LOC110489944 (LOC106590138)


Basic Information

Item Value
gene id LOC110489944
gene name LOC106590138
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 28580623 ~ 28612037 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944234.1
AATCCCTTTAAAGCCACACACACGGCATACAGACGCATTTTTGGTTCCCAAAATTACTTCAACCTTTCAAGGTTttgtttatagattttttttttgttgctatagTCACTTGTGTCTGTGATGATCGTCTAACGATCTCGACACCGGTCTGCAGGATTGATATCTCCAACTGCGGCGTCATTTACTGGAATCGCGTCGGCCATGTTGTAGTGGGGGTTGATGCAAGTTTAGAGGTAGGAAGTGTAGCTACAGGAACTGGGTTAGCCTACTTTTGGGGACTTATTTTGTCATGTCGCTGGATACATTTAGCTGGGGTTTTATTCATTAAGGCGTTCTGTCTGTGTCAACCCCTCTAATCGTTTAATTTCTTCATCCTTCGTTTTGCTTTGATTTAACTTCATTGTTATTTCATTCACCGAGCACAAAAACGATTGAGAAAGACCTGTGTTGGAGGGAGGCGGGATGGGGGCGACTGTGATTTCCATGTTGGAATACTAGCTGATTTTTCGTCGAACCCAGAAATAAATTGGAAATACAAACAAGCGACACAACAGCGTGAATTTCTTAAAAGACTTGACCATGGGCTGCATCAAGAGTAAAGAGGACAAGGGGCCTACCATGAAGTACCGCCCGGATAACGCTCCGGTCTCAGATGTCATCGGCCCCCACGTGGGCCACTATGGGCCCGACCCCACCCAGCTGCAGCAGAACCAATCGTCCTCCACGGGGCCCGCTGCAGGTTTCAATCCCCACGCCATCACCCCCTTCGGAGGAGCTTCCTCCATCATGACCCCCTTCGGAGGGGCTTCCACCTCCTTCTCCGGCGCTCTACCCGGCACGTTCCCCGGTGCCGTCTCAGGTGGGGTTACGTTCTTTGTGGCCTTGTACGACTATGAAGCCAGAACCTCAGACGACCTGTCGTTCAAAAAAGGGGACCGCTTCCAGATCATCAACAACACAGAAGGGGACTGGTGGGAGGCGCGCTCCATCAACACAGGGAAGAAGGGTTACATCCCCAGTAACTATGTGGCACCAGCTGACTCGATCCAGGCTGAAGAGTGGTACTTTGGTAAAATGGGACGTAAAGATGCTGAGAGGCTGCTGTTGAATCAAGGCAACAACCGAGGCACCTTCCTTGTGCGAGAGAGTGAAACTACTAAAGGTGCTTACTCCCTGTCCATACGAGACTGGGACGATGCCAAAGGCGACAATGTGAAACACTACAAGATCCGCAAACTTGACAACGGGGGTTACTACATCACCACGCGCGCCCAGTTTGACACGCTGCAGAAACTGGTCAAACACTACACAGAGCATGCAGACGGTCTGTGCTACCGGCTGACCACGGTGTGCCCCACGGTGAAGCCCCAGACCCAGGGACTGGCCAAGGATGCCTGGGAGATCCCCCGGGAGTCCCTACGCCTGGAGCTCAAACTGGGCCAGGGATGCTTCGGAGAGGTCTGGATGGGCACGTGGAACGGCACCACCAAGGTGGCCATTAAGACCCTGAAGCCAGGCACCATGTCCCCCGAGGCCTTCCTCCAGGAGGCCCAGATCATGAAGAAGCTGAGACACGACAAGTTGGTGCCCCTCTACGCCGTGGTGTCTGAGGAACCCATCTACATCGTCACTGAGTACATGgccaaagGAAGTTTGCTGGACTTCCTAAAGGAGGGAGACGGTAAATTCCTCAAGCTTCCCTTGCTGGTGGATATGGCAGCACAGATCGCTGACGGTATGGCTTTCATCGAGAGGATGAACTACATCCACAGGGACCTGCGCGCCGCTAACATCCTGGTCGGGGACAACCTGGTGTGCAAGATCGCCGACTTCGGTCTGGCTAGGCTGATCGAGGACAACGAGTACACTGCTAGGCAAGGTGCCAAGTTCCCCATCAAGTGGACGGCTCCTGAGGCTGCCCTGTACGGCCGCTTCACCATCAAGTCAGACGGCTGGTCCTTCGGCATCTTACTCACTGAACTGGTCACCAAGGGCAGGGTGCCCTACCCAGGCATGGTGAACAGGGAGGTCCTGGAGCAGGTGGAGCGGGGGTACCGTATGCCCTGCCCCCAGGGCTGCCCAGAGTCCCTCCACGAGATGATGAAGCTGTGCTGGAAGAAGGACCCTGACGAGAGGCCCACCTTCGAGTACATCCAGTCCTTCCTGGAGGACTACTTCACAGCCACGGAGCCACAATACCAGCCTGGGGATAACCTATAGTCAGGCCTGGCCGCAGCGCAGCCCTGGACCACTTCACCGTGCAATGTATCTCTCCACCCAGGAGGAGCAGACTTGGATACAGACGCATGGAGATGTAATTCTATGAATAATGTGCTTCAGAAAAGCCAACTGGAAGCTTGGTTATCAAGTTGCACAAAACCACTGCTATCGCTGATGATTTTTTAAaaaagtactttttttttttttttttacgttctgtttatttttaatttcaggTACTACATATAGTCTTAGTTTGTATGAATttactattttattttgtatCCTTTATTTTGTCCTCAATGATCATGTTCATTTTCAAAGTGACCAATCATTCAACTGTGTAGTTGTTTTAACAAATTTGTTGAACCATGAAAATGGCACGAAAGCCCATCAGGTAGAGGCTCTCAGAATGATAGCTCTTTGAAAtggaggacaagagagaaggATGTACTgtaaggctgcgtttacacataggcagcccaattctgctcatttttccactaattggtcttttgaccaatcgattCAGatctttttaaatatttttcagagctgatctgattgggtAAAAAATCAATTAGTGAAAATAAGATTAgagttgggctgcctgtgtaaactcgAAGGCAAGTACTGTGGGAATATTTCAAATGAGAATTCAGTTCTGTGTTCAACTGGAAAATGCTTTTCTTTCTACATGTTTTTCTGAATGATCGACTTGAGTGGCACGGATCAGGGACAGTTGCTTGGGTCCGTCTTGTCTGCtcattttctattttatttctATTAGTTGATTTTATTCTATATAAACTAAGAATTATTAATATCATGGAAATGGTTCTAGGTTCATGTGAAGCCCTCAAGTCCTTCATTAACATACAGGACATTTCTACAACACTAAGTCCATCCTGTTATGTGTCCAAGACAAACTGTTGCCATGCCAAGTTATATTACCTCTTTAAAGATCACTACAGCATATGACTAAACCTTGTTTCCCTTGTACTCTGATCTGGAgacagtttagcattttccctaCAAATTCTTTAGGTGAGGATTACAGGagtggaagctgatcctagatctctATCTAAGGGAAACTTTACCCCGGAGCAATGTATCACTGTGAGATAGGAGAATATTCAGCTCTCACCTGGCAATGCCGACAGCCCTGTAGATCACTAAGCTACATGCCATTGCAGATTGTCTCTGCACATGTCATAGCACTACGCAACAGGAGGCAATATTGAATGGAGCTAGTATAGACTAAATGTGTTCTAGGACCAGAATTAGAATTTATGGATGCAACCACCTGATTTGGCAGTTACATGCCAGCAATAACTTGTACACAATTATGTTAAAAAGGACTTGGCCTTTTCTTTCACTTACATGGTTAAGTCATTTACTAGACTCATCACATGTTCCATTTTCAGACCTAAAGATGCTCGAAAAGGAAACCATTTCACCTTTATGGGAAAATATTGCCAAAGCACCTGAACACTGTTTTATTTTGACTACATGTGATTTTATAGTGTGAACGGATTTCATTCAGTCAACAGTTTCAGCCTAGATACAAAGAGGATAcgtttttattcagacatttttgtttttaaaggtagactcagcgaaatgacgttgccacgagcagcaccgcagatattgCGACGAGCGAGATGCAAGCCTTTGCTCCCTTAGTCACAGACGGTGCTTGCGCAAGGGTTCCCTTCACGCTGTAAGAGCGTGGAAGGTACGGGACCAAAACAGTGGGGGAGTTTAGCCTCGCGCTTCAAAGCTCTTAGTAGTTGCGGAatttgacccactatgctgtttattTTGTGCACCTACATATCGCCGAGTCTACCTTTAATACATTAGTCAGAACCAGTGAACGGTTAGTCATATTTTAAGACCGCAAAATGGAGGAAGGTCATTTTAATACGTCATGTCGCATCCACAGGGGTCATTTGACTCTTTTCTTTAAACTCATCAGTTAAGTGTTACATTTGATTATGCATACTTACACAGATGGGCAGAACATAGATTGGTCAACTGGGGTTTTAAAGAAGGGCTTTGTACAAAATCCTGATTTTATAAAAAGGACAGCAAAGACGTTGGGTGAAAGATAAATAATTATGGTTTAGATACTAATCTGTGGAATTTGTACAGttggaaaataaaacatttctgaTTCTAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG:

id description
K05705 YES1; tyrosine-protein kinase Yes

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944234.1 True 4411 mRNA 0.46 12 28580623 28612037

Neighbor

gene id symbol gene type direction distance location
mettl4 mettl4 coding upstream 191094 28377804 ~ 28389529 (+)
LOC110489939 LOC106590143 coding upstream 264253 28281872 ~ 28316370 (+)
myom1b LOC106590144 coding upstream 298895 28246518 ~ 28281728 (+)
chmp5b LOC106590149 coding upstream 352936 28222578 ~ 28227687 (+)
LOC110489932 LOC106590150 coding upstream 364378 28205717 ~ 28216245 (+)
LOC100136716 LOC106590136 coding downstream 25710 28637747 ~ 28698956 (+)
LOC110490831 LOC106590071 coding downstream 119039 28731076 ~ 28741476 (+)
LOC110489948 mrc1 coding downstream 144751 28756788 ~ 28777089 (+)
LOC110489949 mrc1 coding downstream 183043 28795080 ~ 28812062 (+)
LOC110489950 LOC106590132 coding downstream 214543 28826580 ~ 28837296 (+)
G1277145 NA non-coding upstream 35638 28544680 ~ 28544985 (+)
G1277144 NA non-coding upstream 36001 28544338 ~ 28544622 (+)
G1277136 NA non-coding upstream 44081 28536278 ~ 28536542 (+)
G1277000 NA non-coding upstream 143659 28436747 ~ 28436964 (+)
G1276996 NA non-coding upstream 145424 28434939 ~ 28435199 (+)
G1277128 NA non-coding downstream 2365 28614402 ~ 28616681 (+)
G1277174 clul1 non-coding downstream 7932 28619969 ~ 28620709 (+)
G1277177 NA non-coding downstream 13468 28625505 ~ 28626332 (+)
G1277178 clul1 non-coding downstream 14550 28626587 ~ 28631165 (+)
G1277186 NA non-coding downstream 89166 28701203 ~ 28703108 (+)
G1276733 NA other upstream 324217 28190186 ~ 28256406 (+)
G1276288 NA other upstream 726610 27853618 ~ 27854013 (+)
G1275572 NA other upstream 1478596 27101309 ~ 27102027 (+)
kif9 kif9 other upstream 1618397 26960749 ~ 26974049 (+)
G1274830 NA other upstream 2138236 26440011 ~ 26442387 (+)
G1277279 NA other downstream 203329 28815366 ~ 28815810 (+)
G1279349 NA other downstream 1690996 30303033 ~ 30303419 (+)
htr5ab htr5a other downstream 1783830 30395817 ~ 30416375 (+)
G1279833 NA other downstream 2332134 30944171 ~ 30947330 (+)
G1281462 NA other downstream 3384130 31996167 ~ 31996513 (+)

Expression


Co-expression Network