lypla1 (lypa1)


Basic Information

Item Value
gene id lypla1
gene name lypa1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 28048946 ~ 28051642 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562943.2
ACAGACTTTTAGACCATCTGTATTTTCTACGAATTGAATGGATTAGTACATTGTCCTATCCACTGGGTTTACCAGTTAATGAATTCTTACTGCGCTCTCTCTTTGCCAAACTGATGCCCGCGAGTACGAAAACATACTGTTCCCGCAACTATCGCATGTAATAACAAGGGCGATACAAATTTAACGTTTTCGTTCCATCCAAGGATACATCGTCAATTCTCTTGGAGAATAACAGCTGCCTGTACGTTGTATGTGCGGTAATAGTATGTCAGTGCCCTTGCCTGCTATTGTACCTGCCGCTCGGAAAGCCACTGCAGCGGTGATATTTCTTCATGGCCTAGGTGACACTGGCCATGGCTGGGCAGAGGCCTTTGCTGGGATCCGGACACCACATGTGAAATACATCTGTCCTCACGCTCCAGTCAAGCCTGTTACATTAAACATGGGGATGTCCATGCCCTCCTGGTTTGACATCATCGGATTGCAAACAGATGCAGAGGAAGACGAAGCTGGTATTAAACAGGCTTCAGAGAATATTAAAGCACTGATAGATCAAGAAGTGAAGAATGGAATACCATCACACAGAATTGTTCTTGGTGGATTTTCTCAGGGTGGAGCGTTGTCTCTGTACACAGCTCTCACAACCCAACAGAAGCTGGGGGGAGTGGTGGCCCTCAGCTGCTGGCTCCCTCTACGGAACTCCTTCCCCCAGGCATCGAGAAACTCTGCCAACAATGAGATGCATGTCCTGCAGTGCCATGGCGAGGCGGACCCTCTGGTGCCCGTAATGTTTGGATGTCTCACTGTAGAGAAGCTAAAGACCCTATGCAATCCATCCAACATCATCTTTAAGACCTATCCCAGAATGCCACACAGTGCCTGCCCTGAGGAAATGATGGATATCAAGCAGTTTATTGAAAAGCAGCTTCCTCCAATCTAACAGTTAGACCCACACACCCACCACCATCAGAGCTCATCGAAGGTGACACCTGTGACGCTCCATAGACTGTCTGAACCACAGACCTCACTCAATAGAACCTGCTAACTCTGGctgtcagagacagagtccgagACAGGCCCTAGGGCTAGAGACAAGCTGGGGTGAGGGACATCATAACTAAAACTATTGTATTTTCTGCTGGAGCCAGGTGGAATCCTCAGTATTCGAATCGTTAATGTTGTCAGTTGCCAGTAGTGTAGCTGTTTGCTATTGGGATGCCATCTTTCCCAGGGAATACATGTGTTGGGAGTATCTTAGATTGTATGGTTTGAAAATATGATCCTTAATATGTTGATTTGTAATAAATAACTTAATGAATGTATAAAAGCCTGATATAATGCAAGAGTAAAATAAGAATATGGCATAAAAGTATTGTGCTTTAATAGATTTGTAAGAATTGGAAGCAATGTTCTGTCAATTCAATACACAAATACCATATA

Function

NR:

description
acyl-protein thioesterase 1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K06128 LYPLA1; lysophospholipase I

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562943.2 True 1440 mRNA 0.45 9 28048946 28051642

Neighbor

gene id symbol gene type direction distance location
LOC110489924 LOC106590156 coding upstream 84889 27953313 ~ 27964057 (+)
vps41 vps41 coding upstream 97159 27936143 ~ 27951787 (+)
LOC110489920 LOC106590161 coding upstream 253559 27771617 ~ 27795387 (+)
fam49bb LOC106590167 coding upstream 485449 27524125 ~ 27563497 (+)
asap1b LOC106590164 coding upstream 529631 27452280 ~ 27519315 (+)
LOC110489930 LOC106590073 coding downstream 123843 28175485 ~ 28189640 (+)
LOC110489931 LOC106590150 coding downstream 148970 28200612 ~ 28204289 (+)
LOC110489932 LOC106590150 coding downstream 154075 28205717 ~ 28216245 (+)
chmp5b LOC106590149 coding downstream 170936 28222578 ~ 28227687 (+)
myom1b LOC106590144 coding downstream 194876 28246518 ~ 28281728 (+)
G1276505 NA non-coding upstream 49391 27999309 ~ 27999555 (+)
G1276494 NA non-coding upstream 61925 27986632 ~ 27987021 (+)
G1276489 NA non-coding upstream 65583 27983006 ~ 27983363 (+)
G1276479 NA non-coding upstream 82666 27964458 ~ 27966280 (+)
G1276471 NA non-coding upstream 115628 27933082 ~ 27933318 (+)
G1276630 NA non-coding downstream 34683 28086325 ~ 28086580 (+)
G1276632 NA non-coding downstream 35405 28087047 ~ 28087286 (+)
G1276636 NA non-coding downstream 36775 28088417 ~ 28088685 (+)
G1276640 NA non-coding downstream 39788 28091430 ~ 28091756 (+)
G1276655 NA non-coding downstream 49844 28101486 ~ 28101693 (+)
G1276288 NA other upstream 194933 27853618 ~ 27854013 (+)
G1275572 NA other upstream 946919 27101309 ~ 27102027 (+)
kif9 kif9 other upstream 1086720 26960749 ~ 26974049 (+)
G1274830 NA other upstream 1606559 26440011 ~ 26442387 (+)
G1274765 NA other upstream 1683800 26364278 ~ 26365146 (+)
G1276733 NA other downstream 138544 28190186 ~ 28256406 (+)
G1277159 NA other downstream 522674 28574316 ~ 28624218 (+)
G1277279 NA other downstream 763724 28815366 ~ 28815810 (+)
G1279349 NA other downstream 2251391 30303033 ~ 30303419 (+)
htr5ab htr5a other downstream 2344225 30395817 ~ 30416375 (+)

Expression


Co-expression Network