fam49bb (LOC106590167)


Basic Information

Item Value
gene id fam49bb
gene name LOC106590167
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 27524125 ~ 27563497 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562911.2
CTGTCTGTTGCACAATGACGTTAGACCAACCCGGAAATAGCGGACAACTGAAGCGAATCGTTATTCTTTGAGCTGCTAGCGTGGTAGCTACCAGGTGGAGGACGACTGCCTTTTCTTGCACTTCCAGCATTACGAACCTGACCTCTGCTGGAGGACTGTGACCTTGGCCACCCGCCAGGCTCGGCCTCCTTCCTCCTGACTGACACCTCCAGAGCTTCTGCTGGCATCGTAACATGGGGAACCTGCTAAAAGTTCTGACTTGCACAGATCTGGAACAAGAGCCCAATTTTTTCCTCGATTTTGAAAATGCTCAGCCCACGGATGCAGAACGAGAGGTGTGGGAGCAGGTGGACCTGGTGCTGAAGGACGCTCGGGGAGTCCTGGACGAACTGCAAGCGTACAAGGGAGCGGGTCAGGAGATTAGAGAGGCAATCCAGAACCCCAGCGACGAGGCGTTACAGGAGGCGGCATGGGCGGCCGTGGTCCACCTGGTGGGGAAACTCAAGAAGTTCTACCAGTTCTCCCAGAGATTAGAGGCGGCGCTGCACAGCCTGCTGGGACCCCTGACCAGTGAGACTTACGACGACCCCACTCAGCACCTGGAGCGTGAGCAGGCACTGGCCAAGCAGTTCGCCGAGATCCTGCACTTCACACTGCGCTTCGACGAGCTCAAAATGACTAACCCTGCCATCCAGAATGACTTCAGCTATTACAGGAGAACGTTGAGCCGCATGCGGATCAACAATACACCGgCAGAGGGGGAGAATGAAGTCAACAACGAGATGGCCAACCGGATATCTCTGTTCTACGCCGACGCCACGCCTATGTTGAAGACCTTAAGCGACAGCACGACAAAGTTTGTCTCAGAGAATAAGAACTTACCCATCGAGAACACGACAGACTGCCTAAGCACAATGGCGAGCGTGTGCAAAGTCATGTTGGAAACGCCGGAGTACCGAAGCCGCTTCACCAGTGAGGAGACGGTCTCATTCTGCCTGCGCGTCATGGTGGGCGTCATCATCCTGTACGACTACGTGCATCCTGTCGGAGCCTTCTCCAAGTCCTCCAAAATCGATATGAAAGGGTGCATCAAGGTCCTCCGAGATCAACCGCCCAACAGCGTAGAAGGCCTTTTAAACGCTCTCAGGTACACAACCAAGCATTTGAATGATGAATCGACCAACAAGACCATCAAGAGCATGCTGCAGCAGCAGTAGGACTGAAACTCTGGTACAACCACTCGCCTCACACCCGGTTCAGGAGAcatcgactctctctctctctctcactctctctctctctctctctctctctctctctctcaccaacgaCGTCGGTGCACAGAATGTCTTTTTCTTcttgttttcttttcttttaaATGGAGTAAGAGCTGCATCTACACCCCCTTTTTATAACGCAAAATGCTACTGCCATTATGTACGTCTTTTCTGTGCCAAAAAGATGTTGCTGAGATTTAAATGTTTTCCATAAAGGCCATACAACAAGATGGCAGCTATGGAAGCATTGTGggttcaatttttttattttttatagtttTTGTTTCCCTGTGTAAGGGATGGGAGTGCTTTGACTTGAAAATTTAAAAAAGAGATATATAGAGAAATATATTATTTTTGTTTGATTTATTATTTAATATTACATCTTCTGCATGACGAAATTACGTATTTTtcttctatttaaaaaaaaaaaaacgtatggtTCAAGTTTAATTTGTCCGCTTAATTGTATGTTTTAATGTTTTGTTCTCTGAATGGTACTCGGCGGAATTGAGATTATTGAAAAGATAGTACTGTTAatgttatcttttttttttataggtTTTGATTTGTTGTATGCCATTTTTCatagttgtattttttattttaaaatttcAAACTGTGACGTGTGCAAATCAATTTAAAATTGGGAGTCTGTACTGTTGTTAACAGTATGTTGCCGCTGGAAAAAATAAACAGAGAACTTGTTTTCTACAAA
>XM_021562912.2
AAGTGGTGGTGGACTCTGTATCCTGGTCGCTCTTGATAGTCGTTTTCGTCCTGTGATATACCAGTGAGACAAGACCATTCAATGAATTAACAGGAATAACTGTCCGTCGCGATGTGATACACGGACCATTCTGTTCGCCAATCTCTGATCATAGTTAACCTGACCTCTGCTGGAGGACTGTGACCTTGGCCACCCGCCAGGCTCGGCCTCCTTCCTCCTGACTGACACCTCCAGAGCTTCTGCTGGCATCGTAACATGGGGAACCTGCTAAAAGTTCTGACTTGCACAGATCTGGAACAAGAGCCCAATTTTTTCCTCGATTTTGAAAATGCTCAGCCCACGGATGCAGAACGAGAGGTGTGGGAGCAGGTGGACCTGGTGCTGAAGGACGCTCGGGGAGTCCTGGACGAACTGCAAGCGTACAAGGGAGCGGGTCAGGAGATTAGAGAGGCAATCCAGAACCCCAGCGACGAGGCGTTACAGGAGGCGGCATGGGCGGCCGTGGTCCACCTGGTGGGGAAACTCAAGAAGTTCTACCAGTTCTCCCAGAGATTAGAGGCGGCGCTGCACAGCCTGCTGGGACCCCTGACCAGTGAGACTTACGACGACCCCACTCAGCACCTGGAGCGTGAGCAGGCACTGGCCAAGCAGTTCGCCGAGATCCTGCACTTCACACTGCGCTTCGACGAGCTCAAAATGACTAACCCTGCCATCCAGAATGACTTCAGCTATTACAGGAGAACGTTGAGCCGCATGCGGATCAACAATACACCGgCAGAGGGGGAGAATGAAGTCAACAACGAGATGGCCAACCGGATATCTCTGTTCTACGCCGACGCCACGCCTATGTTGAAGACCTTAAGCGACAGCACGACAAAGTTTGTCTCAGAGAATAAGAACTTACCCATCGAGAACACGACAGACTGCCTAAGCACAATGGCGAGCGTGTGCAAAGTCATGTTGGAAACGCCGGAGTACCGAAGCCGCTTCACCAGTGAGGAGACGGTCTCATTCTGCCTGCGCGTCATGGTGGGCGTCATCATCCTGTACGACTACGTGCATCCTGTCGGAGCCTTCTCCAAGTCCTCCAAAATCGATATGAAAGGGTGCATCAAGGTCCTCCGAGATCAACCGCCCAACAGCGTAGAAGGCCTTTTAAACGCTCTCAGGTACACAACCAAGCATTTGAATGATGAATCGACCAACAAGACCATCAAGAGCATGCTGCAGCAGCAGTAGGACTGAAACTCTGGTACAACCACTCGCCTCACACCCGGTTCAGGAGAcatcgactctctctctctctctcactctctctctctctctctctctctctctctctctcaccaacgaCGTCGGTGCACAGAATGTCTTTTTCTTcttgttttcttttcttttaaATGGAGTAAGAGCTGCATCTACACCCCCTTTTTATAACGCAAAATGCTACTGCCATTATGTACGTCTTTTCTGTGCCAAAAAGATGTTGCTGAGATTTAAATGTTTTCCATAAAGGCCATACAACAAGATGGCAGCTATGGAAGCATTGTGggttcaatttttttattttttatagtttTTGTTTCCCTGTGTAAGGGATGGGAGTGCTTTGACTTGAAAATTTAAAAAAGAGATATATAGAGAAATATATTATTTTTGTTTGATTTATTATTTAATATTACATCTTCTGCATGACGAAATTACGTATTTTtcttctatttaaaaaaaaaaaaacgtatggtTCAAGTTTAATTTGTCCGCTTAATTGTATGTTTTAATGTTTTGTTCTCTGAATGGTACTCGGCGGAATTGAGATTATTGAAAAGATAGTACTGTTAatgttatcttttttttttataggtTTTGATTTGTTGTATGCCATTTTTCatagttgtattttttattttaaaatttcAAACTGTGACGTGTGCAAATCAATTTAAAATTGGGAGTCTGTACTGTTGTTAACAGTATGTTGCCGCTGGAAAAAATAAACAGAGAACTTGTTTTCTACAAA
>XM_036944207.1
CGAAGTACACACTGAATGAGAGGAAGTGTTGCACAATAGGAAGTGGTGTGCGTCTGGCCGCTGTGCCTCCCAGTTTCTACAAGACTGCTGCAACGTTGCCCTTCTCAAGAAACCCAGTCTGCATGAGAATCACGAAGGGCTGCACCTGTGACTGACTGTTGTCCAATAAATTCTCAACCTCTGAACCTGACCTCTGCTGGAGGACTGTGACCTTGGCCACCCGCCAGGCTCGGCCTCCTTCCTCCTGACTGACACCTCCAGAGCTTCTGCTGGCATCGTAACATGGGGAACCTGCTAAAAGTTCTGACTTGCACAGATCTGGAACAAGAGCCCAATTTTTTCCTCGATTTTGAAAATGCTCAGCCCACGGATGCAGAACGAGAGGTGTGGGAGCAGGTGGACCTGGTGCTGAAGGACGCTCGGGGAGTCCTGGACGAACTGCAAGCGTACAAGGGAGCGGGTCAGGAGATTAGAGAGGCAATCCAGAACCCCAGCGACGAGGCGTTACAGGAGGCGGCATGGGCGGCCGTGGTCCACCTGGTGGGGAAACTCAAGAAGTTCTACCAGTTCTCCCAGAGATTAGAGGCGGCGCTGCACAGCCTGCTGGGACCCCTGACCAGTGAGACTTACGACGACCCCACTCAGCACCTGGAGCGTGAGCAGGCACTGGCCAAGCAGTTCGCCGAGATCCTGCACTTCACACTGCGCTTCGACGAGCTCAAAATGACTAACCCTGCCATCCAGAATGACTTCAGCTATTACAGGAGAACGTTGAGCCGCATGCGGATCAACAATACACCGgCAGAGGGGGAGAATGAAGTCAACAACGAGATGGCCAACCGGATATCTCTGTTCTACGCCGACGCCACGCCTATGTTGAAGACCTTAAGCGACAGCACGACAAAGTTTGTCTCAGAGAATAAGAACTTACCCATCGAGAACACGACAGACTGCCTAAGCACAATGGCGAGCGTGTGCAAAGTCATGTTGGAAACGCCGGAGTACCGAAGCCGCTTCACCAGTGAGGAGACGGTCTCATTCTGCCTGCGCGTCATGGTGGGCGTCATCATCCTGTACGACTACGTGCATCCTGTCGGAGCCTTCTCCAAGTCCTCCAAAATCGATATGAAAGGGTGCATCAAGGTCCTCCGAGATCAACCGCCCAACAGCGTAGAAGGCCTTTTAAACGCTCTCAGGTACACAACCAAGCATTTGAATGATGAATCGACCAACAAGACCATCAAGAGCATGCTGCAGCAGCAGTAGGACTGAAACTCTGGTACAACCACTCGCCTCACACCCGGTTCAGGAGAcatcgactctctctctctctctcactctctctctctctctctctctctctctctctctcaccaacgaCGTCGGTGCACAGAATGTCTTTTTCTTcttgttttcttttcttttaaATGGAGTAAGAGCTGCATCTACACCCCCTTTTTATAACGCAAAATGCTACTGCCATTATGTACGTCTTTTCTGTGCCAAAAAGATGTTGCTGAGATTTAAATGTTTTCCATAAAGGCCATACAACAAGATGGCAGCTATGGAAGCATTGTGggttcaatttttttattttttatagtttTTGTTTCCCTGTGTAAGGGATGGGAGTGCTTTGACTTGAAAATTTAAAAAAGAGATATATAGAGAAATATATTATTTTTGTTTGATTTATTATTTAATATTACATCTTCTGCATGACGAAATTACGTATTTTtcttctatttaaaaaaaaaaaaacgtatggtTCAAGTTTAATTTGTCCGCTTAATTGTATGTTTTAATGTTTTGTTCTCTGAATGGTACTCGGCGGAATTGAGATTATTGAAAAGATAGTACTGTTAatgttatcttttttttttataggtTTTGATTTGTTGTATGCCATTTTTCatagttgtattttttattttaaaatttcAAACTGTGACGTGTGCAAATCAATTTAAAATTGGGAGTCTGTACTGTTGTTAACAGTATGTTGCCGCTGGAAAAAATAAACAGAGAACTTGTTTTCTACAAA

Function

NR:

description
protein FAM49B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562911.2 False 1995 mRNA 0.46 12 27524125 27563497
XM_021562912.2 False 2017 mRNA 0.46 12 27526811 27563497
XM_036944207.1 True 2044 mRNA 0.46 12 27539363 27563497

Neighbor

gene id symbol gene type direction distance location
asap1b LOC106590164 coding upstream 4810 27452280 ~ 27519315 (+)
chpf2 LOC106590171 coding upstream 154799 27361803 ~ 27369326 (+)
LOC110489907 LOC106590173 coding upstream 173284 27332486 ~ 27350841 (+)
trnaa-ugc-66 NA coding upstream 430562 27093489 ~ 27093563 (+)
kif9 kif9 coding upstream 550076 26960749 ~ 26974049 (+)
LOC110489920 LOC106590161 coding downstream 208120 27771617 ~ 27795387 (+)
vps41 vps41 coding downstream 372646 27936143 ~ 27951787 (+)
LOC110489924 LOC106590156 coding downstream 389816 27953313 ~ 27964057 (+)
lypla1 lypa1 coding downstream 485449 28048946 ~ 28051642 (+)
LOC110489930 LOC106590073 coding downstream 611988 28175485 ~ 28189640 (+)
G1275700 NA non-coding upstream 4025 27519625 ~ 27520100 (+)
G1275823 NA non-coding upstream 26769 27496948 ~ 27497356 (+)
G1275787 LOC106590168 non-coding upstream 97655 27425964 ~ 27426470 (+)
G1275758 NA non-coding upstream 148776 27374582 ~ 27375349 (+)
G1275750 NA non-coding upstream 200595 27323317 ~ 27323530 (+)
G1275871 NA non-coding downstream 33803 27597300 ~ 27597553 (+)
G1276132 NA non-coding downstream 75056 27638553 ~ 27646636 (+)
G1276141 NA non-coding downstream 103929 27667426 ~ 27667663 (+)
G1276146 NA non-coding downstream 108021 27671518 ~ 27671766 (+)
G1276147 NA non-coding downstream 108357 27671854 ~ 27672073 (+)
G1275572 NA other upstream 422098 27101309 ~ 27102027 (+)
G1274830 NA other upstream 1081738 26440011 ~ 26442387 (+)
G1274765 NA other upstream 1158979 26364278 ~ 26365146 (+)
rbis cssa29h8orf59 other upstream 2549412 24968304 ~ 24976522 (+)
G1276288 NA other downstream 290121 27853618 ~ 27854013 (+)
G1276733 NA other downstream 626689 28190186 ~ 28256406 (+)
G1277159 NA other downstream 1010819 28574316 ~ 28624218 (+)
G1277279 NA other downstream 1251869 28815366 ~ 28815810 (+)
G1279349 NA other downstream 2739536 30303033 ~ 30303419 (+)

Expression


Co-expression Network