LOC110489947 (LOC106590135)


Basic Information

Item Value
gene id LOC110489947
gene name LOC106590135
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 28701177 ~ 28724125 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562977.2
GCACTTGTGAAGCAATAGTCCCGCGAGAGGGGTGTCGTGGATACATGGATGCATGACCCTGCTGCTCCCAGTCCCAGTCGCGCTTGCGCAGCGTTTCTGACTTTCCCACTCTGTCCCCCGTACCATGGCGTCCACGGAGGAGGACGGCTCGGTTGAAGAGAaggaaaacaacaacaagaagaggACGAAAAGTGCCATCGCTGTCGCATGGCTTACATTTTACAACATCGCCATGACGGCCGGGTGGCTGGTTTTGGCTATAGCAATGATGCGCTTCTACATCCAGAAAGGCACACACAAGGGTCTGTACAAAAGTATAGCAAGGACACTCAAGTTTTTCCAGACCATTGCGCTAGTTGAGGTGGTGCATTGTGCAATCGGAATCGTGAGGACCTCTGTAATTGTGACTGGGGTTCAAGTATGTTCACGAATCTTCATGGTGTGGTTCATCACCAACAGCATCAAACAGATCCAGAACGAAGAAAGTGTAATCCTCTTCTTGGCCGTTTGGACGTTTACAGAGATTACCAGATATTCCTTCTATACATTCAATCTGCTCAACCACCTGCCATACTTCATCAAATGGGCCAGaTACAACATGTTTATCATCATGTACCCTCTCGGAGTGGCCGGAGAACTCCTGACCATTTACACTGCTCTGCCATATGTTCGCAAAACCGGAATGTTGTCCGTGAGGCTCCCCAACAAGTATAACGTCTCCTTTGACTACTACTACTTCCTCGTTATCGTCATGCTCTCCTATATCCCATtgttCCCACAGCTCTACTTCCACATGCTCCGTCAGAGGAGAAAGGTGCTTCTTGGGGAGATCATAGTAGAGAAGGATGAGTAGAACCGCCTCACAGTCCAGCAGCTGGCGTTCGTTTTGGGACAGCGAGTCAGCACAGCTCCCCTGCCGCCACATCCATTCACCTTTGGTACCGCGCTCCACCGCACTCCACATGCAACAAAATGGACCGGGAGAGTCGGACGAATACTAACATCGCAGGAATAGCCATGTTATAATCGCGGAAAAAGAATGAAACATCACAGTCACCACAATAACCCAACTGGACTAAATACAGTGCTGCAAGAGAAATCATAACCCAACAGGAATAACAGTCATCAGAATCGTCACTGAATCAGTCATCACCAAATTCATCAATCAACGAGAGGAATCATTACAGAACTGGAATAGTCATCATTGTGGAACGAATGAATAAATATCATCTCTAGCCCGGAATCATTATCATCGCAAAACTGGAACGTACTGCTGCCACTGTGTCTTCACTGTCCAGGTTTAGATATCTAGATCCCCAGAAAGAGAACGCACTGAATCCATCAGCCAGTGTGGCCACAGCATACTGCACTGAAACCTGATAGCATAATACTGCACTGATTACTTTCTACACCTgctaaaaaaacaaaatactggaAGGCGCCTGCTGTCCATTGAGTCAACCACACAGCAGACACATACTGCACCCACCTTCAGTGCAAGATAGTAGAAGTTCAAGGGAACCAGGGAATGGTGATATGGaaggctggaggaggagagatgatagTTGAGTCCCCtgagcagttttttttttttcaaacggCTATTTATTTTTGTAGAAATTTATAAGCGTTTTCCACCACAGTGATTTTATACGTAAATAGCGTGTGGCAACAATGACTAGACAGAAGCTTTAAAAAAATAGAAACAATTATGCATAGACGTATTATACCTCGACAATAAACAGACATTTGGGCAATATGCTGCTTCCTTGGTTTATGTGTGTTGTACTTTATTTGTAAACAATGTGAAACAGCAACATTAGTAGGCTATTTTATGCACAGATCGGATCATTTGAAGAATGACTTAATTTATTCACATATCACCTGGTTGGCAATATTATATGGTTTGTAAGGCAGTAATACACTTGTATTGAATGTTATTAGTACGTTCGGTGTAGCTGAGACTGCTCAAACTTCTTAACTTGTTTTCCTAATGTTCTCTCCatgttgctttaatgtttaccaagagctcagtcaaatgtatttacaagTGTGCATCTTAAACAAAGGTTACAACTTTACAGAAAAGCTCTTTGTTTTTTAAAAGTTCAAGCCAACTTAGAAGACAGAAGATAAGAGAGGAATGATTTCTGAGCTCTCACAGTCTTCAGTTAGTCACTGTTTTGTTCTTTATGCTTAAAAATCTGTGTTCGGGATCCCATTGTCCTGGTTGGTATTGTACTGGTAGTTAGCGTTAGATTCCCTCTACTAAAAGGTGCTACTGTGTCAGATCGTTTCAAACTTCTGTGCAGCTGAAGGAGAAACTGGAATAGGGATGGAGGTAGGAACGGAAAAacagaatgtgaaatgttttgGGGAAAAGATGTACCACTTGAAGTGTTTCTCTAATTATATGCACTGTGATATCGAGCCCCGTGCTACAGTGTACTGAATGAATTGACATAATGCTATGAATCAGGGTTagacaagaaagaaagaaacaataaaactcAATGTTCAAAAATCA
>TU1459005
AGCTGaatagtgtgcatgtgtgtgcatgcctcTATGTTCGTTAATAAtgactctcctctccctgtcagaTACAACATGTTTATCATCATGTACCCTCTCGGAGTGGCCGGAGAACTCCTGACCATTTACACTGCTCTGCCATATGTTCGCAAAACCGGAATGTTGTCCGTGAGGCTCCCCAACAAGTATAACGTCTCCTTTGACTACTACTACTTCCTCGTTATCGTCATGCTCTCCTATATCCCATtgttCCCACAGCTCTACTTCCACATGCTCCGTCAGAGGAGAAAGGTGCTTCTTGGGGAGATCATAGTAGAGAAGGATGAGTAGAACCGCCTCACAGTCCAGCAGCTGGCGTTCGTTTTGGGACAGCGAGTCAGCACAGCTCCCCTGCCGCCACATCCATTCACCTTTGGTACCGCGCTCCACCGCACTCCACATGCAACAAAATGGACCGGGAGAGTCGGACGAATACTAACATCGCAGGAATAGCCATGTTATAATCGCGGAAAAAGAATGAAACATCACAGTCACCACAATAACCCAACTGGACTAAATACAGTGCTGCAAGAGAAATCATAACCCAACAGGAATAACAGTCATCAGAATCGTCACTGAATCAGTCATCACCAAATTCATCAATCAACGAGAGGAATCATTACAGAACTGGAATAGTCATCATTGTGGAACGAATGAATAAATATCATCTCTAGCCCGGAATCATTATCATCGCAAAACTGGAACGTACTGCTGCCACTGTGTCTTCACTGTCCAGGTTTAGATATCTAGATCCCCAGAAAGAGAACGCACTGAATCCATCAGCCAGTGTGGCCACAGCATACTGCACTGAAACCTGATAGCATAATACTGCACTGATTACTTTCTACACCTgctaaaaaaacaaaatactggaAGGCGCCTGCTGTCCATTGAGTCAACCACACAGCAGACACATACTGCACCCACCTTCAGTGCAAGATAGTAGAAGTTCAAGGGAACCAGGGAATGGTGATATGGaaggctggaggaggagagatgatagTTGAGTCCCCtgagcagttttttttttttcaaacggCTATTTATTTTTGTAGAAATTTATAAGCGTTTTCCACCACAGTGATTTTATACGTAAATAGCGTGTGGCAACAATGACTAGACAGAAGCTTTAAAAAAATAGAAACAATTATGCATAGACGTATTATACCTCGACAATAAACAGACATTTGGGCAATATGCTGCTTCCTTGGTTTATGTGTGTTGTACTTTATTTGTAAACAATGTGAAACAGCAACATTAGTAGGCTATTTTATGCACAGATCGGATCATTTGAAGAATGACTTAATTTATTCACATATCACCTGGTTGGCAATATTATATGGTTTGTAAGGCAGTAATACACTTGTATTGAATGTTATTAGTACGTTCGGTGTAGCTGAGACTGCTCAAACTTCTTAACTTGTTTTCCTAATGTTCTCTCCatgttgctttaatgtttaccaagagctcagtcaaatgtatttacaagTGTGCATCTTAAACAAAGGTTACAACTTTACAGAAAAGCTCTTTGTTTTTTAAAAGTTCAAGCCAACTTAGAAGACAGAAGATAAGAGAGGAATGATTTCTGAGCTCTCACAGTCTTCAGTTAGTCACTGTTTTGTTCTTTATGCTTAAAAATCTGTGTTCGGGATCCCATTGTCCTGGTTGGTATTGTACTGGTAGTTAGCGTTAGATTCCCTCTACTAAAAGGTGCTACTGTGTCAGATCGTTTCAAACTTCTGTGCAGCTGAAGGAGAAACTGGAATAGGGATGGAGGTAGGAACGGAAAAacagaatgtgaaatgttttgGGGAAAAGATGTACCACTTGAAGTGTTTCTCTAATTATATGCACTGTGATATCGAGCCCCGTGCTACAGTGTACTGAATGAATTGACATAATGCTATGAATCAGGGTTagacaagaaagaaagaaac

Function

NR:

description
very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562977.2 False 2527 mRNA 0.43 7 28701177 28724125
TU1459005 True 1979 TUCP 0.42 2 28701202 28703553
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110489945 clul1 coding downstream 68657 28619838 ~ 28632520 (-)
tyms tyms coding downstream 81426 28616467 ~ 28619751 (-)
adcyap1a paca coding downstream 135636 28559194 ~ 28565541 (-)
smchd1 smchd1 coding downstream 323701 28337647 ~ 28377476 (-)
emilin2b LOC106590142 coding downstream 365356 28316887 ~ 28335821 (-)
LOC118938886 prex2 coding upstream 93714 28817839 ~ 28818590 (-)
nsun6 nsun6 coding upstream 243306 28967431 ~ 28976959 (-)
LOC118938887 LOC106590130 coding upstream 254476 28978601 ~ 28982268 (-)
gimap4 LOC106590126 coding upstream 671833 29395958 ~ 29400497 (-)
chmp4c chmp4c coding upstream 678161 29402286 ~ 29404544 (-)
G1277425 NA non-coding downstream 165009 28535873 ~ 28536168 (-)
G1277419 NA non-coding downstream 171288 28529675 ~ 28529889 (-)
G1277101 NA non-coding downstream 194745 28506222 ~ 28506432 (-)
G1277012 NA non-coding downstream 253377 28447593 ~ 28447800 (-)
G1276950 NA non-coding downstream 304528 28396253 ~ 28396649 (-)
G1277539 NA non-coding upstream 6235 28730360 ~ 28730687 (-)
G1277552 NA non-coding upstream 19790 28743915 ~ 28744248 (-)
G1277553 NA non-coding upstream 21641 28745766 ~ 28746478 (-)
G1277478 NA non-coding upstream 26566 28750691 ~ 28751365 (-)
G1277556 NA non-coding upstream 44577 28768702 ~ 28811015 (-)
G1276905 NA other downstream 435422 28261540 ~ 28265755 (-)
G1276639 NA other downstream 610336 28090494 ~ 28090841 (-)
G1276566 NA other downstream 741743 27959052 ~ 27959434 (-)
LOC110489905 LOC106590176 other downstream 1469698 27228878 ~ 27231497 (-)
G1278860 NA other upstream 906900 29631025 ~ 29631768 (-)
dlgap1b LOC106590111 other upstream 1255050 29979175 ~ 30253803 (-)
G1281361 NA other upstream 3140109 31864234 ~ 31864636 (-)
G1281363 NA other upstream 3141164 31865289 ~ 31866137 (-)
G1282159 LOC106590060 other upstream 3751794 32475919 ~ 32478516 (-)

Expression

LOC110489947(LOC106590135) Expression in all Baseline Samples

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LOC110489947(LOC106590135) Expression in each Bioproject

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LOC110489947(LOC106590135) Expression in each Sample
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Co-expression Network