LOC110490831 (LOC106590071)


Basic Information

Item Value
gene id LOC110490831
gene name LOC106590071
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 28731076 ~ 28741476 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564278.2
GGCCAAGGCCTAACCAGCCCTCAGAGGGACAGGGGTTGCTTCACTGCGACAAcagccccctctctccctccctccctcttttttttCAGTGCCCCCAGCACAGGGGCTGCCACAGCATGGCCTCGGGGAGGACGCTGAAGTTCGCCCTGTGCGAGGTGCTGCAGTTCGCAGGCCTGTGCGTGCCGCTCTTCATCGTCATGCAGAGGTTCGCCCTCATTGTAGCGCGGGTCAAGAGCATGGCGCAGCCACCCGGCGACGCAAGCACCGCCTACTGGCTCACCGTGGCCTCCTCCATCGCCTATGTCACCTCTGCTGCCCTGCTTGTCTGGGTGCCCATGAAGTACATGGTGTTCACGAATAAGAAGTTTCTTGTCGGGAGGAAGAAGTGgaggccGGTGGCCCTGGTCTATATGATCCTTTCCACATTACCCTGCTTTGCCTTTCTCATCGCCAGCTCAGAGGTGCAGATCAATAACAGTATAAGACAGGATACGTTTGCAGAGCTCCCCGTGTCGTTGGTGCTCTTCTCTCTCATCTGCATCGATATTGTGGAGAGGATCCGCCACAGTCGACTCACTGGACACGCTAACGAATTGGCCCGAGATGCTGAGATCCCTTCCACTCTCCTCACGAACGTAACCCCAGTGACACCGGTAAACCCAGAAAACCCTGCGGCACCCGTAATGCCAGGTGTGCCCAGGCACCCTACACAACCAGGGCAACCTGGTAGTCCAAATGGGCAGGACCAGAACGGGGCGGGGTCTCAAACAGAGGCCAATTGGACACTCCAGGGGATGCCAGGTAACCAGATACAAGGCAGACAGTTCAGCATGTCAGGCCTGAGCTCGCGCTCGGCATGCTCTGCACGCTCGGCCAGCATGTCCGCAGACCACAGCGTCTCACCAAATGCCTACACAGGCGCGTTGCGCTTCTTGTGTGCCAGCGATGCCCGAGCCGAAGTGTTTGTGGACAGCTTTCTGTTCTGGATGGACACGGTGGAGATGGTGAGGGTGGCAGGGCACCCGGCGGTCTACTACTCGGGCTGGGTGTTCCCTATCTACATCTTCAGCTACCTGTCGTGCCTGCGGCTGGTAGTCATGCCCCACAGTCCCCTGCTGTCGTTGCTAGGCGTGGCCCTGCAGGATCTGCCTTTCCTGTTTGTGCGTATCGGCCTCATTGCCTTCTTCGGCTTTGTAACGCCACTCCTCTACCTGATGAAGAACTTGCTTGTTTGTCTGGCCTTCATCTACTTCAACTTCATGACCAAGCTGAGGGTCTTCAACACCGAGAGGATGTTCTGATGTGAGCTGCCGGCCACGTATGAGAAAAAACTATGGACTGTGATAGACTTTATGACAGAGACAAATGAGTCACCAAAACAAAGGAAGACAAAAACAAGAACAGGCTCACACAGCGATGACAATAGGATGTTATGGAGAACATGAGAAGAATTGGAGAGCATTACTGTGTGCACCACAGCCAAGACAGATGGATCCATTTCATAATGATGATTTTGATGAAAGGAGGGACAGGACGACATTGTGGTGCTTTTTTCAAGTTAAAAGGGAACTCTTCGGTAATGTGTTCCCGTAAAGGGGAGGGAGGACATTAACTGTCAGATGACTATGTGATGTCTCAGTGTTATCTTATTTCCTCCTTGTTCCAAGTGGGATTGTTTTACCCTCCAATTCCCCTTGCCCCCAACCTGAACTATGGCACTTTGAGAATGTAAAAAACCTGTCATGTCACTTCTTACAGATTTTATAACAGAGAATATATGATTTTTCTATTCTATTACTAAGTGCAGTGAATGTGTAAgaatatacatcaatgttgttttaCATCCCAGATGTATTTTCTTTGCTAGGTTATGATATTATCCACAAAAACAAAGCGTGAGTTTGTACAAATGAaacatattttttgggggggtaaaaaataataaag

Function

NR:

description
transmembrane protein 236

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564278.2 True 1947 mRNA 0.51 4 28731076 28741476

Neighbor

gene id symbol gene type direction distance location
LOC100136716 LOC106590136 coding upstream 32120 28637747 ~ 28698956 (+)
LOC110489944 LOC106590138 coding upstream 119039 28580623 ~ 28612037 (+)
mettl4 mettl4 coding upstream 341547 28377804 ~ 28389529 (+)
LOC110489939 LOC106590143 coding upstream 414706 28281872 ~ 28316370 (+)
myom1b LOC106590144 coding upstream 449348 28246518 ~ 28281728 (+)
LOC110489948 mrc1 coding downstream 15312 28756788 ~ 28777089 (+)
LOC110489949 mrc1 coding downstream 53604 28795080 ~ 28812062 (+)
LOC110489950 LOC106590132 coding downstream 85104 28826580 ~ 28837296 (+)
cacnb2a cacb2 coding downstream 109685 28851161 ~ 28963361 (+)
arl8 LOC106590131 coding downstream 242003 28983479 ~ 28996322 (+)
G1277186 NA non-coding upstream 27968 28701203 ~ 28703108 (+)
G1277178 clul1 non-coding upstream 99911 28626587 ~ 28631165 (+)
G1277177 NA non-coding upstream 104744 28625505 ~ 28626332 (+)
G1277174 clul1 non-coding upstream 110367 28619969 ~ 28620709 (+)
G1277128 NA non-coding upstream 114395 28614402 ~ 28616681 (+)
G1277276 NA non-coding downstream 70699 28812175 ~ 28812749 (+)
G1277277 NA non-coding downstream 71707 28813183 ~ 28813383 (+)
G1277281 NA non-coding downstream 77241 28818717 ~ 28819012 (+)
G1277283 NA non-coding downstream 80447 28821923 ~ 28822261 (+)
G1277284 NA non-coding downstream 80891 28822367 ~ 28822601 (+)
G1277159 NA other upstream 106858 28574316 ~ 28624218 (+)
G1276733 NA other upstream 474670 28190186 ~ 28256406 (+)
G1276288 NA other upstream 877063 27853618 ~ 27854013 (+)
G1275572 NA other upstream 1629049 27101309 ~ 27102027 (+)
kif9 kif9 other upstream 1768850 26960749 ~ 26974049 (+)
G1277279 NA other downstream 73890 28815366 ~ 28815810 (+)
G1279349 NA other downstream 1561557 30303033 ~ 30303419 (+)
htr5ab htr5a other downstream 1654391 30395817 ~ 30416375 (+)
G1279833 NA other downstream 2202695 30944171 ~ 30947330 (+)
G1281462 NA other downstream 3254691 31996167 ~ 31996513 (+)

Expression


Co-expression Network