LOC110489930 (LOC106590073)


Basic Information

Item Value
gene id LOC110489930
gene name LOC106590073
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 28175485 ~ 28189640 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562945.2
GCCACGGTGTTGTGCTTGTCTCTCTCATACTCCGCTCTACAAAGTTTGGCGAGCCATATCCTTCTACAATCAAACAGCAAAGATCTAACATCGTTTCGCTCAGCATAATTTCcatattttacagacacaaaaaaggAACAGAAGGAACTAATATCCAGAGGCCATAGGCATATGCTGGTAGCCCCATTATCTCCTTTTCTTTAGGTGGTCAAGCATAACCAAATATGGAAGGCACCCCGGTTGAAATTTTCAAAGAAGACAAGTGCCTCACGGCGCTCGTCGAAGACTGTTATATGAATGCTACTTCGCAGTCTGGATACCCAGAAGGTCACAATCTGACTTTTGACTCTGACTGGGAAGAGGATCCCATGTCCCCAATCATCCCCATCATCACAGCTGTGTACTCCGTGGTGTTCGTGGTGGGCCTGGTGGGCAACTGCCTCGTCATGTACGTTATCATCAGGTATACAAAGATGAAGACAGCCACCAACATTTACATCTTCAACCTGGCTCTGGCCGACGCCCTGGTCACCACGACGATGCCTTTCCAGAGTACTGACTACCTGTTGAACTCGTGGCCGTTTGGCGAGGTGGTGTGTAAGGTGTTCATCTCCATCGACTACTACAACATGTTTACCAGCATCTTCACCCTGACCATGATGAGTGTGGACCGCTATGTCGCCGTCTGCCACCCGGTCAAGGCCCTGGACTTCCGGACGCCGATCAAAGCCAAGATCATCAACATATGTATCTGGATGCTGTCCTCTGCAGCAGGGGTACCAGCACTGTTACTGGGTGGCACCCAGTCCAACAATGGAACCACGGAGTGTGCCTTGCAGTTCCCGGAACCGTACGTGTACTGGGACACCTTGATGaaggtctgtgtgtttgtgtttgccttCGTGGTGCCCGTGCTCATCATCACAGTGTGTTACACCCTCATGGTGCTGCGACTCAAGAGCGTGCGTCTCCTCTCGGGGTCCCGGGAAAAGGACCGGCAGCTGCGGCGCATCACCCGCCTGGTCATGGTGGTGGTCGTGGTGTTCGTAGTGTGCTGGACGCCCATCCACATCTTCATCCTGGTCAAGGCGCTGGTGAGCGTGCCCGAGACCACCGCCGTCATGGCCGCCTACTTCTTCTGCGTGGCGCTGGGCTACACCAACAGCAGCCTCAACCCCGTCCTCTATGCCTTCCTGGATGAGAACTTCAAGAGGTGCTTCAAGGACTTCTGCCTGCCAAAAAAGCTGAAGGGGGACAATGCCTCAGGGAAGAACAACAGGAGCACcgtgaggggaggaagggaggcccCACTTCCACTGGAGAACCCAGATGGGACTAGAAAGCCGGCATGACTAGCCATGGAGATGTCTTCCATTTCCCGCGTTGGAAAGGAAGACTCCAATGATCTGGGCCTAACCCAGGTGACATCAGGAATGTAAGCACACACAACAGTGCTAATTTAGATGACTGGTGTTCGTTCCATTTGTTTTACTGTTAGGCCCAAATCAATGGTCCGATTCCTCACACTTAGAAAAGGATATATCATTATTCTTTGATGTCAAATTTATTTGCACACAtcaagagggggaaaaaaacattccaCATGCCAACTATAGGACACACTTGAAAATGATAAGAACCTATATTATCTCAGTTTTACCGTGTTCCTTCATAGTTACTTGCTATGCTGACtctgcatctgcacagttctaaTTGGATTGCAAGATGCAACATCCTCCTTCTAGCCTCTGCCATTCAATTAAATAGTTATCCTTGACAAAACATCAATAATGATTGGGGAAGCGCTTTAAAGGGGCAACCTGGGATTGGCACATCCATCCATTTTTGCCATATCTGTCTCTACCAACCAATGTGTATGTGGTGCAGAGATCTATTACCTCCTTTGGGAATGAGGCACCCTTATGGGTGGCAGGTaggacaaggcagttaacgcactgttcctaggccgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggtaaaaaaaaaacattttaaaaaggcaTGATAACACAAAAACCTTAGTATTTTTCAAGTCAAAACatatttgatttgtcacatgcgccaaatacaacaggtgtaggtagaccttacagtgaaatgcttacgtacaagcccttaatcaacagagcagttttaagacaaaaaaaa

Function

NR:

description
delta-type opioid receptor-like

GO: NA

KEGG:

id description
K04214 OPRK1; kappa-type opioid receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562945.2 True 2192 mRNA 0.48 4 28175485 28189640

Neighbor

gene id symbol gene type direction distance location
lypla1 lypa1 coding upstream 123843 28048946 ~ 28051642 (+)
LOC110489924 LOC106590156 coding upstream 211428 27953313 ~ 27964057 (+)
vps41 vps41 coding upstream 223698 27936143 ~ 27951787 (+)
LOC110489920 LOC106590161 coding upstream 380098 27771617 ~ 27795387 (+)
fam49bb LOC106590167 coding upstream 611988 27524125 ~ 27563497 (+)
LOC110489931 LOC106590150 coding downstream 10972 28200612 ~ 28204289 (+)
LOC110489932 LOC106590150 coding downstream 16077 28205717 ~ 28216245 (+)
chmp5b LOC106590149 coding downstream 32938 28222578 ~ 28227687 (+)
myom1b LOC106590144 coding downstream 56878 28246518 ~ 28281728 (+)
LOC110489939 LOC106590143 coding downstream 92232 28281872 ~ 28316370 (+)
G1276658 NA non-coding upstream 71873 28103320 ~ 28103612 (+)
G1276655 NA non-coding upstream 73792 28101486 ~ 28101693 (+)
G1276640 NA non-coding upstream 83729 28091430 ~ 28091756 (+)
G1276636 NA non-coding upstream 86800 28088417 ~ 28088685 (+)
G1276632 NA non-coding upstream 88199 28087047 ~ 28087286 (+)
G1276682 NA non-coding downstream 44767 28234407 ~ 28236826 (+)
G1276771 NA non-coding downstream 89490 28279130 ~ 28279583 (+)
G1276776 NA non-coding downstream 129567 28319207 ~ 28319579 (+)
G1276777 NA non-coding downstream 130327 28319967 ~ 28320341 (+)
G1276778 NA non-coding downstream 130768 28320408 ~ 28320958 (+)
G1276288 NA other upstream 321472 27853618 ~ 27854013 (+)
G1275572 NA other upstream 1073458 27101309 ~ 27102027 (+)
kif9 kif9 other upstream 1213259 26960749 ~ 26974049 (+)
G1274830 NA other upstream 1733098 26440011 ~ 26442387 (+)
G1274765 NA other upstream 1810339 26364278 ~ 26365146 (+)
G1276733 NA other downstream 546 28190186 ~ 28256406 (+)
G1277159 NA other downstream 384676 28574316 ~ 28624218 (+)
G1277279 NA other downstream 625726 28815366 ~ 28815810 (+)
G1279349 NA other downstream 2113393 30303033 ~ 30303419 (+)
htr5ab htr5a other downstream 2206227 30395817 ~ 30416375 (+)

Expression


Co-expression Network