LOC110489920 (LOC106590161)


Basic Information

Item Value
gene id LOC110489920
gene name LOC106590161
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 27771617 ~ 27795387 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562933.2
CGCTAATGTTGTTCACGACACACACGTGGTTTGACGCCAGTCAAGGCGGGATGGCAGGCTGTCGAACGCTCAGAATATTATACTACAAGAGCTGTCTCTGGAATTCCCGATTATTGTTATGATTCAAGTCGAGACCTTATCGCTGGATTTTCTGTCTAATTTTCATGCAGCTAGCTGTCATTTTCTCCTTCACCGATGTCGAGCAATGGAGAAGCGCCCATCTGCAATTGCTGATGACCTTCTCCTCTGCACACCGAAGCATATTTCTTGGAAACTGCGAAGCGGGGAGCGTTCTGACTTGTAACGTACATTATCATCAATTGAATTGACATTTATTTCACGAGAAGTGAAGTGCCTACAATCTATTCTAccaacacatttttttaaatagtcaAGACAGAGGCAGATGCCCCTCGTTCTGTCACCCCGGCTACACTATGGTGGAATTTCCATCTCTCATTCCTTATTGGCCTCTCATCCGCTTTCTGGTGCCTTTGGCTATTACCAATGTAGCCATCGACCTCGGCGAACAGGCTCTTAACCGGGGTTTAGCAGGTTTTAAAGAGGATGCAGTTGAGATGCTAGCCAGCTACGGGCTGGCTTATTCGCTAATGAAGTTCTTCACTGGGCCCATGAGTGACTTCAAGAACGTGGGCCTGGTGTTTGTCAACAGCAAGAGGGACAGGGCCAAGGCTGTGCTTTGCATGGCGGTAGCAGGCACAATAGCATTCATCCTTCATGTTCTCATAGCCCATACAGACTTAGGCTACTACATCATCAATAAGCTGCACCATGTGGACGACTCCGTGGGCAACAAGACCAGGAGGGCTTTCCTCTACCTGGCCGCTTTCCCTCTGCTGGACGCCATGgcTTGGATCCATGCTGGAATTCTCCTTAAGCACAAATACAGCGTCATCGTAGGCTCTGCCTCCATCTCTGATGTTATCGCTCAGATTGTGTTTGTGTCCATCCTGCTGCACAGTAACCTGCCGTGTGTGGAGCCCCTGCTCATCCCCATCCTCTCACTGTACATGGGAGCCCTGGTGCGCTTCACCATCGTGGGCCTAGGCTACTACTACAACATCCACGACAAGATCCCCGACTCCAGTGGACTTGACGTGGGGGGAGATGCCACCATCAGGAAGATGTTGAGTTTCTGGTGGCCTCTGGCCCTCATCCTGGCTACCCAGCGGATCAGCAGGCCCATTGTCAACCTCTTTGTGTCCCGGGACCTCAAGGGGAGCAGCGAAGCTACTGAGGCAGTGGCTGTGCTCACTGCCACCTACCCTGTGGGTCACATGCCCTatggctggctgactgaactGAGAGCTGTCTACCCCGCTTTCGACAAGACCAATCCCAGCAATAAGCTCATATCCGGCACACCGGTCACAAAGACTCATATCAAAAAGTTTACAGCCTGTTGTTTGGTGCTATCGCTCACGCTCTGCTTTGTGGTGTTCTGGACCCCTCACATCTCAGAGAAGATTCTAGTGAATGTGATTGGTGTGGACCTTGCCTTCGCTGAGCTCTGTGTGGTTCCACTAAGGATTTTCTCCTTCTTCCCTCTGCCAGTGACAGTCCGGGCCCACCTGACTGGCTGGCTCATGACCCTGAAGAAGACCTTTGTGCTGGCCCCCAGCTCTGTGCTCCGCATCATCGTCCTCATCACAAGCCTGGTCGTGCTGCCTTATATGGGTGCGCACCGACCTGACGCACATAAGCGCCTCTAGAACTGACAGACCCAGCATGCCACAGCGTCATCAACTACAGCAACTCATTTGCATAACATTGTGTGATATGCTGAGAGTGACGAaatcagcttctatctccaggctatcatcagactgttaaacaaacAGTCACCACCAGCCGGCCTCCGCACCTTAGAGAATgatgccctatgtacatagtcattgaacactggtcagtttaataatgtttacataccgttTTACCCAGTACATACATACAATTTATATTCTGGTCTCGGACATTGATTGTTCTGATATTCCTTAATTAAAATTTTTATGGattgtgtgtaatgtttatttttgtgttttactgcactgttgcagagctagaaacaagcattttgctgcacctacGACAACATCCTCAAATCGTTGTATCGACCAAAAAAACTTTGATTTGACACATTACAATATGAATTATGTTCTCTTCTAAAACGGGATACCTAAAGATGGTTAATTTGAATTCAGCAAACTTTGTTTATTGCTTAGTGTGACATTTTGATTGGACTCCAATCTGACACGGAGTTGAGGAGCTGCTCTCTGTTTCATGATAAGCAAACatgaatagaaatgtattccGATAAGATTTTAAATCAGAAATATGTAAATTGTCACCGTTCACCACATCACCTACCATCAAATGCAGACTTTGCAAATTCAGTGTGAGGGTATGAGTTCTGTGGTTTTATATTTAGCCAATAGCCTCATTAAATCTTTAGACCGGTTCTTTGTGCATGGTTTTCAATTAAACATAAGGTagcataatatacagtaccagtgaaaagtttggacacctactcatt
>XM_021562932.2
TAATGTTGTTCACGACACACACGTGGTTTGACGCCAGTCAAGGCGGGATGGCAGGCTGTCGAACGCTCAGAATATTATACTACAAGAGCTGTCTCTGGAATTCCCGATTATTGTTATGATTCAAGTCGAGACCTTATCGCTGGATTTTCTGTCTAATTTTCATGCAGCTAGCTGTCATTTTCTCCTTCACCGATGTCGAGCAATGGAGAAGCGCCCATCTGCAATTGCTGATGACCTTCTCCTCTGCACACCGAAGCATATTTCTTGGAAACTGCGAAGCGGGGAGCGTTCTGACTTGTAACGTACATTATCATCAATTGAATTGACATTTATTTCACGAGAAGTGAAGTGCCTACAATCTATTCTAccaacacatttttttaaatagtcaAGACAGAGGCAGATGCCCCTCGTTCTGTCACCCCGGCTACACTATGGTGGAATTTCCATCTCTCATTCCTTATTGGCCTCTCATCCGCTTTCTGGTGCCTTTGGCTATTACCAATGTAGCCATCGACCTCGGCGAACAGGCTCTTAACCGGGGTTTAGCAGGTTTTAAAGAGGATGCAGTTGAGATGCTAGCCAGCTACGGGCTGGCTTATTCGCTAATGAAGTTCTTCACTGGGCCCATGAGTGACTTCAAGAACGTGGGCCTGGTGTTTGTCAACAGCAAGAGGGACAGGGCCAAGGCTGTGCTTTGCATGGCGGTAGCAGGCACAATAGCATTCATCCTTCATGTTCTCATAGCCCATACAGACTTAGGCTACTACATCATCAATAAGCTGCACCATGTGGACGACTCCGTGGGCAACAAGACCAGGAGGGCTTTCCTCTACCTGGCCGCTTTCCCTCTGCTGGACGCCATGgcTTGGATCCATGCTGGAATTCTCCTTAAGCACAAATACAGCGTCATCGTAGGCTCTGCCTCCATCTCTGATGTTATCGCTCAGATTGTGTTTGTGTCCATCCTGCTGCACAGTAACCTGCCGTGTGTGGAGCCCCTGCTCATCCCCATCCTCTCACTGTACATGGGAGCCCTGGTGCGCTTCACCATCGTGGGCCTAGGCTACTACTACAACATCCACGACAAGATCCCCGACTCCAGTGGACTTGACGTGGGGGGAGATGCCACCATCAGGAAGATGTTGAGTTTCTGGTGGCCTCTGGCCCTCATCCTGGCTACCCAGCGGATCAGCAGGCCCATTGTCAACCTCTTTGTGTCCCGGGACCTCAAGGGGAGCAGCGAAGCTACTGAGGCAGTGGCTGTGCTCACTGCCACCTACCCTGTGGGTCACATGCCCTatggctggctgactgaactGAGAGCTGTCTACCCCGCTTTCGACAAGACCAATCCCAGCAATAAGCTCATATCCGGCACACCGGTCACAAAGACTCATATCAAAAAGTTTACAGCCTGTTGTTTGGTGCTATCGCTCACGCTCTGCTTTGTGGTGTTCTGGACCCCTCACATCTCAGAGAAGATTCTAGTGAATGTGATTGGTGTGGACCTTGCCTTCGCTGAGCTCTGTGTGGTTCCACTAAGGATTTTCTCCTTCTTCCCTCTGCCAGTGACAGTCCGGGCCCACCTGACTGGCTGGCTCATGACCCTGAAGAAGACCTTTGTGCTGGCCCCCAGCTCTGTGCTCCGCATCATCGTCCTCATCACAAGCCTGGTCGTGCTGCCTTATATGGGTGTCCACGGGGCCACACTGGGGGTTGGGTCTCTGTTGGCTGGTTTCATAGGGGAGTCTACCATGGTGGCCATTGCGGCCTGCTATGTCTATCGAAAACAGAAAAACAATGAGATGGCCAGTGAgctggtggtggagggagaggactCGGCACCTATGAGCGAGGTGTGTTCCAGAACTCAGATGGATGCCATTGAGGAGCTCCAGGAGGAGGAGCTCCAGGAGTAGAggcacatggagagagagagagacagacaggagaaattGGAGCTGAGCTCCATTAGAAAAAAGGGAATTCCAGCGGAAGAGGACCATGGGTAGGCCCCAATACCGGACCTGAGAGAAGAACACAGATTGCTTAATAGGCTCCTTGAATGGATGATCAGCCATGATGAGGAACACGCACTGTACAGACAAGCCATGCACTGAAATCCATGTAAATACCTTCCAATCCTCTGGACAATTAATGTATTCATGAACTGCAGAAATAGGATAAGTATTAATCACTTTCATCATCGTGTTACTGCTAGTTGAGCATGGGAAATAACTGATGTAGGAAAACCGGTCCTCAGCTAAGGGAAATGTGTTGTGGAGAAATTGAAACATTATTTTACTTGGATAATCAAGTAAAAGAAGCAcagctttattttattttaatgctgGAACATTTTAAAAAGGACCTGTTGAGTTGGGCAAGTGTATTTTACATTGAATGGTGTTCAAGAACTAGAGTTCTGTTTTATATAGGCGACGGGAATTTGCAAAGTGTATATTAACTTGCAGAAAGGGGTCGGGAATCCCTCAGTATCTTAgtgggtgtgtgtgactgtgtttgcATCATTATGCTCGTCCACTTTATGCAGTCTGGGAATGTTTCATTTTGACAAGTATAGCTATTTTCTTAATAGCACATTCTGACTGTTCGATGTACATATTGTAAAGGCATTATATTATTTGGCAAATAAATTGTTATTTAAAGAGCC
>XM_036944212.1
ACAACCTAGTTTGCGTAGGATATGTGTCGGTAGCCAACATTGGGGGTGAGGCAAGGCGATGAACGTCAAGCAGCTAACTAGCTATCTGGCACGGTCAAAACACTGTCGCGCTAACTAAACCTTGCTTGATTTGACTACTATGTTGACTTGAGCTAAGCTTTCAACATGGTACAGAATGTTTTTATCTATCCACCAGACCACCTCCACTACTAGAAGTAGTGGCCCACAGTTACATAATTTGACCATTCTAAGCTTAGAGAATACAAAACAGACGCGTGCATAAATGTATGTTTGTGTAAATGAGTGCTACTAGATATTTTGATGTTGGTAAACAGTAAACAAATTCTGCTACAGACAAATTATCTAGCTAGCAGCTGATGTAACCCATATTTAGACAATGGCTGCTCTTCTGTgtttatatcagtggaggctcatcatcctcagtgaatttcataaataaaaacctttttagataaaactatgctaaatatattcacatgtcaccaaataatggattaaaacacactgtatgcaatgaaggtctacagtatcCTAAGCAGCACTCTAgtgtagcaccatggtgtagctggaggacagctagcttctgtcttcctctgggtacattgacttcaatacaaaacctacgaggctcatggttctcaccccttccatagactCACACAGTaagacaacttccggaggacgtcctccaacctatcagagctcttgcagcatgaactgacatgttgcccacccaatcaaaggatcagagaatgaacctAGTACTGAAAGCACAAGTTACagatagctagcactgcagtgcataaaatgtggtgagtagttgacccagagaaagaaaatagttgaacagttttgaacaaattgatttcttccaaaattaaggagaagtgagagagaaagctagCCATATTTCGTAGTATAAACGTTTTCACTTTCACTGTCTTAGTTAGCAttaaatgcagctagctagcttagcCTACTCAAAACACCCagctcacacagagagggaggctatattagctagctggatatggctatccaacacgggaactcttccaagtcaagGCTCTTAACCGGGGTTTAGCAGGTTTTAAAGAGGATGCAGTTGAGATGCTAGCCAGCTACGGGCTGGCTTATTCGCTAATGAAGTTCTTCACTGGGCCCATGAGTGACTTCAAGAACGTGGGCCTGGTGTTTGTCAACAGCAAGAGGGACAGGGCCAAGGCTGTGCTTTGCATGGCGGTAGCAGGCACAATAGCATTCATCCTTCATGTTCTCATAGCCCATACAGACTTAGGCTACTACATCATCAATAAGCTGCACCATGTGGACGACTCCGTGGGCAACAAGACCAGGAGGGCTTTCCTCTACCTGGCCGCTTTCCCTCTGCTGGACGCCATGgcTTGGATCCATGCTGGAATTCTCCTTAAGCACAAATACAGCGTCATCGTAGGCTCTGCCTCCATCTCTGATGTTATCGCTCAGATTGTGTTTGTGTCCATCCTGCTGCACAGTAACCTGCCGTGTGTGGAGCCCCTGCTCATCCCCATCCTCTCACTGTACATGGGAGCCCTGGTGCGCTTCACCATCGTGGGCCTAGGCTACTACTACAACATCCACGACAAGATCCCCGACTCCAGTGGACTTGACGTGGGGGGAGATGCCACCATCAGGAAGATGTTGAGTTTCTGGTGGCCTCTGGCCCTCATCCTGGCTACCCAGCGGATCAGCAGGCCCATTGTCAACCTCTTTGTGTCCCGGGACCTCAAGGGGAGCAGCGAAGCTACTGAGGCAGTGGCTGTGCTCACTGCCACCTACCCTGTGGGTCACATGCCCTatggctggctgactgaactGAGAGCTGTCTACCCCGCTTTCGACAAGACCAATCCCAGCAATAAGCTCATATCCGGCACACCGGTCACAAAGACTCATATCAAAAAGTTTACAGCCTGTTGTTTGGTGCTATCGCTCACGCTCTGCTTTGTGGTGTTCTGGACCCCTCACATCTCAGAGAAGATTCTAGTGAATGTGATTGGTGTGGACCTTGCCTTCGCTGAGCTCTGTGTGGTTCCACTAAGGATTTTCTCCTTCTTCCCTCTGCCAGTGACAGTCCGGGCCCACCTGACTGGCTGGCTCATGACCCTGAAGAAGACCTTTGTGCTGGCCCCCAGCTCTGTGCTCCGCATCATCGTCCTCATCACAAGCCTGGTCGTGCTGCCTTATATGGGTGTCCACGGGGCCACACTGGGGGTTGGGTCTCTGTTGGCTGGTTTCATAGGGGAGTCTACCATGGTGGCCATTGCGGCCTGCTATGTCTATCGAAAACAGAAAAACAATGAGATGGCCAGTGAgctggtggtggagggagaggactCGGCACCTATGAGCGAGGTGTGTTCCAGAACTCAGATGGATGCCATTGAGGAGCTCCAGGAGGAGGAGCTCCAGGAGTAGAggcacatggagagagagagagacagacaggagaaattGGAGCTGAGCTCCATTAGAAAAAAGGGAATTCCAGCGGAAGAGGACCATGGGTAGGCCCCAATACCGGACCTGAGAGAAGAACACAGATTGCTTAATAGGCTCCTTGAATGGATGATCAGCCATGATGAGGAACACGCACTGTACAGACAAGCCATGCACTGAAATCCATGTAAATACCTTCCAATCCTCTGGACAATTAATGTATTCATGAACTGCAGAAATAGGATAAGTATTAATCACTTTCATCATCGTGTTACTGCTAGTTGAGCATGGGAAATAACTGATGTAGGAAAACCGGTCCTCAGCTAAGGGAAATGTGTTGTGGAGAAATTGAAACATTATTTTACTTGGATAATCAAGTAAAAGAAGCAcagctttattttattttaatgctgGAACATTTTAAAAAGGACCTGTTGAGTTGGGCAAGTGTATTTTACATTGAATGGTGTTCAAGAACTAGAGTTCTGTTTTATATAGGCGACGGGAATTTGCAAAGTGTATATTAACTTGCAGAAAGGGGTCGGGAATCCCTCAGTATCTTAgtgggtgtgtgtgactgtgtttgcATCATTATGCTCGTCCACTTTATGCAGTCTGGGAATGTTTCATTTTGACAAGTATAGCTATTTTCTTAATAGCACATTCTGACTGTTCGATGTACATATTGTAAAGGCATTATATTATTTGGCAAATAAATTGTTATTTAAAGAGCC

Function

NR:

description
progressive ankylosis protein homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562933.2 False 2557 mRNA 0.47 11 27771617 27791233
XM_021562932.2 False 2677 mRNA 0.48 12 27771620 27795387
XM_036944212.1 True 3233 mRNA 0.46 12 27772179 27795387

Neighbor

gene id symbol gene type direction distance location
fam49bb LOC106590167 coding upstream 208120 27524125 ~ 27563497 (+)
asap1b LOC106590164 coding upstream 252302 27452280 ~ 27519315 (+)
chpf2 LOC106590171 coding upstream 402291 27361803 ~ 27369326 (+)
LOC110489907 LOC106590173 coding upstream 420776 27332486 ~ 27350841 (+)
trnaa-ugc-66 NA coding upstream 678054 27093489 ~ 27093563 (+)
vps41 vps41 coding downstream 140756 27936143 ~ 27951787 (+)
LOC110489924 LOC106590156 coding downstream 157926 27953313 ~ 27964057 (+)
lypla1 lypa1 coding downstream 253559 28048946 ~ 28051642 (+)
LOC110489930 LOC106590073 coding downstream 380098 28175485 ~ 28189640 (+)
LOC110489931 LOC106590150 coding downstream 405225 28200612 ~ 28204289 (+)
G1276246 NA non-coding upstream 2041 27769365 ~ 27769576 (+)
G1276244 NA non-coding upstream 3651 27767504 ~ 27767966 (+)
G1276232 NA non-coding upstream 19366 27752016 ~ 27752251 (+)
G1276147 NA non-coding upstream 99544 27671854 ~ 27672073 (+)
G1276146 NA non-coding upstream 99851 27671518 ~ 27671766 (+)
G1276259 NA non-coding downstream 12472 27807859 ~ 27808069 (+)
G1276274 NA non-coding downstream 40866 27836253 ~ 27837188 (+)
G1276287 NA non-coding downstream 57745 27853132 ~ 27853540 (+)
G1276317 NA non-coding downstream 115516 27910903 ~ 27911277 (+)
G1276471 NA non-coding downstream 137695 27933082 ~ 27933318 (+)
G1275572 NA other upstream 669590 27101309 ~ 27102027 (+)
kif9 kif9 other upstream 809391 26960749 ~ 26974049 (+)
G1274830 NA other upstream 1329230 26440011 ~ 26442387 (+)
G1274765 NA other upstream 1406471 26364278 ~ 26365146 (+)
rbis cssa29h8orf59 other upstream 2796904 24968304 ~ 24976522 (+)
G1276288 NA other downstream 58231 27853618 ~ 27854013 (+)
G1276733 NA other downstream 394799 28190186 ~ 28256406 (+)
G1277159 NA other downstream 778929 28574316 ~ 28624218 (+)
G1277279 NA other downstream 1019979 28815366 ~ 28815810 (+)
G1279349 NA other downstream 2507646 30303033 ~ 30303419 (+)

Expression


Co-expression Network