LOC110489931 (LOC106590150)


Basic Information

Item Value
gene id LOC110489931
gene name LOC106590150
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 28200612 ~ 28204289 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944221.1
TTCTGAGGAAACGAAACTTATTAGTCGCGGTGTTTGTCCGTGTGAAAGTGAGCAACAACCGTCCAGATGGCTCAACAGGGAATTCTGCTGGACCAGGAccagttctgttgttctgtctgtctggatctacTGAAGGAGCCAGTCACTATTCCCTGTGGACACAGTTACTGTAGGAGCTGTATTGAGGGCTGCTGGGATCAGGATGATCTGAAGGGGATCTACAGCTGTCCTCAGTGCAGACAGACCTTCACTCCAAGGCCTGCTCTGATAAAAAATATCATATTGACTGAAGTGGTGGAGAAACTGAAGAAGACAGGACTTCAGGCTGATCCCCCTGATCCGTGCTAtgctggacctggagatgtggCGTGTGATTTCTGCAATGGgaccagaaagcagaaagccctcatgtcctgtctggtgtgtctggtgtCTTCCTGCAAGACTCACCTCCAGCCTCACTATAGTGTCCCAGGACTCAAGAAGCACAAGCTGGTCAAAGCCTCCACACAGCTACAGGAGAACATCTGCTCCCGTCATGACGAACTGCTGAAGATTTACTGTCGTACCGATCAGAATTGTATCTGTTATCTGTGTATGGTGGATGATCATAAAGGCCATGATACAGTGtcagctgcagcagagaggaccGAGAAACAGAGTCAGCTGGTGATGAGTCAGCAGAAGCTACAGCAGAgaatccaggagagagagaaggagctgaaGGAGCTCCAACAGGCTGTGGAGTCTCTCAAGCACTCTGCACAGGCagcagtggaggacagtgatcGGATCTTTACTGAGCTGATCCACTCCATTGAGAGAAGGTGCTCTGAGGTGAAGGAGTTGATCAGAGACCAGGAGAAGGCTCAAGTGAGTCAAGCTGATGGACTCTTGGAGCAACTGGAGCAGCAGATCGCTGAGCTGAGGAGGAGAAACGctgagctggagcagctctcTCACACAGAGGATCACATCCATTTCCTCCAGagTTATCAGTCCCTCTCCAGTCCCAGTGTCTCTTCAGACTTACCCAGCATCGTTATCCATCCTCAGTACTTTGTAGATGTCAATAAGACTGTTTCTGATGTCAGAGAGAGACTAGAAGGCGTCCTTAAAGGAGAATGGACCAAGATCTCCACCACAGTAAATTCTGTGGATATCTTACTGCCTCCAGAGCCCAAGACTAGAGAACGTTTCTTACAATattcctgtcagctcacactggacccaaacacagcacagaaatccctctctctgtctgagggaaACAGAAAGGTGACAGTTGTTAAGGCTGTTAACGATCCGAATCctgaccatccagacagattCACTGGTTGGTGGCAGGTCCTTtgtagagagggtctgtctggacgctgttactgggaggtggagTTTCATCATGGGACTGTTTTTATAGCAGTCTCATATAAAGACATAAGTAGAGTAGGGAAGGTTAATGGCTCTAGATTTGGATACAATGACAAGTCTTGGGGTTTAGAGTTATCTGGTAATGGTTATAGTTTCAGACACAATAATGTTGAGACTAAAGTATCAGGCCCTCAGTcctccagagtaggagtgtacctgGATCACAAGGTAGGTATTCTGTCCTTCTACAGCATCTCTGACACAATGACCCTCCTCCACAGAGTCGAAACCACGTTCACTAAACCCCTCTATCCTGGGTTATGTGTTTGGTACAAAAATGATTCTGCTGAGCTGTGTAAACTGTAGAGTTCCCCATATTAGAGGGATGGTTAATGCTCTTATAGTCTGGTATGTAGAATAATTGTTCTGAGTGATATCATCTTAATTGTAGTGTATGTTTCAATCTTATACATTCACATTGATGTATTATCACTTTGATGTACATTCTGAATAACAACCGCTGTATTGTATCTTGTTC

Function

NR:

description
PREDICTED: tripartite motif-containing protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944221.1 True 1909 mRNA 0.47 6 28200612 28204289

Neighbor

gene id symbol gene type direction distance location
LOC110489930 LOC106590073 coding upstream 10972 28175485 ~ 28189640 (+)
lypla1 lypa1 coding upstream 148970 28048946 ~ 28051642 (+)
LOC110489924 LOC106590156 coding upstream 236555 27953313 ~ 27964057 (+)
vps41 vps41 coding upstream 248825 27936143 ~ 27951787 (+)
LOC110489920 LOC106590161 coding upstream 405225 27771617 ~ 27795387 (+)
LOC110489932 LOC106590150 coding downstream 1428 28205717 ~ 28216245 (+)
chmp5b LOC106590149 coding downstream 18289 28222578 ~ 28227687 (+)
myom1b LOC106590144 coding downstream 42229 28246518 ~ 28281728 (+)
LOC110489939 LOC106590143 coding downstream 77583 28281872 ~ 28316370 (+)
mettl4 mettl4 coding downstream 173515 28377804 ~ 28389529 (+)
G1276658 NA non-coding upstream 97000 28103320 ~ 28103612 (+)
G1276655 NA non-coding upstream 98919 28101486 ~ 28101693 (+)
G1276640 NA non-coding upstream 108856 28091430 ~ 28091756 (+)
G1276636 NA non-coding upstream 111927 28088417 ~ 28088685 (+)
G1276632 NA non-coding upstream 113326 28087047 ~ 28087286 (+)
G1276682 NA non-coding downstream 30118 28234407 ~ 28236826 (+)
G1276771 NA non-coding downstream 74841 28279130 ~ 28279583 (+)
G1276776 NA non-coding downstream 114918 28319207 ~ 28319579 (+)
G1276777 NA non-coding downstream 115678 28319967 ~ 28320341 (+)
G1276778 NA non-coding downstream 116119 28320408 ~ 28320958 (+)
G1276288 NA other upstream 346599 27853618 ~ 27854013 (+)
G1275572 NA other upstream 1098585 27101309 ~ 27102027 (+)
kif9 kif9 other upstream 1238386 26960749 ~ 26974049 (+)
G1274830 NA other upstream 1758225 26440011 ~ 26442387 (+)
G1274765 NA other upstream 1835466 26364278 ~ 26365146 (+)
G1277159 NA other downstream 370027 28574316 ~ 28624218 (+)
G1277279 NA other downstream 611077 28815366 ~ 28815810 (+)
G1279349 NA other downstream 2098744 30303033 ~ 30303419 (+)
htr5ab htr5a other downstream 2191578 30395817 ~ 30416375 (+)
G1279833 NA other downstream 2739882 30944171 ~ 30947330 (+)

Expression


Co-expression Network