vps41 (vps41)


Basic Information

Item Value
gene id vps41
gene name vps41
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 27936143 ~ 27951787 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562937.2
TCTTCTGTCATGTGATTTTTTCTTTTGACTGGCACAGTTACGTTTGTCAACAAGGGGCTGCTTTGTGAATACACTGGTATTTGGTGAATTCGTTCAGTTTTCTTTTGAGCAACATTAGCTCAATATCTAAATTGACTAATGGACAGTTGCAAATAGAACGCTGTTTTGCTTTCTCTTCCAATCATCATGGCAGAAGTAGAGGAGAAGGGCAGGAAACCAAGTGAAGAATCCACAGATGAGTCTGAGGAGGAGGACAGTGTGGAGGAGCCTAAGCTGAAGTATGAACGATTGGCCAATGGGGTGACTGAAATTCTCCAAAAGGATGCTGCCAGCTGTATGACTGTCCATGATAAGTTCCTTGCGCTGGGCACTCACTTTGGGAAAGTTTTCCTTCTGGACATCCAAGGCAATGTGACTCAGAAGTTTGAAATTAGTCCAGTGAGGATCAACCAGATCAGCCTAGATGAGAGCGGAGAGCATGTTGGGATCTGCTCTGAGGACGGCAAGGTTCAAGTGTTTGGACTCTACACAAGGGAAGGCTTCCATGAGAACTTTGACTGTCCTGTCAAAGTGGTGGCGTTACACCCTCGGTTCAGCAGTTCAAACTACAAACAATTTGTCACTGGAGGCAACAAGCTTCTTCTGTATGAGAGGAACTGGCTGAACCGTTGGAAGACGTCCACTCTGCACGAAGGGGAGGGCACCATCAATAACGTCCAGTGGAGGGCCAATCTCATCGCCTGGGCCAACAATGTGGGGGTGAAAATCTATGACATCAGCACCAAACAACGAATCACCAACGTCTCACGGGATAACGTCAGCCTGCGGCCGGATATGTACCCATGCAGTCTGTGCTGGAAAGACAACTCCACCCTCATCATCGGCTGGGGCTCCTCCGTTAAGATCTGTGCCGTGAAGGAGAGGGACCACGCGGAGATGAGAGACCTTCCTAGCCGTTATGTGGAAATTGTGTCTGCGTTTGAAACCGAGTTCTTCATCAGTGGCCTGGCGCCTCTAGCAGACCAGCTGGTCAACCTGTACTTTGTGAAGGAAAACTCTGACCACGTGGAGGAGGAGTTTAGAGCGCGGCCTCGTCTGGACATCATCCAGCCTCTCCCAGAGGGCTTTGAGGAGCTCTCATCAGACGCCCTGACCGTCCGCAACTTCCAGGAGAACGAGTGTCGAGACTACCGGCTGGAACATTCTGAGGGAGAATCCCTTTTCTACATCATCAGCCCTAAAGACATTGTGGTGgccaaagagagagaccaggatgACCACATTGACTGGCTGCTGGACAAGAAGAAGTATGAGGAAGCTCTGATGGCTGCTGAGATCAGCTTCAAGAATGTTAAACGCCATGAAGTCCAGAAAATTGGGATGGCCTACATAAATCACCTGGTGGAGAAGGGTGACTACGACACCGCTGCCAGGAAGTGTCAGAAGGTGCTGGGGAAAAACATGGAACTCTGGGAGAATGAGGTGTACAGGTTTAAAACCATTGGGCAGTTGAAGGCCATCAGCCAATACTTGCCCAGAGGGGACCTGCGTCTCAGACCTGCCATATATGAGATGATCTTAAATGAGTTTCTAAAGACGGACTATGAGggcTTTGCCACGTTGATCCGCGAGTGGCCAGGAGAGCTCTACAATAACATGACCGTTGTTCAGGCAGTCGCCGACCACCTCAAGAAGGACCCCACGAACAGCACCCTGCTCACCACACTGGCTGAACTGTATACATATGACCAGCGGTATGACCGAGCCCTGGAGATCTACTTGAGACTGAGGCATAAAGATGTTTACCAGCTGATCCACAAACACAACCTCTTCTCCTCCATAGAAGACAAGATTGTGCTCCTCATGGACTTTGATAAAGAGAAAGCTGTCGACATGCTCCTGGATAATGAAGACAAAATATCGACCGAAAGAGTAGTGGAGGAACTCCGGGACAGACCTGAGCTGCTACACATTTACTTACACAAACTGTTCAAGAGGGACCACCACAAGGGTCAGCGGTACCATGAGAGACAAATTGGCCTGTATGCTGAGTATGATCGGCCCAACCTGCTGCCATTCCTCAGGGACAGCATCCACTGCCCACTAGAAAAGGCTCTGGAGATTTGTCAGGAGAGAAACTTTGTGGAGGAGACTGTCTTCCTGCTCAGCAGGATGGGGAACTGTAGACGGGCCCTTCAGATGATCATGGAGGAACTGGAGGATGTGGACAAGGCCATAGAGTTTGCTAAGGAGCAGGATGATGTTGAGCTGTGGGAGGATCTCATCTCCTATTCTATTGATAAGCCACCCTTCATTACTGGTCTCCTTAATAACATTGGGACACATGTGGATCCCATCTTGCTCATCCACCGCATAAAGGAGGGAATGGAGATTCCTAACCTCCGAGATTCTCTAGTCAAGATCCTACATGACTACAACCTGCAGATCTTGCTGCGGGAGGGCTGTAAGAAAATCTTAGTGGCTGACTCCCTCTCCCTGCTCCAAAAGATGCATAGGTCTCAGATGAGAGGAGTCCGAGTGGATGAAGGGAGCATCTGTGAATCCTGTCACACGTCAATATTACCATCAGATATGGCTCAGAACTTCAGTGTGGCTGTCTTCCACTGCAGACACATGTTCCACAAGGAGTGTTTACCTTCTCTTGGAACAATTCCTGGAGTCCAGTTTTGCAACATCTGCAGTGCAAAGCGGAGAGGACCAGGAAGTGGGATACTGGAGATGAAAAAGTGACAGGAAATGCTCACCTTATCATGCCATCGCTTCGTCTTTCACCAGTTGGGATGAATGGCAGTCTCTGGGTTGATAGATTTGATCTTTCTCCTTTGCTACGGTGTGATCTTCTGAATCAATgcataatatatcattatattaaCTGTtaccaaaataaaataataaatgttgcaCTATGACCTCTTGATACACTTCTTGCAATTTGCTTTGGAATCCAAATTCCAAATAAAAGGCTATTGAAATCTCAA

Function

symbol description
vps41 Predicted to enable metal ion binding activity. Predicted to be involved in several processes, including cellular response to starvation; endosomal vesicle fusion; and protein targeting to vacuole. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in Golgi apparatus; cytoplasmic vesicle; and lysosome. Predicted to be part of HOPS complex. Predicted to be active in late endosome. Orthologous to human VPS41 (VPS41 subunit of HOPS complex).

NR:

description
vacuolar protein sorting-associated protein 41 homolog

GO: NA

KEGG:

id description
K20184 VPS41; vacuolar protein sorting-associated protein 41

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562937.2 True 2999 mRNA 0.48 28 27936143 27951787
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110489920 LOC106590161 coding upstream 140756 27771617 ~ 27795387 (+)
fam49bb LOC106590167 coding upstream 372646 27524125 ~ 27563497 (+)
asap1b LOC106590164 coding upstream 416828 27452280 ~ 27519315 (+)
chpf2 LOC106590171 coding upstream 566817 27361803 ~ 27369326 (+)
LOC110489907 LOC106590173 coding upstream 585302 27332486 ~ 27350841 (+)
LOC110489924 LOC106590156 coding downstream 1526 27953313 ~ 27964057 (+)
lypla1 lypa1 coding downstream 97159 28048946 ~ 28051642 (+)
LOC110489930 LOC106590073 coding downstream 223698 28175485 ~ 28189640 (+)
LOC110489931 LOC106590150 coding downstream 248825 28200612 ~ 28204289 (+)
LOC110489932 LOC106590150 coding downstream 253930 28205717 ~ 28216245 (+)
G1276471 NA non-coding upstream 2825 27933082 ~ 27933318 (+)
G1276317 NA non-coding upstream 24866 27910903 ~ 27911277 (+)
G1276287 NA non-coding upstream 82603 27853132 ~ 27853540 (+)
G1276274 NA non-coding upstream 98955 27836253 ~ 27837188 (+)
G1276259 NA non-coding upstream 128074 27807859 ~ 27808069 (+)
G1276479 NA non-coding downstream 12671 27964458 ~ 27966280 (+)
G1276489 NA non-coding downstream 31219 27983006 ~ 27983363 (+)
G1276494 NA non-coding downstream 34845 27986632 ~ 27987021 (+)
G1276505 NA non-coding downstream 47522 27999309 ~ 27999555 (+)
G1276630 NA non-coding downstream 134538 28086325 ~ 28086580 (+)
G1276288 NA other upstream 82130 27853618 ~ 27854013 (+)
G1275572 NA other upstream 834116 27101309 ~ 27102027 (+)
kif9 kif9 other upstream 973917 26960749 ~ 26974049 (+)
G1274830 NA other upstream 1493756 26440011 ~ 26442387 (+)
G1274765 NA other upstream 1570997 26364278 ~ 26365146 (+)
G1276733 NA other downstream 238399 28190186 ~ 28256406 (+)
G1277159 NA other downstream 622529 28574316 ~ 28624218 (+)
G1277279 NA other downstream 863579 28815366 ~ 28815810 (+)
G1279349 NA other downstream 2351246 30303033 ~ 30303419 (+)
htr5ab htr5a other downstream 2444080 30395817 ~ 30416375 (+)

Expression

vps41(vps41) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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vps41(vps41) Expression in each Bioproject

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vps41(vps41) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network