Gene
RNA
| Item | Value |
|---|---|
| gene id | tyms |
| gene name | tyms |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048579.1 |
| NCBI id | CM023233.2 |
| chromosome length | 81569517 |
| location | 28616467 ~ 28619751 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| tyms | Enables thymidylate synthase activity. Acts upstream of or within dTMP biosynthetic process and retina development in camera-type eye. Predicted to be active in cytosol and mitochondrion. Is expressed in several structures, including anterior neural tube; blood; nervous system; optic vesicle; and ventral mesoderm. Human ortholog(s) of this gene implicated in gastrointestinal system cancer (multiple); hematologic cancer (multiple); and rheumatoid arthritis. Orthologous to human TYMS (thymidylate synthetase). |
| description |
|---|
| thymidylate synthase |
| id | name | namespace |
|---|---|---|
| GO:0006231 | dTMP biosynthetic process | biological_process |
| GO:0006235 | dTTP biosynthetic process | biological_process |
| GO:0060041 | retina development in camera-type eye | biological_process |
| GO:0032259 | methylation | biological_process |
| GO:0004799 | thymidylate synthase activity | molecular_function |
| id | description |
|---|---|
| K00560 | thyA, TYMS; thymidylate synthase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021562975.2 | True | 1153 | mRNA | 0.48 | 7 | 28616467 | 28619751 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| adcyap1a | paca | coding | downstream | 50926 | 28559194 ~ 28565541 (-) |
| smchd1 | smchd1 | coding | downstream | 238991 | 28337647 ~ 28377476 (-) |
| emilin2b | LOC106590142 | coding | downstream | 280646 | 28316887 ~ 28335821 (-) |
| trnal-uag-3 | NA | coding | downstream | 307656 | 28308734 ~ 28308811 (-) |
| myl12.1 | LOC106590146 | coding | downstream | 379585 | 28232133 ~ 28236882 (-) |
| LOC110489945 | clul1 | coding | upstream | 87 | 28619838 ~ 28632520 (-) |
| LOC110489947 | LOC106590135 | coding | upstream | 81426 | 28701177 ~ 28724125 (-) |
| LOC118938886 | prex2 | coding | upstream | 198088 | 28817839 ~ 28818590 (-) |
| nsun6 | nsun6 | coding | upstream | 347680 | 28967431 ~ 28976959 (-) |
| LOC118938887 | LOC106590130 | coding | upstream | 358850 | 28978601 ~ 28982268 (-) |
| G1277425 | NA | non-coding | downstream | 80299 | 28535873 ~ 28536168 (-) |
| G1277419 | NA | non-coding | downstream | 86578 | 28529675 ~ 28529889 (-) |
| G1277101 | NA | non-coding | downstream | 110035 | 28506222 ~ 28506432 (-) |
| G1277012 | NA | non-coding | downstream | 168667 | 28447593 ~ 28447800 (-) |
| G1276950 | NA | non-coding | downstream | 219818 | 28396253 ~ 28396649 (-) |
| G1277467 | NA | non-coding | upstream | 3940 | 28623691 ~ 28717648 (-) |
| G1277539 | NA | non-coding | upstream | 110609 | 28730360 ~ 28730687 (-) |
| G1277552 | NA | non-coding | upstream | 124164 | 28743915 ~ 28744248 (-) |
| G1277553 | NA | non-coding | upstream | 126015 | 28745766 ~ 28746478 (-) |
| G1277478 | NA | non-coding | upstream | 130940 | 28750691 ~ 28751365 (-) |
| G1276905 | NA | other | downstream | 350712 | 28261540 ~ 28265755 (-) |
| G1276639 | NA | other | downstream | 525626 | 28090494 ~ 28090841 (-) |
| G1276566 | NA | other | downstream | 657033 | 27959052 ~ 27959434 (-) |
| LOC110489905 | LOC106590176 | other | downstream | 1384988 | 27228878 ~ 27231497 (-) |
| G1278860 | NA | other | upstream | 1011274 | 29631025 ~ 29631768 (-) |
| dlgap1b | LOC106590111 | other | upstream | 1359424 | 29979175 ~ 30253803 (-) |
| G1281361 | NA | other | upstream | 3244483 | 31864234 ~ 31864636 (-) |
| G1281363 | NA | other | upstream | 3245538 | 31865289 ~ 31866137 (-) |
