LOC110489949 (mrc1)


Basic Information

Item Value
gene id LOC110489949
gene name mrc1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 28795080 ~ 28812062 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562981.2
ACAGGATACACATCGGCTGGATTAAGGGGGCAGCATCCATGTCTCTGTGTCACTGTTCTTCCTTGAGAGACACCTGAATACACCACAGCcagatccctctctcctctctggactGTACAGCTACTTTACATCACCTTTTCGCCTTGGGATAGCAAACTATGCACTAGCTACGATGGCATCCAGTCCATCCCTCGCTGTGCTCCTGTGCCTTATGCATGCTCTGCGCTGCATTGCTGAGATAGACAGCAGCTCCTTCTTGATCTACAACCAGGATCACAACAAGTGTGTGGTGGCGGTGAGCGCCAATCAAGTCACAGTGGCTCCCTGTGACCACACGTCCCAGAACCAGCAATTCCGCTGGGCCTCACAGTCTCGTCTCCTCAGCATCTCCCTGAAGCTCTGCCTGGGGGCTCAGGACCTGAAGGACTGGGTCAAGGTGCTGCTCTTCCCCTGTGATGAGAAGAGCGAGCTCCAGTACTGGCAGTGTAAGAACGAGACCCTGTTCGGCCTCAAAGACAAGGCGCTGCACTTAAACTATGGCAACCGCAACGAGAAGAATATGATGATCTACCAGGGATCTGGGTCTTGGAGCTGTTGGAAGATGTATGGTACTCAGAAAGACCTCTGCTCCAAGGGCTACCAAGAGGTGTTCACACTAGGGGGGAATGCATTTGGAAGTCCCTGCCAGTTCCCCTTTCAGTTTGGGGAGAAGTGGTATGCTGAGTGCACTCCGCAGGGGCGCTCAGATGGACAGCTCTGGTGCGCCACAGAGACAGATTACAATAAAGCCAAGAAGTGGGGCTTCTGTCCCTCGAAATCGTCCTCGGGATGGGACAGTGACCCAGTGACAGGTGTCCTGTACCAGAGGAACACCCAGTCTGTGTTGACCTGGCACCAGGCGAGGAAGAGCTGCCAGCAGCAAGGAGCCGACCTGCTCAGTATAGTAGAGCTCCACGAGCAGACCTACATCTCAGGGTTGACCAATATCCTGGGCACATCTCTGTGGATTGGACTGAATAGCCTAGACTTTGAGGCTGGATGGCAGTGGagcaatggaaacccattcaGATATTTAAACTGGGCCCCAGGACATCCATCAACTGAACCCGGGCTCAGCTGTGCAACCCTGAATGCTGGCAAGGCCTCGAAATGGGAGACCAATGAATGTTCCAAGAAGCTGGGATATATCTGTCGCAAAGGAAACTCCACTGCTCTGGCCTCTGCCCCTATAGGAAAAGATCAGCCCACCTTCTGCACCAGTCACTGGATTCCCTATGCAGGCCACTGCTACTACCTACAACGTACCAAGAAGATGTGGAGGGATGCCCTGGCCGCCTGCCACAAAGATGGAGGGGACCTGGCCAGCATCCACAACATAGAAGAACAAAGCTTCATCATCTCTCAGTCAGGATATACGGCCACAGATGTGCTGTGGATCGGCCTGAATGACCAAAGGAACGCATTGCTGTTTGAGTGGACCGACCGATCCCATGTGACATTCAGCCACTGGCAGACAGGGGAGCCCTCTCACGGTGCCAACCTCCAGGAGGACTGTGTCCTGATCAGAGGAAAGGATGGGAAGTGGgctgataatttgtgtgagaagACCTACGGGTACATGTGTAAGAAAAAGGCCTCCACCAAACCGGTGGCAGGTGCCCCGGAGGAAGATAGTCCAGGATGTAAGCTGGGCTGGATCCGGTATGGTTCTTACTGCTACAACGTTGGATCagaaaccaaaacatttgatgaaGCCAAGCAGACCTGCCAGCAGAGTGACTCAATCCTGGTGGAAGTGGCTGACAGGTATGAAAATGCCTTCCTGGTCAGTTTGGTGGGTTTGAGGCCGGAGAAGTACTTCTGGAGTGGACtttccaacatggcggatatagaCACGTTCAAGTGGACTACCAGTTCGGAGGTCAAGTTCACCCACTTCAACGTGGGCATGCCAGACAGAAAACAAGGCTGCGTAGCTATGACAACTGGAATGTTTGCTGGTCTGTGGGATGTGGTCAGCTGCAGCAACAAGGAGAAGTACATCTGTAAGAAAATGGCGGAGGGCGTCACATCAACAATGGCCCCTCGCACCACCCCGGCACTGAGCTGTCCTTCTGGGTGGTCACCTGCTGCTAAAAGGAATGTCTGTTACAAGCTTTACAGAAAAGAGACTGAAAACAAGAAGTCATGGTCAGAGGCGCGGGAATTCTGCAAGGCCATTGGTGGTGATCTGATGAGCATTCACAGTGCCACAGACCTGAACGGCTCTCCGTATCATTCCTCTGATGCAGCCTGGATCGGCCTCAGCAATCTGGATCCCTCCGCAGGTTTCGTCTGGGCTGACGGATCAGCATTCAGCTATGAGAATTGGGGATTTGGAGAACCAAACGACTACAACGATAATGAAAAATGCGCAGAGGTCCAGTTTTACTACGGACGCCACTGGAATGATCGACACTGTGATGCCTACAATGACTGGATTTGCGAGATTCGCAAAGGGGTTACCCCAAAGCCCCATCCCACTCAAGTTGAGCCAGTGTACAACACTACAAAGGACGGCTGGATTGAGTACAACGACACTCAGTATTTCTTCAACACTGAGAATCTCCCCATGGACGAGGCGAGAGAATTCTGTAAAAAGAACTTTGGTGACCTGGTGGTCATCActgcagagagcgagaggaagttTATATGGAAACAGATATCTAGAGGATCCGAGGGACAATATTACATTGGAATGACCGTTGGTTTGGATAAGTCTTTTAGCTGGTTGGATGGGTCTCCTGTTGTGTTTACCGCGTGGGATCAAAACGAACCCAACTTCGCCAACAACGATGAGAACTGTGTGACGATATACAAGAGTATGGGGTACTGGAATGACATCAACTGTGGCGTAGAGCTGGCCTCCATTTGTAAAAGAACCACCAGTTTCACTAACACGACCATGGCCCCCACCACTGTACCCAAGGGAGGATGTGCCCCAGAATGGATTGCTTTCCAGGGGAAGTGCTACAAATTCATTGGAGACAGCGATAAGAAGCCGTGGCAGGAGGCCAGGACCTACTGCATCAACCAGGGAGGGAACCTGGCCTCTGTCCTCAGCGAGAAAGAGCAAGCATTCCTTACCACCCAGATGCTTGGGAATCCTCAGGACATTTGGATAGGACTGAACGACGTCAACTCGGAGATGAGCTTCCTATGGACGGAGGGGAGAGGTGTTTCCTATACCAACTGGGCAAAAGGGCATCCAACGTCAGTGCCAGACGGACGATATTCATTTTTGGAAGAGGTGTTTGACTGTGTGGTTCTGGTGGGCAGCTCTCAAAAACAGACAGGAATGTGGAAGGTCGAGGACTGCTTAGTATCCCGTGGTTTCATCTGCAAAAGGAATATTGATTCTCAGATTGTGGTCCCTGCCACCACAGAGTCAACGAAGACGTTCTACAAGCTGGGAAATGACTCCTTCAAACTGGTGGTCCAGAAGATGAACTGGGACGAGGCCCGGAGGCAATGTAAAGCAGACGATGCTGAGATGGCTAGCATCCTGAACCCCATCACCCAGGCCTTCATCACAATGCAGAGCCACAAATACAATGAGCCCATGTGGATCGGCCTCAACAACAACTTGactgAAGGGCATTTTAAGTGGGTGGATAACTGGCCTCTATCTTACACCAAATGGGGCGTAGATGAGCCAAAGAACAATATTGCCTGTGTTTACATGGATACAGACGCCAAGTGGAAGACAGGCGACTGTAGTAACACCTACTCCTCACTGTGCAAGAGATCACCAGACATAGCCCCCAGCCAGCCCCCTCAGCTCCCTGGCAACTGCCCCGAGCCCAAGAAACGCAAGACGTGGGTTCCCTTCAGGGGTTACTGCTACGCCTTCCTCAACTCTGTGGTGGACAACTGGGCCCACGCCACTGTGGAATGTCTCCGAATGGGAGCATCCCTGGTGAGTgtcgaggatccattggaggccAGCTTCATCCAGGAGAACCTTGAGCTACTGCAGGATGGATCCAAGTCATTCTGGATTGGCATGCACAAAAGCCACGAAGGTGACTGGATGTGGATTGACAACAGTGTGGTGGACTATACCAACTGGAAACAAGGGATGCCAAAGAGTGGAGAACAATGTGTGGAGATCCAGTCAAATAGTGGTCTGTGGAGCACTAACAGCTGCAACCGGTACAAGTCATACATCTGCAAAACAGCCAAAGTCATCACACCAACAGAGAAGCAACCAGTTGCTGCTCCCCTAGTGGAGGAAGCTCCCCATGGTTATGCCGGCATCGCTGTGGCAGTCGTCTTGGTGATAATCACAGTGGTAGGACTCGGTGCCTTCCTACTCCGCAAACGGATACCTACCCCCGTCCTGGGAGAGTGTACTTTCGACAACACCTTGTACTTCAACAACCCCATCCGCCCAACAGCCACTGTGGACACCAAGGGCCTGGTGGCCAACATAGAGCAGAACGAAACAGCTTAGACGGGACACAAAGAACCACCAACAGGTGAAAACACTCTTGAGACAAGTTTTGATATGAAAAATACCCCAAAAGCATGCTGCTGGTGTTAAGGCCTACCAATTCTGAGATTGCAACTAAATCTGAAACCATTCACGTATTATCTTTGTTAATTTTCTTGCTCTGTAAATAATGGGTAAAAATTATATGCACTTTGTGCATATCAGCATCAGTTGTCAAGGATACAGTCCAGATGTACAGCCAAGACTGCATATGCAACCCCTGCACAAATTATAGAATCAACAACAGTCATTTTGTTTGGTTTAAAGGAGCCTTGTACAGATTTATTTGGTGTGTGAAACTAAAGTTCAAAATACAACCACTGTACTTTGCTTTGTTTTTGCAAAGTTATATTGTAAATATATGCTCAAAGAGAGAAATAAAGTTTTGAAACAAA
>XM_036944237.1
ACAGGATACACATCGGCTGGATTAAGGGGGCAGCATCCATGTCTCTGTGTCACTGTTCTTCCTTGAGAGACACCTGAATACACCACAGCcagatccctctctcctctctggactGTACAGCTACTTTACATCACCTTTTCGCCTTGGGATAGCAAACTATGCACTAGCTACGATGGCATCCAGTCCATCCCTCGCTGTGCTCCTGTGCCTTATGCATGCTCTGCGCTGCATTGCTGAGATAGACAGCAGCTCCTTCTTGATCTACAACCAGGATCACAACAAGTGTGTGGTGGCGGTGAGCGCCAATCAAGTCACAGTGGCTCCCTGTGACCACACGTCCCAGAACCAGCAATTCCGCTGGGCCTCACAGTCTCGTCTCCTCAGCATCTCCCTGAAGCTCTGCCTGGGGGCTCAGGACCTGAAGGACTGGGTCAAGGTGCTGCTCTTCCCCTGTGATGAGAAGAGCGAGCTCCAGTACTGGCAGTGTAAGAACGAGACCCTGTTCGGCCTCAAAGACAAGGCGCTGCACTTAAACTATGGCAACCGCAACGAGAAGAATATGATGATCTACCAGGGATCTGGGTCTTGGAGCTGTTGGAAGATGTATGGTACTCAGAAAGACCTCTGCTCCAAGGGCTACCAAGAGGTGTTCACACTAGGGGGGAATGCATTTGGAAGTCCCTGCCAGTTCCCCTTTCAGTTTGGGGAGAAGTGGTATGCTGAGTGCACTCCGCAGGGGCGCTCAGATGGACAGCTCTGGTGCGCCACAGAGACAGATTACAATAAAGCCAAGAAGTGGGGCTTCTGTCCCTCGAAATCGTCCTCGGGATGGGACAGTGACCCAGTGACAGGTGTCCTGTACCAGAGGAACACCCAGTCTGTGTTGACCTGGCACCAGGCGAGGAAGAGCTGCCAGCAGCAAGGAGCCGACCTGCTCAGTATAGTAGAGCTCCACGAGCAGACCTACATCTCAGGGTTGACCAATATCCTGGGCACATCTCTGTGGATTGGACTGAATAGCCTAGACTTTGAGGCTGGATGGCAGTGGagcaatggaaacccattcaGATATTTAAACTGGGCCCCAGGACATCCATCAACTGAACCCGGGCTCAGCTGTGCAACCCTGAATGCTGGCAAGGCCTCGAAATGGGAGACCAATGAATGTTCCAAGAAGCTGGGATATATCTGTCGCAAAGGAAACTCCACTGCTCTGGCCTCTGCCCCTATAGTAGGAAAAGATCAGCCCACCTTCTGCACCAGTCACTGGATTCCCTATGCAGGCCACTGCTACTACCTACAACGTACCAAGAAGATGTGGAGGGATGCCCTGGCCGCCTGCCACAAAGATGGAGGGGACCTGGCCAGCATCCACAACATAGAAGAACAAAGCTTCATCATCTCTCAGTCAGGATATACGGCCACAGATGTGCTGTGGATCGGCCTGAATGACCAAAGGAACGCATTGCTGTTTGAGTGGACCGACCGATCCCATGTGACATTCAGCCACTGGCAGACAGGGGAGCCCTCTCACGGTGCCAACCTCCAGGAGGACTGTGTCCTGATCAGAGGAAAGGATGGGAAGTGGgctgataatttgtgtgagaagACCTACGGGTACATGTGTAAGAAAAAGGCCTCCACCAAACCGGTGGCAGGTGCCCCGGAGGAAGATAGTCCAGGATGTAAGCTGGGCTGGATCCGGTATGGTTCTTACTGCTACAACGTTGGATCagaaaccaaaacatttgatgaaGCCAAGCAGACCTGCCAGCAGAGTGACTCAATCCTGGTGGAAGTGGCTGACAGGTATGAAAATGCCTTCCTGGTCAGTTTGGTGGGTTTGAGGCCGGAGAAGTACTTCTGGAGTGGACtttccaacatggcggatatagaCACGTTCAAGTGGACTACCAGTTCGGAGGTCAAGTTCACCCACTTCAACGTGGGCATGCCAGACAGAAAACAAGGCTGCGTAGCTATGACAACTGGAATGTTTGCTGGTCTGTGGGATGTGGTCAGCTGCAGCAACAAGGAGAAGTACATCTGTAAGAAAATGGCGGAGGGCGTCACATCAACAATGGCCCCTCGCACCACCCCGGCACTGAGCTGTCCTTCTGGGTGGTCACCTGCTGCTAAAAGGAATGTCTGTTACAAGCTTTACAGAAAAGAGACTGAAAACAAGAAGTCATGGTCAGAGGCGCGGGAATTCTGCAAGGCCATTGGTGGTGATCTGATGAGCATTCACAGTGCCACAGACCTGAACGGCTCTCCGTATCATTCCTCTGATGCAGCCTGGATCGGCCTCAGCAATCTGGATCCCTCCGCAGGTTTCGTCTGGGCTGACGGATCAGCATTCAGCTATGAGAATTGGGGATTTGGAGAACCAAACGACTACAACGATAATGAAAAATGCGCAGAGGTCCAGTTTTACTACGGACGCCACTGGAATGATCGACACTGTGATGCCTACAATGACTGGATTTGCGAGATTCGCAAAGGGGTTACCCCAAAGCCCCATCCCACTCAAGTTGAGCCAGTGTACAACACTACAAAGGACGGCTGGATTGAGTACAACGACACTCAGTATTTCTTCAACACTGAGAATCTCCCCATGGACGAGGCGAGAGAATTCTGTAAAAAGAACTTTGGTGACCTGGTGGTCATCActgcagagagcgagaggaagttTATATGGAAACAGATATCTAGAGGATCCGAGGGACAATATTACATTGGAATGACCGTTGGTTTGGATAAGTCTTTTAGCTGGTTGGATGGGTCTCCTGTTGTGTTTACCGCGTGGGATCAAAACGAACCCAACTTCGCCAACAACGATGAGAACTGTGTGACGATATACAAGAGTATGGGGTACTGGAATGACATCAACTGTGGCGTAGAGCTGGCCTCCATTTGTAAAAGAACCACCAGTTTCACTAACACGACCATGGCCCCCACCACTGTACCCAAGGGAGGATGTGCCCCAGAATGGATTGCTTTCCAGGGGAAGTGCTACAAATTCATTGGAGACAGCGATAAGAAGCCGTGGCAGGAGGCCAGGACCTACTGCATCAACCAGGGAGGGAACCTGGCCTCTGTCCTCAGCGAGAAAGAGCAAGCATTCCTTACCACCCAGATGCTTGGGAATCCTCAGGACATTTGGATAGGACTGAACGACGTCAACTCGGAGATGAGCTTCCTATGGACGGAGGGGAGAGGTGTTTCCTATACCAACTGGGCAAAAGGGCATCCAACGTCAGTGCCAGACGGACGATATTCATTTTTGGAAGAGGTGTTTGACTGTGTGGTTCTGGTGGGCAGCTCTCAAAAACAGACAGGAATGTGGAAGGTCGAGGACTGCTTAGTATCCCGTGGTTTCATCTGCAAAAGGAATATTGATTCTCAGATTGTGGTCCCTGCCACCACAGAGTCAACGAAGACGTTCTACAAGCTGGGAAATGACTCCTTCAAACTGGTGGTCCAGAAGATGAACTGGGACGAGGCCCGGAGGCAATGTAAAGCAGACGATGCTGAGATGGCTAGCATCCTGAACCCCATCACCCAGGCCTTCATCACAATGCAGAGCCACAAATACAATGAGCCCATGTGGATCGGCCTCAACAACAACTTGactgAAGGGCATTTTAAGTGGGTGGATAACTGGCCTCTATCTTACACCAAATGGGGCGTAGATGAGCCAAAGAACAATATTGCCTGTGTTTACATGGATACAGACGCCAAGTGGAAGACAGGCGACTGTAGTAACACCTACTCCTCACTGTGCAAGAGATCACCAGACATAGCCCCCAGCCAGCCCCCTCAGCTCCCTGGCAACTGCCCCGAGCCCAAGAAACGCAAGACGTGGGTTCCCTTCAGGGGTTACTGCTACGCCTTCCTCAACTCTGTGGTGGACAACTGGGCCCACGCCACTGTGGAATGTCTCCGAATGGGAGCATCCCTGGTGAGTgtcgaggatccattggaggccAGCTTCATCCAGGAGAACCTTGAGCTACTGCAGGATGGATCCAAGTCATTCTGGATTGGCATGCACAAAAGCCACGAAGGTGACTGGATGTGGATTGACAACAGTGTGGTGGACTATACCAACTGGAAACAAGGGATGCCAAAGAGTGGAGAACAATGTGTGGAGATCCAGTCAAATAGTGGTCTGTGGAGCACTAACAGCTGCAACCGGTACAAGTCATACATCTGCAAAACAGCCAAAGTCATCACACCAACAGAGAAGCAACCAGTTGCTGCTCCCCTAGTGGAGGAAGCTCCCCATGGTTATGCCGGCATCGCTGTGGCAGTCGTCTTGGTGATAATCACAGTGGTAGGACTCGGTGCCTTCCTACTCCGCAAACGGATACCTACCCCCGTCCTGGGAGAGTGTACTTTCGACAACACCTTGTACTTCAACAACCCCATCCGCCCAACAGCCACTGTGGACACCAAGGGCCTGGTGGCCAACATAGAGCAGAACGAAACAGCTTAGACGGGACACAAAGAACCACCAACAGGTGAAAACACTCTTGAGACAAGTTTTGATATGAAAAATACCCCAAAAGCATGCTGCTGGTGTTAAGGCCTACCAATTCTGAGATTGCAACTAAATCTGAAACCATTCACGTATTATCTTTGTTAATTTTCTTGCTCTGTAAATAATGGGTAAAAATTATATGCACTTTGTGCATATCAGCATCAGTTGTCAAGGATACAGTCCAGATGTACAGCCAAGACTGCATATGCAACCCCTGCACAAATTATAGAATCAACAACAGTCATTTTGTTTGGTTTAAAGGAGCCTTGTACAGATTTATTTGGTGTGTGAAACTAAAGTTCAAAATACAACCACTGTACTTTGCTTTGTTTTTGCAAAGTTATATTGTAAATATATGCTCAAAGAGAGAAATAAAGTTTTGAAACAAA

Function

symbol description
mrc1 Enables cargo receptor activity. Involved in receptor-mediated endocytosis. Located in endosome membrane and plasma membrane.

NR:

description
macrophage mannose receptor 1-like

GO: NA

KEGG:

id description
K06560 MRC, CD206, CD280; mannose receptor, C type

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562981.2 False 4929 mRNA 0.50 30 28795080 28812062
XM_036944237.1 True 4932 mRNA 0.50 30 28795080 28812062

Neighbor

gene id symbol gene type direction distance location
LOC110489948 mrc1 coding upstream 17991 28756788 ~ 28777089 (+)
LOC110490831 LOC106590071 coding upstream 53604 28731076 ~ 28741476 (+)
LOC100136716 LOC106590136 coding upstream 96124 28637747 ~ 28698956 (+)
LOC110489944 LOC106590138 coding upstream 183043 28580623 ~ 28612037 (+)
mettl4 mettl4 coding upstream 405551 28377804 ~ 28389529 (+)
LOC110489950 LOC106590132 coding downstream 14518 28826580 ~ 28837296 (+)
cacnb2a cacb2 coding downstream 39099 28851161 ~ 28963361 (+)
arl8 LOC106590131 coding downstream 171417 28983479 ~ 28996322 (+)
malrd1 malrd1 coding downstream 258292 29070354 ~ 29181202 (+)
plxdc2 LOC106578707 coding downstream 395198 29207260 ~ 29383520 (+)
G1277186 NA non-coding upstream 91972 28701203 ~ 28703108 (+)
G1277178 clul1 non-coding upstream 163915 28626587 ~ 28631165 (+)
G1277177 NA non-coding upstream 168748 28625505 ~ 28626332 (+)
G1277174 clul1 non-coding upstream 174371 28619969 ~ 28620709 (+)
G1277128 NA non-coding upstream 178399 28614402 ~ 28616681 (+)
G1277276 NA non-coding downstream 113 28812175 ~ 28812749 (+)
G1277277 NA non-coding downstream 1121 28813183 ~ 28813383 (+)
G1277281 NA non-coding downstream 6655 28818717 ~ 28819012 (+)
G1277283 NA non-coding downstream 9861 28821923 ~ 28822261 (+)
G1277284 NA non-coding downstream 10305 28822367 ~ 28822601 (+)
G1277159 NA other upstream 170862 28574316 ~ 28624218 (+)
G1276733 NA other upstream 538674 28190186 ~ 28256406 (+)
G1276288 NA other upstream 941067 27853618 ~ 27854013 (+)
G1275572 NA other upstream 1693053 27101309 ~ 27102027 (+)
kif9 kif9 other upstream 1832854 26960749 ~ 26974049 (+)
G1277279 NA other downstream 3304 28815366 ~ 28815810 (+)
G1279349 NA other downstream 1490971 30303033 ~ 30303419 (+)
htr5ab htr5a other downstream 1583805 30395817 ~ 30416375 (+)
G1279833 NA other downstream 2132109 30944171 ~ 30947330 (+)
G1281462 NA other downstream 3184105 31996167 ~ 31996513 (+)

Expression


Co-expression Network