAAGTCTCACATAAGTGTGCTATGTTGATCCCGGTGTAGGGTTCAGTTTTCCCTAAACGCAGAttttgggtcagttttgcatttctccCGCTAATGGTTCAGTGTAGGATTGGGGAGGGATAGCTGATCCTTGATCTGTACCTAAGGGAAACTTCACTCCAGAACGTAGATCCCCCTGGGCCTGGCAGAGGTATAGTATGCATGATGTCCAATCTACATAAAGCAAAGGAACTATGATTAGGAATTGATCAGGGATATAACCTTCATATATCACAGCATGTTTTCACCCAGATTTTTCCGCCTGAATTCTCTAATGAATCAGTTAACACTACTGAGGTCCAACATTTACTTACTTCCTGTATTGTCAAAAAAACAAATGTTGGGGGTGGTTCAAGCTTAGGCAGGTTCTATctgcagttgaagtaggaagcttacatacgccttagccaaatacatttaaactcagtttttcacaattcctgacatttaatcctagtagaaattccctgttttaggtcagttaggatcaccactttattttaagaatgtgaaatatcagaataatagtgtagagagggatttatttcagcttttatttatttcatcacattcccagtgggtcagaagtttacatacactcaattagtatttggtagcattgccttaaacaatttaaacttaGGTCAAACGTCGTTTCGGGTAAGCTTCacacaaaaagttgggtgaattttggcccattcctcctgacagagctggggtaactgagtcaggtttgtaggcctccttgctcgcccacagattttctataggattgaggtcagggttttgtgatggccactccaataggcTGGAgacgactttgttgtccttaagtaattttgccacagctttggaagtatgcttggggtcattgtccatttggaagacccatttgcgaccaagctttaacttcctgactcaaaattgtcaattagcctatcagacgcttctaaaggcatgacataattttctgaatttttccaagctgtttaaaggcacagtcaacttctgacccgctggcaTTGTGatacaatctgtctgtaaacattacttctcatgcacaaagtagatgtcctaaatgacttgccaaaactatagtttgttaacaagacatttgtggagtggttggaaaacaagttttaatgactacaactgTACTAACACTTGATTAGCCAGCAACTGGAAAGCTAAGCATTGTTGGTGGTTGTGGAGAGGTTGACTTCTCAAAGCAAATAGTGGGCCATGATATGGGTTGCATAATGAGGGGTTGGGCTCAGCAGGAATCCAAAGTATCTCCGTTCATAATTTTGCTTCATGTTATGTTTACACAGATGTAAAATACAGTTTATTTTCTCAATGTTTTAGATAAGTGCACCGTATTCCCTACATTGTCAAAGGAAAATGCAGAATTAAAAGCTGCATTTTGGAAGATGTTGTATTTGTTCAAAGACCCCAAAATATAAGACCGTAAATATTCAAATGGTCAATTCAGTAATTTATTCAGACAAATTGTTATTGCAATacgttaaataaaaataaaggcATAATTAATGCTCTTCTGCACAAA
>XM_021562892.2
TTAAAGAAAGCGGTACCACGAGCTGCTGGTTATATGGTGTGGATTATCATTTGCTGACTGTCTTGTCTGAGTACACATTGCTACAGACAGTTATATTGATATTGAAACGAAGCGACGAAGTGTTCAAACGTGTGTGTAGTCTGTATAAACATTTTCTTATTTTGGAATAACTGTGGTTTTCGGGGCGtttcccactgtctgtcagcagTTTTGATAGGTTCAAATCGCGTTCTGTAATTTGGCCATTGGCTCTGGCTACTAATCTTTCCTTGACATGCAAGCCAACAACAGGGCACATAGCTAGCTAGTGCAAAGAACCACTGAAACGGAAAGTATGGATTCCACTCCGACTATCGGAGAGTTGTTCCATACCCTGTGTGAGATGGGCTTCAGTGAGGAGCAGATCCAGTCTGCCGTGCAGGCAGGACACTTCTCAGTGTCTGATGCAGCTGAGTGGCTTTTacaaggtgaaaatctgaggCACAAGCTGGTCAAAAATCCACCCCAGCCAGTTTCAACGGCATTTGCTGCATTCAACCCTCCCAAAGATGCAGGGAGCTCTTGCCCCCCAAGCACATCACACTCACAGACATCGCCCAATGACAGTAGAGGCCCCTCTTTAGTCCTGGGATCCCCGCAACCCACCAGCCCATCCATAGACACCCCACCGTTGGAGTCCCGTATCAGGCAGGACAAGAGTGACTTTCAGGAGCAGCAGAGGATGCGTGTGGCCAACGAGGCCAGGAACGAGAGGAGGCAGAAGAAACAGGAGCGTGAGCTGGTGCTGAAGCGTATTGCTGAGGACCGGAGGAGCTTACAGGAGAAGAAGACCCAGCCGAGCGCCCCCACTGAGACCACGCCCCCCCCTGGCAGCAGCCAAGGCCAGAGGCTGGGGGGTACGGTCCAGACTAGTGTAGACAACAACTGCATCCTCATGATCCGGCTACCCTCTGGGGAGTCCATGCGGGAGCGCTTCCCCGCCGACGCCCCTCTGCGCAGCGTGATGGAGCACATCTCCGGGCGCTACCCCTCCCTGGCCTCCTTTTCGCTCCTCCAGGGGTTCCCACGGAAACGCTTTGGGGATGCGGAGCTGGCTTGCTCCCTGCGCTCCCTGGGCCTCACGCCCAACGCCGCCCTCTGTATCCAGACCACGCCCCCAGAGACACCCCAGGATCCGGCCAGCCCAGCTGATCGCCTCTTATTGGGTCAGGAGGAGGTGGTAGTTGCACCCCCTGCGCTTCCCCAGCCACAGCAGCCCCAGATACCAGAgctggaggaggaagggatggaggatccTGCTCGGCCCCCACCTCTGCCTCACCAGCTGTGGGAAGAAGCAGTGGGCTACGCAGGCATCCCTGGTGTTGGCCCCCCAATGACTGGACCTTCTCACTCCTGGGGACGGGGCCAGAAGCTGAATCCTGGTGATGCAGAGGAGGCTGCCAGCTCAGACGATGAAGAGATGCCAGAGGGGGGTAGAGAGCCGTACTTCCTCCTCAATGGTATGCCCCGATTACCCTTCTTCCCAGAGAACCGGCTGCGTGGAGGGCTGGAGCCCAGACACCACTGGCCAGACCAGGGCAACAGACTTAGGGAGGGGGTGGCAGAGGACCCAGCAGTGGAGCCAGAAGAGGCTGCAGGTTGTGTGGTGCCGGGGGCAGCGGGCCAGGCTGCAGTAGAGCGCCTCCAGAGAGCTGCCCAGGATGACCCCCAGGCCACTCAGGGTCACCCATCCCCCCCCAAGAAACCCTTCAGGACGCCCAGCGTCCCCTCTCTCTGTGCAATGGCCACCCGGGCCACAGTCAACCTCATGACAGCTCCCAGCATGCAGTACAGCAGCAGTCTGTCGTGTCTGACCCCTGAACTGGCCGAGCTCCTGCTCAGTCACATGTCCCGCGAGAGGCTCCTTCGCCCGCGCACCCTGGAACTCTTTTTCGGCTGCCCGATGCAGAAGTTTGTCCTCAACTGCTACCCGTACTCCACCAACGAGCTGCTCCGGCAGCTACGGGCCTTCACTGCACTGAAGCACCTGAGCCTGGTCAACTCTCCTCTCATCACAGACGCAGGCCTCTCTGTGCTGTGCAGCCTACTGAAACTGCAGCACCTGAACCTGGCCTCATGTAGCAAGCTAACAGACTCCTGTCTGCAACACATCACAGGCTTGAAGAGCCTGTCTTTCCTGTCGCTAGACCAGACCAAAGTAAGCGATGTAGGGATGGTGCTGTACCTGCAGTCTGCTCCTTCGACACTCACCCAGCTTAGTCTGAACCAGACCTCTATCACGGAGGCCACCCTGGCAGCGCTGCCCGCCTGTGTGCCCCAGCTACGACTGCTCAGCATCAAACACACTAAGGTGAGTGACGTGTCGGCCCTGGCTGAGCTTCCCAGCCTGCAGACCCTCTACCTGGACGGCACGGCGGTGAGGGAGGGCTCTCTGGAGCACCTGGCCACCCACTCCGCCCTCTCTGCCCTCAGCGTGGCTGGCATCTCCGTCGCTGATGGCAACAACATTCTCCAGATCATCTCAGGTCTCCGGCTGACCCAGCTGACCCTGCCTGGACGCCACTCGGTGACGGACGCCGGCCTGGCCTTCCTCTCCAGACTGTCCCTACTGTCCGAGCTGGACCTAACTGACTACACATACGTCACCGACCAGGGGGTCACCCAGCTGGCTACCATGACCAGgcTGAAGAGGCTGTCACTCAGCAACACGCAGGTGACGGACGCCGGGCTGCCCTCCCTGCACTGTCTGCAGGAGCTGCTGGAGCTGTGTCTGGACCGCACGGCCGTCACCAGCCGAGGAGTGGCCGCCCTCGTCACCGGTCTGCCACACCTGCAGGTATTAAGCTTGGCCAGTACTCAGGTGGGTGACACGGTCGTGAGGAGAGGTCTGGTCCACTGTGTTCAGCTCTTCAAGCTCAACCTGAGCCGGACACGCATCACTGACCACGGACTGAAGTTCCTGAAGTGCATGTGTCTGACCCAGGTGAACCTGGACGGCTCGGGCGTGACCCTATCGGGCATCGCCAACCTGATTGCCTCCTGTCCCCACATCACCAGCATCAGGGCCAGCAACCCGCGAGCCATCCCCCCTGACCAGGTCTCCGACGACAACGACGGTGACAATCAGTAGGGGGATGAGTAGTGACCCCGCCCAGCCCTTTCTGATGAGGCTTGGGTCAGCTAGCTAGTAGCTTCCGCTGTGCTCAACGGTATCAGCCCCATGTTTCTGCATCCAGCTGACAGGCTCAGCGTAGTCTGGGTGAAGAGAAACCCAGCTCTAACTGCACTGCTTCAACAACGGCTAGTGACACTACTCGCTCAATCACAAGTCCACCATACTAGCTGTCGAAACCTTAGAAGGGTGCCTTCTTGTGCTTCTAAAGGTCTAGATGGGAGCCCTGCTCCCTGTAGTTAATCACAACCACCATTAAAGTTATTACAATGAAGTCTCACATAAGTGTGCTATGTTGATCCCGGTGTAGGGTTCAGTTTTCCCTAAACGCAGAttttgggtcagttttgcatttctccCGCTAATGGTTCAGTGTAGGATTGGGGAGGGATAGCTGATCCTTGATCTGTACCTAAGGGAAACTTCACTCCAGAACGTAGATCCCCCTGGGCCTGGCAGAGGTATAGTATGCATGATGTCCAATCTACATAAAGCAAAGGAACTATGATTAGGAATTGATCAGGGATATAACCTTCATATATCACAGCATGTTTTCACCCAGATTTTTCCGCCTGAATTCTCTAATGAATCAGTTAACACTACTGAGGTCCAACATTTACTTACTTCCTGTATTGTCAAAAAAACAAATGTTGGGGGTGGTTCAAGCTTAGGCAGGTTCTATctgcagttgaagtaggaagcttacatacgccttagccaaatacatttaaactcagtttttcacaattcctgacatttaatcctagtagaaattccctgttttaggtcagttaggatcaccactttattttaagaatgtgaaatatcagaataatagtgtagagagggatttatttcagcttttatttatttcatcacattcccagtgggtcagaagtttacatacactcaattagtatttggtagcattgccttaaacaatttaaacttaGGTCAAACGTCGTTTCGGGTAAGCTTCacacaaaaagttgggtgaattttggcccattcctcctgacagagctggggtaactgagtcaggtttgtaggcctccttgctcgcccacagattttctataggattgaggtcagggttttgtgatggccactccaataggcTGGAgacgactttgttgtccttaagtaattttgccacagctttggaagtatgcttggggtcattgtccatttggaagacccatttgcgaccaagctttaacttcctgactcaaaattgtcaattagcctatcagacgcttctaaaggcatgacataattttctgaatttttccaagctgtttaaaggcacagtcaacttctgacccgctggcaTTGTGatacaatctgtctgtaaacattacttctcatgcacaaagtagatgtcctaaatgacttgccaaaactatagtttgttaacaagacatttgtggagtggttggaaaacaagttttaatgactacaactgTACTAACACTTGATTAGCCAGCAACTGGAAAGCTAAGCATTGTTGGTGGTTGTGGAGAGGTTGACTTCTCAAAGCAAATAGTGGGCCATGATATGGGTTGCATAATGAGGGGTTGGGCTCAGCAGGAATCCAAAGTATCTCCGTTCATAATTTTGCTTCATGTTATGTTTACACAGATGTAAAATACAGTTTATTTTCTCAATGTTTTAGATAAGTGCACCGTATTCCCTACATTGTCAAAGGAAAATGCAGAATTAAAAGCTGCATTTTGGAAGATGTTGTATTTGTTCAAAGACCCCAAAATATAAGACCGTAAATATTCAAATGGTCAATTCAGTAATTTATTCAGACAAATTGTTATTGCAATacgttaaataaaaataaaggcATAATTAATGCTCTTCTGCACAAA

Function

NR:

description
uncharacterized protein LOC110489907 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562891.2 False 5055 mRNA 0.52 17 27332486 27350841
XM_021562892.2 True 5052 mRNA 0.52 17 27332486 27350841

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-66 NA coding upstream 238923 27093489 ~ 27093563 (+)
kif9 kif9 coding upstream 358437 26960749 ~ 26974049 (+)
LOC110489897 LOC100380682 coding upstream 403704 26923894 ~ 26928782 (+)
LOC110489896 LOC106590184 coding upstream 413838 26860119 ~ 26918648 (+)
topbp1 LOC106590185 coding upstream 483454 26811022 ~ 26849032 (+)
chpf2 LOC106590171 coding downstream 10962 27361803 ~ 27369326 (+)
asap1b LOC106590164 coding downstream 101439 27452280 ~ 27519315 (+)
fam49bb LOC106590167 coding downstream 173284 27524125 ~ 27563497 (+)
LOC110489920 LOC106590161 coding downstream 420776 27771617 ~ 27795387 (+)
vps41 vps41 coding downstream 585302 27936143 ~ 27951787 (+)
G1275750 NA non-coding upstream 8956 27323317 ~ 27323530 (+)
G1275747 NA non-coding upstream 14906 27317131 ~ 27317580 (+)
G1275746 NA non-coding upstream 15674 27316355 ~ 27316812 (+)
G1275741 NA non-coding upstream 24084 27308178 ~ 27308402 (+)
G1275735 NA non-coding upstream 32587 27299681 ~ 27299899 (+)
G1275758 NA non-coding downstream 23741 27374582 ~ 27375349 (+)
G1275787 LOC106590168 non-coding downstream 75123 27425964 ~ 27426470 (+)
G1275823 NA non-coding downstream 146107 27496948 ~ 27497356 (+)
G1275700 NA non-coding downstream 168784 27519625 ~ 27520100 (+)
G1275871 NA non-coding downstream 246459 27597300 ~ 27597553 (+)
G1275572 NA other upstream 230459 27101309 ~ 27102027 (+)
G1274830 NA other upstream 890099 26440011 ~ 26442387 (+)
G1274765 NA other upstream 967340 26364278 ~ 26365146 (+)
rbis cssa29h8orf59 other upstream 2357773 24968304 ~ 24976522 (+)
G1276288 NA other downstream 502777 27853618 ~ 27854013 (+)
G1276733 NA other downstream 839345 28190186 ~ 28256406 (+)
G1277159 NA other downstream 1223475 28574316 ~ 28624218 (+)
G1277279 NA other downstream 1464525 28815366 ~ 28815810 (+)
G1279349 NA other downstream 2952192 30303033 ~ 30303419 (+)

Expression


Co-expression Network