LOC100136716 (LOC106590136)


Basic Information

Item Value
gene id LOC100136716
gene name LOC106590136
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 28637747 ~ 28698956 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562976.2
CCAGAGTTCGCGCTGAAAGGCATCCTCACCTTTTCCCCTTTAAGGAGTGCGAGGAGTGGGGGGGAATCGGACAGATGTAGAACACACGTGGTTTGCTGCTAGAACGGGGCTCCAGACGCGGGACTTCCTTTGGCTTTGACATTTTTGTGGGTTTGTGATTGTGGCAGGCGCAGCGTACTGGAAAGAAGACATCAACAACCTAACACTATTGCCACGGGTGCATTTTACAGAGCTACACAAAATATTACGAATACGTGAACTTTTAAATTTCTCTCCAACGCAAGCTACATATTTTATTCAACTATGTATGCAAATAACGGAACGATGACATTCTAACGGGATGTTCGGGATGAACAAATAGCCTAACGGAGCGGTTCGTGCGCAATCATTACATTTTGCAGTTGGGGGAGCTGAACTTTTTGTGTACACGTTTAGTTTTCTGTTCTCAAAGCAACTGATTCAACTCTGCCCGGTTGGACGGAACTTTGAGATGCGCTAAAAGTGACATAGAGACTCTCATCTCTTCTACACTCCTAACAGATTTATATAACGCCATGAAAGACGATTTTGCAGACGAGGAGGAAGTACAGTCTTTTGGATACAAGAGGTTCGGGATCCAGGAGGGGACCCAGTGCACTAAGTGTAAGAATGAGTGGGCGTTAAAGACCTCCATAGCACTACTCTACGTGCTGTGCACTCTACTCACCATCGCTGTGGCTGTCCTCGGGTATAAAGtcGTGCAAAAGGTTGACAATGTGTCCGAAGGTATCGAGAGCTATGGGGGGAAGATCATTGCTGTGGAAACAGACTTGAAAAAGCTAGATGACCAGACTGGGGAGAAGTCAGAGAACACTACCACAGAGATCCAGGCCTTTAAGAACAACATCCGGGCTCTGCAGCGGCAGCTGTCTGAGGTGGCAGAGAGGAGCAGCAGTAACCGGGCGGCCCTGGGTCGTCTGCAGGATTCTGGCCTGGACATGCAGGGCAGCCAGGGCTCCATACAGGGTCTGCTGGAGGCCAACACGGCCACGCTGAGGTCGGTCAATGGCACCCTGCGGGCCTACGGTGGCACCATGGAGGGTCTTCAGGAGGACACGGCTCGGCTGCAAACTGAGCTCCAGGAGCAGGTTCGGCAGCAGAGCCAGGCCCTGCTGAGCATCGGGAATCTTAACCTCACCCAGGCCCAACAGAGGGGCCTGATCTCGGCTTTGCAGAGATCTGTGGACGACACCAGCCAGGCCATCCAGAAGATCCGAAACGACTTCCAGAGCCTGGAGCAGACGGCCAGGCAGACGAAGTCGGACGCTGATTGGCTGAAGGAGAAGGTGCAGAACCTCCAGGTGCTGGCCTCCAACGCCTCTGCCCTGGCCAAGTCCAACAACGACAGCCTGGAGGACGTGGGATCTCAGCTTGCCTCGCTGTCTGGACAGCTCCAGAACACCTCCAGCCTGGCAGAGAACCACGACCAGACTCTTAGGGAGATCATGGACCAGCAGCGCGACCACGACAACCTCACCTCCTCTAAGTTCGACCAGCTGGAGATACGCCTGGACGAGTCAGAGGGGAGCATCGACCGTGTGACAGGCAACATCAGCTTTACTACCCAACTCCTGGGCGCCATCAACCTGAACCTCAACGAGCTGCGCACCTGCGCTGAGACAGTGGGGCGCCACTCCGACTACCTGTCCGACTTGAATGCCACTGTGTCGGACGTGAGGTCGGACGCCACCACACTGAGGTCGCAGCAGGACGACCTGGTGGCCCGCCTGGACAAGGAGGTCACCAGCCTCTCCATCATCATGGAGGAGATGAAGCTGGTAGACAGCAAACACTCACAGCTCATCACCAACTTCACCATCCTACAGgGTCCACCTGGTCCAAGAGGCCCGCGTGGAGACAAAGGACCCCAGGGAGGAGCCGGTCAGCCCGGTCAGAAAGGGGAGAAAGGGGATACGGGTGGGCCTGGGGTGCAGGGGCTACGTGGAGAGAAGGGATTTCCAGGACCACCAGGAATACAAGGGTTCAAAGGTCAGCCAGGCTCACGGGGGAACCCAGGTTCAAAGGGCTCCCGAGGGTCAGGGGGCAGGGCAGGACCCCCGGGGGCGAATGGTGAGCCAGGCACTGCTGGGCTCCCTGGGAGAGATGGACAGGCCGGTCCTCAGGGGCCACAAGGTCCGTCGGGAGACCGAGGACAGGTGGGGCCGGCTGGGGCACAGGGACCCAGGGGACCAGTGGGGCCCATAGGGGCCCCAGGGCCACCTGGACTGCCAGGACTCACTGCCCgatctgcagcagcagcagcggtgcCTTTGGTCCCTTTCTCGATGCAGAGTGAGGCCCCCGCTCCTACTGTGTCGGCCCCAGGTTGTCCTCAAGAGTGGGTTGGCTTCAGAGACAAATGCTATCACTTCTCCAAAGAGCTGCACAACTTTGACGATGCAAAGAAAAGCTGTGATGCCCAGACTGCGTCAATGGTGATCATTAACGATAACGATGAACAGAAATGGCTGCAAAAGCAGACCTCTGGAAAGGGCTACTTCTGGATGGGTCTgacagacagggaggaggagaatgCATGGCGCTGGCTGGATGGAACCGAACCTGCCTTCTCGCAGTGGAAGCCAGGACAGCCAGACAACTGGAGCCATGGGcacgagagaggagaggactgcgCTGGCCTCATCCACGAGGGATTGTGGAATGATTTCTTCTGTGAAGATCTCATCAGCTACATCTGCGAGAAAGCCATCGAGTATCCCAAAAACTCCAGGATTATAGCACCCGCTGTGgaaggagaagaaacagaggaggcATGGTTGAGTCAGAGGCGGTATGATGAGCATCATTAGGCCCCGCCCACAAGTGACACTAGCCATCTGACACCCTATGCATGGACATGCTATGTGGAGAGATACGAGGGACAAGCTTCACAAGCCTGAATCGAGACTGTGGCTGCATTCACTGAGATTTCCCCCACTGATAGCCAGATTCAGCTCTCCTCCAAAGTGAATCCAGACCACTACTTCCAGAATTTGCATTCCAGCAACATGACAATCAAGTGTTGAGGGGAAGATCAAtcgtttttttaaatttttttaataATCACCAAAGTAATTGACTCATATAGATTTGTCTCATTTAATTGTTTTTAAATGCTGTTTTTTGTGTGACGTTAAGTCCATTTATAACTGATTATCTGAATGTATATTTTCATATTGCGGTTTTTCAATGTAGACCATTATTTTACGGCGCCAATGGGACTCACCACAGTGTCTTTCACAGTTGATCGTCTAGTTCCTCCATAATTATGTGAGGTGCAAAATGATGCGCAAAATAAACCAAAGAAATGTCGCCGATATGTCCCTTCTCAAACATCAAGAACTGTCTAGCTATATATAAGTATGTTATTATACACATTCATCTAAATAAATGAAGTATTTACACATAATAA
>XM_036944235.1
ATGCCCACAGACGATTTTGCAGACGAGGAGGAAGTACAGTCTTTTGGATACAAGAGGTTCGGGATCCAGGAGGGGACCCAGTGCACTAAGTGTAAGAATGAGTGGGCGTTAAAGACCTCCATAGCACTACTCTACGTGCTGTGCACTCTACTCACCATCGCTGTGGCTGTCCTCGGGTATAAAGtcGTGCAAAAGGTTGACAATGTGTCCGAAGGTATCGAGAGCTATGGGGGGAAGATCATTGCTGTGGAAACAGACTTGAAAAAGCTAGATGACCAGACTGGGGAGAAGTCAGAGAACACTACCACAGAGATCCAGGCCTTTAAGAACAACATCCGGGCTCTGCAGCGGCAGCTGTCTGAGGTGGCAGAGAGGAGCAGCAGTAACCGGGCGGCCCTGGGTCGTCTGCAGGATTCTGGCCTGGACATGCAGGGCAGCCAGGGCTCCATACAGGGTCTGCTGGAGGCCAACACGGCCACGCTGAGGTCGGTCAATGGCACCCTGCGGGCCTACGGTGGCACCATGGAGGGTCTTCAGGAGGACACGGCTCGGCTGCAAACTGAGCTCCAGGAGCAGGTTCGGCAGCAGAGCCAGGCCCTGCTGAGCATCGGGAATCTTAACCTCACCCAGGCCCAACAGAGGGGCCTGATCTCGGCTTTGCAGAGATCTGTGGACGACACCAGCCAGGCCATCCAGAAGATCCGAAACGACTTCCAGAGCCTGGAGCAGACGGCCAGGCAGACGAAGTCGGACGCTGATTGGCTGAAGGAGAAGGTGCAGAACCTCCAGGTGCTGGCCTCCAACGCCTCTGCCCTGGCCAAGTCCAACAACGACAGCCTGGAGGACGTGGGATCTCAGCTTGCCTCGCTGTCTGGACAGCTCCAGAACACCTCCAGCCTGGCAGAGAACCACGACCAGACTCTTAGGGAGATCATGGACCAGCAGCGCGACCACGACAACCTCACCTCCTCTAAGTTCGACCAGCTGGAGATACGCCTGGACGAGTCAGAGGGGAGCATCGACCGTGTGACAGGCAACATCAGCTTTACTACCCAACTCCTGGGCGCCATCAACCTGAACCTCAACGAGCTGCGCACCTGCGCTGAGACAGTGGGGCGCCACTCCGACTACCTGTCCGACTTGAATGCCACTGTGTCGGACGTGAGGTCGGACGCCACCACACTGAGGTCGCAGCAGGACGACCTGGTGGCCCGCCTGGACAAGGAGGTCACCAGCCTCTCCATCATCATGGAGGAGATGAAGCTGGTAGACAGCAAACACTCACAGCTCATCACCAACTTCACCATCCTACAGgGTCCACCTGGTCCAAGAGGCCCGCGTGGAGACAAAGGACCCCAGGGAGGAGCCGGTCAGCCCGGTCAGAAAGGGGAGAAAGGGGATACGGGTGGGCCTGGGGTGCAGGGGCTACGTGGAGAGAAGGGATTTCCAGGACCACCAGGAATACAAGGGTTCAAAGGTCAGCCAGGCTCACGGGGGAACCCAGGTTCAAAGGGCTCCCGAGGGTCAGGGGGCAGGGCAGGACCCCCGGGGGCGAATGGTGAGCCAGGCACTGCTGGGCTCCCTGGGAGAGATGGACAGGCCGGTCCTCAGGGGCCACAAGGTCCGTCGGGAGACCGAGGACAGGTGGGGCCGGCTGGGGCACAGGGACCCAGGGGACCAGTGGGGCCCATAGGGGCCCCAGGGCCACCTGGACTGCCAGGACTCACTGCCCgatctgcagcagcagcagcggtgcCTTTGGTCCCTTTCTCGATGCAGAGTGAGGCCCCCGCTCCTACTGTGTCGGCCCCAGGTTGTCCTCAAGAGTGGGTTGGCTTCAGAGACAAATGCTATCACTTCTCCAAAGAGCTGCACAACTTTGACGATGCAAAGAAAAGCTGTGATGCCCAGACTGCGTCAATGGTGATCATTAACGATAACGATGAACAGAAATGGCTGCAAAAGCAGACCTCTGGAAAGGGCTACTTCTGGATGGGTCTgacagacagggaggaggagaatgCATGGCGCTGGCTGGATGGAACCGAACCTGCCTTCTCGCAGTGGAAGCCAGGACAGCCAGACAACTGGAGCCATGGGcacgagagaggagaggactgcgCTGGCCTCATCCACGAGGGATTGTGGAATGATTTCTTCTGTGAAGATCTCATCAGCTACATCTGCGAGAAAGCCATCGAGTATCCCAAAAACTCCAGGATTATAGCACCCGCTGTGgaaggagaagaaacagaggaggcATGGTTGAGTCAGAGGCGGTATGATGAGCATCATTAGGCCCCGCCCACAAGTGACACTAGCCATCTGACACCCTATGCATGGACATGCTATGTGGAGAGATACGAGGGACAAGCTTCACAAGCCTGAATCGAGACTGTGGCTGCATTCACTGAGATTTCCCCCACTGATAGCCAGATTCAGCTCTCCTCCAAAGTGAATCCAGACCACTACTTCCAGAATTTGCATTCCAGCAACATGACAATCAAGTGTTGAGGGGAAGATCAAtcgtttttttaaatttttttaataATCACCAAAGTAATTGACTCATATAGATTTGTCTCATTTAATTGTTTTTAAATGCTGTTTTTTGTGTGACGTTAAGTCCATTTATAACTGATTATCTGAATGTATATTTTCATATTGCGGTTTTTCAATGTAGACCATTATTTTACGGCGCCAATGGGACTCACCACAGTGTCTTTCACAGTTGATCGTCTAGTTCCTCCATAATTATGTGAGGTGCAAAATGATGCGCAAAATAAACCAAAGAAATGTCGCCGATATGTCCCTTCTCAAACATCAAGAACTGTCTAGCTATATATAAGTATGTTATTATACACATTCATCTAAATAAATGAAGTATTTACACATAATAA

Function

NR:

description
collectin-12

GO: NA

KEGG:

id description
K10062 COLEC12; collectin sub-family member 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562976.2 False 3451 mRNA 0.53 10 28637747 28698956
XM_036944235.1 True 2900 mRNA 0.54 9 28642207 28698956

Neighbor

gene id symbol gene type direction distance location
LOC110489944 LOC106590138 coding upstream 25710 28580623 ~ 28612037 (+)
mettl4 mettl4 coding upstream 248218 28377804 ~ 28389529 (+)
LOC110489939 LOC106590143 coding upstream 321377 28281872 ~ 28316370 (+)
myom1b LOC106590144 coding upstream 356019 28246518 ~ 28281728 (+)
chmp5b LOC106590149 coding upstream 410060 28222578 ~ 28227687 (+)
LOC110490831 LOC106590071 coding downstream 32120 28731076 ~ 28741476 (+)
LOC110489948 mrc1 coding downstream 57832 28756788 ~ 28777089 (+)
LOC110489949 mrc1 coding downstream 96124 28795080 ~ 28812062 (+)
LOC110489950 LOC106590132 coding downstream 127624 28826580 ~ 28837296 (+)
cacnb2a cacb2 coding downstream 152205 28851161 ~ 28963361 (+)
G1277178 clul1 non-coding upstream 6582 28626587 ~ 28631165 (+)
G1277177 NA non-coding upstream 11415 28625505 ~ 28626332 (+)
G1277174 clul1 non-coding upstream 17038 28619969 ~ 28620709 (+)
G1277128 NA non-coding upstream 21066 28614402 ~ 28616681 (+)
G1277145 NA non-coding upstream 92762 28544680 ~ 28544985 (+)
G1277186 NA non-coding downstream 2247 28701203 ~ 28703108 (+)
G1277276 NA non-coding downstream 113219 28812175 ~ 28812749 (+)
G1277277 NA non-coding downstream 114227 28813183 ~ 28813383 (+)
G1277281 NA non-coding downstream 119761 28818717 ~ 28819012 (+)
G1277283 NA non-coding downstream 122967 28821923 ~ 28822261 (+)
G1277159 NA other upstream 13529 28574316 ~ 28624218 (+)
G1276733 NA other upstream 381341 28190186 ~ 28256406 (+)
G1276288 NA other upstream 783734 27853618 ~ 27854013 (+)
G1275572 NA other upstream 1535720 27101309 ~ 27102027 (+)
kif9 kif9 other upstream 1675521 26960749 ~ 26974049 (+)
G1277279 NA other downstream 116410 28815366 ~ 28815810 (+)
G1279349 NA other downstream 1604077 30303033 ~ 30303419 (+)
htr5ab htr5a other downstream 1696911 30395817 ~ 30416375 (+)
G1279833 NA other downstream 2245215 30944171 ~ 30947330 (+)
G1281462 NA other downstream 3297211 31996167 ~ 31996513 (+)

Expression


Co-expression Network