LOC110489948 (mrc1)


Basic Information

Item Value
gene id LOC110489948
gene name mrc1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 28756788 ~ 28777089 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562980.2
GTGTCTGTGTCACTGTTCTTCCATGAGAGACACCTGAATACACCACAGCcagatccctctctcctctccgctctgGTCTGTACAGCTACTTTACACCACCTTTTTCGTCCTGGGATAGCAAACCTTGCACTAGCTACGATGGCATCCAGTCCATCCCTCGCTGTGCTCCTGTGCCTTATGCATGCTCTGCGCTGCACTGCTGAGATAGACAGCAGCTCCTTCCTGATCTACAACCAGGATCACAACAAGTGTGTGGTGGCGGTGAGCGCCAATCAAGTCACAGTGGCTCCCTGTGACCACACGTCCCAGAACCAGCAATTCCGCTGGGCCTCACAGTCTCGTCTCCTCAGCATCTCCCTGAAGCTCTGCCTGGGGGCTCAGGACCTGAAGGACTGGGTCAAGGTGCTGCTCTTCCCCTGTGATGAGAAGAGCGAGCTCCAGTACTGGCAGTGTAAGAACGAGACCCTGTTCGGCCTCAAAGACAAGGCGCTGCACTTAAACTATGGCAACCGCAACGAGAAGAATATGATGATCTACCAGGGATCTGGGTCTTGGAGCTGTTGGAAGATGTATGGTACTCAGAAAGACCTCTGCTCCAAGGGCTACCAAGAGGTGTTCACACTAGGGGGGAATGCCTTTGGAAGTCCCTGCCAGTTCCCCTTTCAGTTTGGGGAGAAGTGGTATGCTGAGTGCACTCCGCAGGGGCGCTCAGATGGACAGCTCTGGTGCGCCACAGAGACAGATTACAATAAAGCCAAGAAGTGGGGCTTCTGTCCCTCGAAATCGTCCTCAGGATGGGACAGTGACCCAGTGACAGGTGTCCTGTACCAGAGGAACACCCAGTCTGTGTTGACTTGGCACCAGGCGAGGAAGAGCTGCCAGCAGCAAGGAGCCGACCTGCTCAGTATAGTAGAGCTCCACGAGCAGACCTACATCTCAGGGTTGACCAATATCCTGGGCACATCTCTGTGGATTGGACTGAATAGCCTAGACTTTGAGGCTGGATGGCAGTGGagcaatggaaacccattcaGATATTTAAACTGGGCCCCAGGACATCCATCAACTGAACCCGGGCTCAGCTGTGCAACCCTGAATGCTGGCAAGGCCTCGAAATGGGAGACCAATGAATGTTCCAAGAAGCTGGGATATATCTGTCGCAAAGGAAACTCCACTGCTCTGGCCTCTGCCCCTATAGTAGGGAAAGATCAGCCCACCTTCTGCACCAGTCACTGGATTCCCTATGCAGGCCACTGCTACTACCTACAACGTACCAAGAAGATGTGGAGGGATGCCCTGGCCGCCTGCCACAAAGATGGAGGGGACCTGGCCAGCATCCACAACATAGAAGAACAAAGCTTCATCATCTCTCAGTCAGGATATACGGCCACAGATGAGCTGTGGATCGGCCTGAATGACCAAAGGAACGCATTGCTGTTTGAGTGGACCGACCGATCCCATGTGACATTCAGCCACTGGCAGACAGGGGAGCCCTCTCACGGTGCCAACCTCCAGGAGGACTGTGTCCTGATCAGAGGAAAGGATGGGAAGTGGgctgataatttgtgtgagaagACCTACGGGTACATGTGTAAGAAAAAGGCCTCCACCAAACCGGTGGCAGGTGCCCCGGAGGAAGATAGTCCAGGATGTAAGCTGGGCTGGATCCGGTATGGTTCTTACTGCTACAAAGTTGGATCagaaaccaaaacatttgatgAGGCCAAGCAGACCTGCCAGCAGAGTGACTCAATCCTGGTGGAAGTGGCTGACAGGTATGAAAATGCCTTCCTGGTCAGTTTGGTGGGTTTGAGGCCGGAGAAGTACTTCTGGAGTGGACtttccaacatggcggatatagaCACGTTCAAGTGGACTACCAGTTCGGAGGTCAAGTTCACCCACTTCAACGTGGGCATGCCAGACAGAAAACAAGGCTGCGTAGCTATGACAACTGGAATGTTTGCTGGTCTGTGGGATGTGGTCAGCTGCAGCAACAAGGAGAAGTACATCTGTAAGAAAATGGCGGAGGGCGTCACATCAACAATGGCTCCTCCCACCACCCCGGCACTGAGCTGTCCTTCTGGGTGGTCACCTGCTGCTAAAAGGAATGTCTGTTACAAGCTTTACAGAAAAGAGACTGCAAACAAGAAGTCATGGTCAGAGGCGCGGGAATTCTGCAAGGCCATTGGTGGTGATCTGATGAGCATTCACAGTGCCACAGACCTGAACAGCTCTCCGTATCATTCCTCTGATGCAGCCTGGATCGGCCTCAGCAATCTGGATCCCTCCGCAGGTTTCGTCTGGGCTGACGGATCAGCATTCAGCTATGAGAATTGGGGATTTGGAGAACCAAACGACTACAACGATAATGAAAAATGCACAGAGGTCCAGTTTTACTTCGGACGCCATTGGAATGATCGACACTGTGATGCCTACAATGACTGGATTTGCGAGATTCGCAAAGGGGTTACCCCAAAGCCCCATCCCACTCAAGTTGAGCCAGTGTACAACACTACAAAGGACGGCTGGATTGAGTACAACGACACTCAGTATTTCTTCAACACTGAGAATCTCCCCATGGACGAGGCGAGAGAATTCTGTAAAAAGAACTTTGGTGACCTGGTGGTCATCActgcagagagcgagaggaagttTATATGGAAACAGATATCTAGAGGATCCGAGGGACAATATTACATTGGAATGACCGTTGGTTTGGATAAGTCTTTTAGCTGGTTGGATGGGTCTCCTGTTGTGTTTACCGCATGGGATCAAAACGAACCCAACTTCGCCAACAATGATGAGAACTGTGTGACGATATACAAGAGTATGGGGTACTGGAATGACATCAACTGTGGCGTAGAGCTGGCCTCCATTTGTAAAAGAACCACCAGATTCACTAACACGACCATGGCCCCCACCACTGTACCCAAGGGAGGATGTGCCCCAGAATGGATTGCTTTCCAGGGGAAGTGCTACAAATTCATTGGAGACAGCGATAAGAAGCCGTGGCAGGAGGCCAGGACCTACTGCATTAACCAGGGAGGGAACCTGGCCTCTGTCCTTAGCGAGAACGAGCAAGCGTTCCTTACCACCCAGATGCTTGGGAATCCCCAGGACATTTGGATAGGTCTGAACGACATCAACTGGGAGATGCGCTTCCTATGGACGGAGGGGAGAGGGGTTTCCTATACCAACTGGGCAAAAGGGCATCCAACGTCAGTGCCAGACGGAAGATATTCATTTATGGAAGAGGTGTTTGACTGTGTGGTTCTGGTGGGCAGCTCTCAAAAACAGACAGGAATGTGGAAGGTCGAGGACTGCTTAGTATCCCGTGGTTTTATCTGCAAAAGGAATATTGATTCTCAGATTGTGGTCCCTGCCACCACAGAGTCAACGAAGACATTCTACAAGCTGGGAAATGACTCCTTCAAACTGGTGGTCCAGAAGATGAACTGGGACGAGGCCCGGAGGCAATGTAAAGCAGACGATGCAGAGATGGCTAGCATCCTGAACCCCATCACCCAGGCCTTCATCACAATGCAGATCCAAAAATACAATGGGCCCATGTGGATTGGCCTCAACAACAATTTGactgAAGGGCATTTTAAGTGGGTGGATAACTGGCCTCTATCTTACACCAAATGGGGCGTAGATGAGCCAAAGAACAATATTGCCTGTGTTTACATGGATACAGACGCCAAGTGGAAGACAGGCGACTGTAGTAACACCTACTCCTCACTGTGCAAGAGATCACCAGACATAGCCCCCAGCCAGCCCCCTCAGCTCCCTGGCAACTGCCCCGAGCCCAAGAAACGCAAGACGTGGGTTCCCTTCAGGGGTTACTGCTACGCCTTCCTCAACTCTGTGGTGGACAACTGGGCCCACGCCACTGTGGAATGTCTCCGAATGGGAGCATCCCTGGTGAGTGTCGAGGATCCCTTGGAGGCCAGCTTCATCCAGAAGAACCTTGAGCTACTGCAGGATGGATCCAAGTCATTCTGGATTGGCATGCACAAGAGCCACGAAGGTGACTGGATGTGGATTGACAACAGTGTGGTGGACTATACCAACTGGAAACAAGGGATGCCAAAGAGTGGAGAACAATGTGTGGAGATCCAGTCTGATAGTGGTCTTTGGAGCACTAACAGCTGCAACCGGTACAAGTCGTACATCTGCAAAACAGCCAAAGTCATCACACCAACAGAGAAGCAACCAGTTGCTGCTCCCCTAGTGGAGGAAGCTACCCATGGTTATGCCGGCATCGCTGTGGCAGTCGTCTTGGTGATAATCACAGTGGTAGGACTCGGTGCCTTCCTACTCCGCAAACGGATGCCTACCCCCGTCCTGGGAGAGTGTACTTTCGACAACACCTTGTACTTCAACAACCCCATCCGCCCAACAGCCACTGTGGACACCAAGGGCCTGGTGGCCAACATAGAGCAGAACGAAACAGCTTAGACAGGACACAAAGAACCACCAACAGGTGAAAACACTCTTGAGACAAGTTTTGATATGAAAAATACCCCAAAAGCATGCTGCTGGTGTTAAGGCCTACCAATTCTGAGATTGCAACTAAATCTGAAACCATTCACGTATTATCTTTGTTAATTTTCTTGCTCTGTAAATAATGGGTGAAAATTATATGCACTTTGTGCATATCAGCATCAGTCATCAAGGATACAGTCCAGATGTACAGCCAAGACTGCATATGCAACCCCTGCACAAATTATAGAATCAACAACAGTCATTTTGTTTGGTTTAATGGAGACTTGTACAGATTTATTTGGTGTGTGAAACTAAAGTTCAAAATACAACCACTGTACTTTGCTTTGTTTTTGCTAAGTTATATTGTAAATATAtgctcaaagagagagaaataaagtttTGAAACAAA

Function

symbol description
mrc1 Enables cargo receptor activity. Involved in receptor-mediated endocytosis. Located in endosome membrane and plasma membrane.

NR:

description
macrophage mannose receptor 1-like

GO: NA

KEGG:

id description
K06560 MRC, CD206, CD280; mannose receptor, C type

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562980.2 True 4900 mRNA 0.50 30 28756788 28777089

Neighbor

gene id symbol gene type direction distance location
LOC110490831 LOC106590071 coding upstream 15312 28731076 ~ 28741476 (+)
LOC100136716 LOC106590136 coding upstream 57832 28637747 ~ 28698956 (+)
LOC110489944 LOC106590138 coding upstream 144751 28580623 ~ 28612037 (+)
mettl4 mettl4 coding upstream 367259 28377804 ~ 28389529 (+)
LOC110489939 LOC106590143 coding upstream 440418 28281872 ~ 28316370 (+)
LOC110489949 mrc1 coding downstream 17991 28795080 ~ 28812062 (+)
LOC110489950 LOC106590132 coding downstream 49491 28826580 ~ 28837296 (+)
cacnb2a cacb2 coding downstream 74072 28851161 ~ 28963361 (+)
arl8 LOC106590131 coding downstream 206390 28983479 ~ 28996322 (+)
malrd1 malrd1 coding downstream 293265 29070354 ~ 29181202 (+)
G1277186 NA non-coding upstream 53680 28701203 ~ 28703108 (+)
G1277178 clul1 non-coding upstream 125623 28626587 ~ 28631165 (+)
G1277177 NA non-coding upstream 130456 28625505 ~ 28626332 (+)
G1277174 clul1 non-coding upstream 136079 28619969 ~ 28620709 (+)
G1277128 NA non-coding upstream 140107 28614402 ~ 28616681 (+)
G1277276 NA non-coding downstream 35086 28812175 ~ 28812749 (+)
G1277277 NA non-coding downstream 36094 28813183 ~ 28813383 (+)
G1277281 NA non-coding downstream 41628 28818717 ~ 28819012 (+)
G1277283 NA non-coding downstream 44834 28821923 ~ 28822261 (+)
G1277284 NA non-coding downstream 45278 28822367 ~ 28822601 (+)
G1277159 NA other upstream 132570 28574316 ~ 28624218 (+)
G1276733 NA other upstream 500382 28190186 ~ 28256406 (+)
G1276288 NA other upstream 902775 27853618 ~ 27854013 (+)
G1275572 NA other upstream 1654761 27101309 ~ 27102027 (+)
kif9 kif9 other upstream 1794562 26960749 ~ 26974049 (+)
G1277279 NA other downstream 38277 28815366 ~ 28815810 (+)
G1279349 NA other downstream 1525944 30303033 ~ 30303419 (+)
htr5ab htr5a other downstream 1618778 30395817 ~ 30416375 (+)
G1279833 NA other downstream 2167082 30944171 ~ 30947330 (+)
G1281462 NA other downstream 3219078 31996167 ~ 31996513 (+)

Expression


Co-expression Network