LOC110489950 (LOC106590132)


Basic Information

Item Value
gene id LOC110489950
gene name LOC106590132
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 28826580 ~ 28837296 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562982.2
CAACCGGAGCACTATAAGGCAGGGGAACTGGCAGCTAATCCTCAGGAGCTTACACAATTCTTACTTCTTCTCATAAGAGGTTTTTACCGATGCAAGGGATTCTCCGAAAACAACACAAACCCTTCCTCTCCATCCACCAGAGTGAGAAAACAAAAGGTAGAGAGGGAAAAACGTTCTCTCTCACTTGCTTGCACTAATCCCTTTGTTGTGGAGTATTGAGGGGCCAGGGCTCTTGGCTGACTGGCCATCCCTGTGTAATGGGGGCTAATTCGGGTGAAGGGTGCCCAGCCAGCCCTCCTGCTGGCCATCCTCCACTAGATTAGGCAGGGCGGGTACATTTTTAAGGCCTCCcccagcccaaacacattctcccTCTCGTTGCTTCtagcctcgctctctctctaactctctttctctgtctgtctttctcaatCCTATTTTCCCTGCCTGATAAaacttctctcttcctctctgtctttctcaaacTCTTGGCtgcactctctccttctctttcattTCCTGTCCTCCTTGTCGTCTCTCCATCCAGCCCTAAGTCAGTGGCAGGGGTCCCAGCAGGGAGATGGGGGTCCCAGGTGGGACCATGCGGTTCTGGAGCCATGCTGTCCCCACATTGCTCCTTCTACCCCTGTGTCTGCTGGGGAGGATCGTGGAGGGCCAGGCCCCAGAACAGGGCAAGGAGAGGGGCTACCTGCAAGAGGCCATCAAGGCTCTACAACTTGGTTCTCAGACCCAGCTCCAGAGGGACCAGACAGGGTTCCTACTCTCCACTGTCCTCCAGGCTGTGCACTGTGCAGAACGGATTGGGGGATCACAGGAGCTCTGTGACAAGTGCCTCACTCCAGACCTTGTCCTCTCTGTCCTGGAGGATGATAGGAAGGCTTACCTCACCGAGGATGACTACCATAGAGTCTCCACCGTTTTGCTCTACTACATGATCAACATGGAACACCTGTGTGCCACcaacccctccccttcctccttttcctcctcctccttgtcacCTAGCTACCAGTACTACCTTCTGGCCCTGACCAACCTCCAACCTACAGAAGAAAGAGGCTTCCTCTCCTCCAATGAGATAGAGAGCATTCTGCAGCTCATCAACCAGAACTATCAACCACCTGCTCTAGAGACATCTGGCTCCTCCCACTCACAGTGTATCGATGCCTCCCATCTACTGGATGAGTTGGGGATCACAGATAGCCAAGgtgctgatccatcctcagtggCCACACTGTCTGCAGCCATCATCACCCACACCCTGCAGGGCCACTGTTTCAGCAAGAGGAACCTGCCCTCCCCTGCCTTCTTTACAGATTACATCTTCCAGTCCCTCAACCGCACCAGCAACCTACATGTCAGGGATTTGGAGGAGCTGCTGCACCAGCTTGGTGTGGGAGGTGGTAGTGGAGGGGCCTATCACTCACACTGCAGGGAGAAGCAGAGCAACACAGGCCCCTCCCATATAGGGTGTGTCCATGAGCTTTTGGGGATCAACACAGACTGGACACAGGTATGCTACTCAGCCAATCAGCTGGTGGATATTTTTGTTCTGGATCCGCATTTGCATATTTCCCGGGATCACTTCAAACAAATCTGCCCAGCTGTTATCCAGCAGTTGCTAGGGAATGCCTGTGAGTCCACAGAGCCAGCTCCACGAGGATCTCCACCCAGTGCCATTGAGAAATATGGCTACAGTACGGCTGCTGTGTTACTCATCACTGTGGGCTCCATGTTGGGCATCTGCCTGATCTTCTTCAACTCCTGCCAGGAGACCTACGCCCTCATCCTGCAGCTCTTTGTGGGCCTGGCCGTGGGAACCCTCTCAGGGGACGCCCTCCTGCACCTCATACCACAGATCCTTGGCCTCCATGACGACAGTCACCATTACGATCATCACTTTACTGAGGGAAAGGAATATCTGTGGAAGATTTTGGGAATCATCGCTGGAATCTACGGCTTTTTCCTCATCGAAAGGATCTTCTCCCTTGTGATGCCATCACATGGCCATGGTCACGGGGGCCTGGGCAATTCCCATGACCTCCCCCTGGAGCTCAACTGCAACGGCCAGTCACAGAGGGGCATGTCTATCTCAACCATGCAGCTGGGAACTGTGGAGGACTTAGAATGCACAGAAATCCCATCAGAGGAGGCTGAACCAAGAACCCCTACGCATCAGACGAGACAGGGTATTCCTGTACTGGCTGTGATGGTAATCGTGGGAGACAGCCTCCATAACTTTGCTGACGGCCTGGTGGTGGGGGCGGCCTTCTCCTCGTCCACCGAGACAGGCATGGCGACCACCGTGGCCATCCTCTGCCATGAAATCCCTCATGAAATGGGTGACTTTGCGGTGTTGCTAAGCTCAGGTCTCTCTGTGAGGAATGCAGTGATGATGAACCTCCTCAGTGCTCTGACGGCCTTCATCGGCCTCTACATCGGCCTCTTCGTCTCCTCGGAGCCAGAGGTCCAGCAGTGGATCTTCACCGTTACTGCGGGGATCTTCCTCTATCTGTCGCTGGTAGAGATGCTCCCAGAGATGAGTCGTGTGAAGACCAACAGGCCCTGTATCATGTTCCTCCTGCAGAACCTTGGTCTCCTAATGGGCTGGGCCTGTCTTCTGCTCCTTGCACTGTTTGAGCACAAACTTAAGTTTTgatgacaggacacacacacatcctactaTGGTATCTGCCATGCAAATATGTAATTGATGGCAATGTTGATGGTACTTTGTGGTCttgcttttttttgttgtcattttGACATCTTgtttattgattactgcattattTACTGACACACCATATGAAGACCGTGAACAGCACATTTAAAATGTCACAAGCAAGAAACATTTCACAAGTGACCGGATAATAGAGTGACGTGAATAGTAGCAGTGACGATGTGAATCAAATGTCATTTTAGATCCAGTGGTTACGCATAATGTGTTAGAGCTGGATGAATCCACTTTTGTATGAATCGGATGCCTAAATGTGATCTTTAGGACATGAACACATCTTCTGTGTGATGATTTATTTTTGTATGGCGTACTGTGTCACATAGGGCACATAGCTAGCTTGCAGTCTGTCTGTCACATCTATGTCTGGACATGATAGTGTCAGATGTCTAGTCTACAGTGCCAGACGAGATCTTTGTATACAGATACCTTGCTTGTATGTGTATATTTGCCATGAAATACAGTGtctccagaaagtattcagaccccttgactttttccacattttgttagtttagagccttttttctaaaattgattaaattgatggtttttatcatcaatctacagtcatggccaaaagttttgagaatgacccacatat
>XM_021562983.2
CAACCGGAGCACTATAAGGCAGGGGAACTGGCAGCTAATCCTCAGGAGCTTACACAATTCTTACTTCTTCTCATAAGAGGTTTTTACCGATGCAAGGGATTCTCCGAAAACAACACAAACCCTTCCTCTCCATCCACCAGAGTGAGAAAACAAAAGGTAGAGAGGGAAAAACGCCCTAAGTCAGTGGCAGGGGTCCCAGCAGGGAGATGGGGGTCCCAGGTGGGACCATGCGGTTCTGGAGCCATGCTGTCCCCACATTGCTCCTTCTACCCCTGTGTCTGCTGGGGAGGATCGTGGAGGGCCAGGCCCCAGAACAGGGCAAGGAGAGGGGCTACCTGCAAGAGGCCATCAAGGCTCTACAACTTGGTTCTCAGACCCAGCTCCAGAGGGACCAGACAGGGTTCCTACTCTCCACTGTCCTCCAGGCTGTGCACTGTGCAGAACGGATTGGGGGATCACAGGAGCTCTGTGACAAGTGCCTCACTCCAGACCTTGTCCTCTCTGTCCTGGAGGATGATAGGAAGGCTTACCTCACCGAGGATGACTACCATAGAGTCTCCACCGTTTTGCTCTACTACATGATCAACATGGAACACCTGTGTGCCACcaacccctccccttcctccttttcctcctcctccttgtcacCTAGCTACCAGTACTACCTTCTGGCCCTGACCAACCTCCAACCTACAGAAGAAAGAGGCTTCCTCTCCTCCAATGAGATAGAGAGCATTCTGCAGCTCATCAACCAGAACTATCAACCACCTGCTCTAGAGACATCTGGCTCCTCCCACTCACAGTGTATCGATGCCTCCCATCTACTGGATGAGTTGGGGATCACAGATAGCCAAGgtgctgatccatcctcagtggCCACACTGTCTGCAGCCATCATCACCCACACCCTGCAGGGCCACTGTTTCAGCAAGAGGAACCTGCCCTCCCCTGCCTTCTTTACAGATTACATCTTCCAGTCCCTCAACCGCACCAGCAACCTACATGTCAGGGATTTGGAGGAGCTGCTGCACCAGCTTGGTGTGGGAGGTGGTAGTGGAGGGGCCTATCACTCACACTGCAGGGAGAAGCAGAGCAACACAGGCCCCTCCCATATAGGGTGTGTCCATGAGCTTTTGGGGATCAACACAGACTGGACACAGGTATGCTACTCAGCCAATCAGCTGGTGGATATTTTTGTTCTGGATCCGCATTTGCATATTTCCCGGGATCACTTCAAACAAATCTGCCCAGCTGTTATCCAGCAGTTGCTAGGGAATGCCTGTGAGTCCACAGAGCCAGCTCCACGAGGATCTCCACCCAGTGCCATTGAGAAATATGGCTACAGTACGGCTGCTGTGTTACTCATCACTGTGGGCTCCATGTTGGGCATCTGCCTGATCTTCTTCAACTCCTGCCAGGAGACCTACGCCCTCATCCTGCAGCTCTTTGTGGGCCTGGCCGTGGGAACCCTCTCAGGGGACGCCCTCCTGCACCTCATACCACAGATCCTTGGCCTCCATGACGACAGTCACCATTACGATCATCACTTTACTGAGGGAAAGGAATATCTGTGGAAGATTTTGGGAATCATCGCTGGAATCTACGGCTTTTTCCTCATCGAAAGGATCTTCTCCCTTGTGATGCCATCACATGGCCATGGTCACGGGGGCCTGGGCAATTCCCATGACCTCCCCCTGGAGCTCAACTGCAACGGCCAGTCACAGAGGGGCATGTCTATCTCAACCATGCAGCTGGGAACTGTGGAGGACTTAGAATGCACAGAAATCCCATCAGAGGAGGCTGAACCAAGAACCCCTACGCATCAGACGAGACAGGGTATTCCTGTACTGGCTGTGATGGTAATCGTGGGAGACAGCCTCCATAACTTTGCTGACGGCCTGGTGGTGGGGGCGGCCTTCTCCTCGTCCACCGAGACAGGCATGGCGACCACCGTGGCCATCCTCTGCCATGAAATCCCTCATGAAATGGGTGACTTTGCGGTGTTGCTAAGCTCAGGTCTCTCTGTGAGGAATGCAGTGATGATGAACCTCCTCAGTGCTCTGACGGCCTTCATCGGCCTCTACATCGGCCTCTTCGTCTCCTCGGAGCCAGAGGTCCAGCAGTGGATCTTCACCGTTACTGCGGGGATCTTCCTCTATCTGTCGCTGGTAGAGATGCTCCCAGAGATGAGTCGTGTGAAGACCAACAGGCCCTGTATCATGTTCCTCCTGCAGAACCTTGGTCTCCTAATGGGCTGGGCCTGTCTTCTGCTCCTTGCACTGTTTGAGCACAAACTTAAGTTTTgatgacaggacacacacacatcctactaTGGTATCTGCCATGCAAATATGTAATTGATGGCAATGTTGATGGTACTTTGTGGTCttgcttttttttgttgtcattttGACATCTTgtttattgattactgcattattTACTGACACACCATATGAAGACCGTGAACAGCACATTTAAAATGTCACAAGCAAGAAACATTTCACAAGTGACCGGATAATAGAGTGACGTGAATAGTAGCAGTGACGATGTGAATCAAATGTCATTTTAGATCCAGTGGTTACGCATAATGTGTTAGAGCTGGATGAATCCACTTTTGTATGAATCGGATGCCTAAATGTGATCTTTAGGACATGAACACATCTTCTGTGTGATGATTTATTTTTGTATGGCGTACTGTGTCACATAGGGCACATAGCTAGCTTGCAGTCTGTCTGTCACATCTATGTCTGGACATGATAGTGTCAGATGTCTAGTCTACAGTGCCAGACGAGATCTTTGTATACAGATACCTTGCTTGTATGTGTATATTTGCCATGAAATACAGTGtctccagaaagtattcagaccccttgactttttccacattttgttagtttagagccttttttctaaaattgattaaattgatggtttttatcatcaatctacagtcatggccaaaagttttgagaatgacccacatat
>XM_036944238.1
CACTGTGGGCTCCATGTTGGGCATCTGCCTGATCTTCTTCAACTCCTGCCAGGAGACCTACGCCCTCATCCTGCAGCTCTTTGTGGGCCTGGCCGTGGGAACCCTCTCAGGGGACGCCCTCCTGCACCTCATACCACAGTCACCATTACGATCATCACTTTACTGAGGGAAAGGAATATCTGTGGAAGATTTTGGGAATCATCGCTGGAATCTACGGCTTTTTCCTCATCGAAAGGATCTTCTCCCTTGTGATGCCATCACATGGCCATGGTCACGGGGGCCTGGGCAATTCCCATGACCTCCCCCTGGAGCTCAACTGCAACGGCCAGTCACAGAGGGGCATGTCTATCTCAACCATGCAGCTGGGAACTGTGGAGGACTTAGAATGCACAGAAATCCCATCAGAGGAGGCTGAACCAAGAACCCCTACGCATCAGACGAGACAGGGTATTCCTGTACTGGCTGTGATGGTAATCGTGGGAGACAGCCTCCATAACTTTGCTGACGGCCTGGTGGTGGGGGCGGCCTTCTCCTCGTCCACCGAGACAGGCATGGCGACCACCGTGGCCATCCTCTGCCATGAAATCCCTCATGAAATGGGTGACTTTGCGGTGTTGCTAAGCTCAGGTCTCTCTGTGAGGAATGCAGTGATGATGAACCTCCTCAGTGCTCTGACGGCCTTCATCGGCCTCTACATCGGCCTCTTCGTCTCCTCGGAGCCAGAGGTCCAGCAGTGGATCTTCACCGTTACTGCGGGGATCTTCCTCTATCTGTCGCTGGTAGAGATGCTCCCAGAGATGAGTCGTGTGAAGACCAACAGGCCCTGTATCATGTTCCTCCTGCAGAACCTTGGTCTCCTAATGGGCTGGGCCTGTCTTCTGCTCCTTGCACTGTTTGAGCACAAACTTAAGTTTTgatgacaggacacacacacatcctactaTGGTATCTGCCATGCAAATATGTAATTGATGGCAATGTTGATGGTACTTTGTGGTCttgcttttttttgttgtcattttGACATCTTgtttattgattactgcattattTACTGACACACCATATGAAGACCGTGAACAGCACATTTAAAATGTCACAAGCAAGAAACATTTCACAAGTGACCGGATAATAGAGTGACGTGAATAGTAGCAGTGACGATGTGAATCAAATGTCATTTTAGATCCAGTGGTTACGCATAATGTGTTAGAGCTGGATGAATCCACTTTTGTATGAATCGGATGCCTAAATGTGATCTTTAGGACATGAACACATCTTCTGTGTGATGATTTATTTTTGTATGGCGTACTGTGTCACATAGGGCACATAGCTAGCTTGCAGTCTGTCTGTCACATCTATGTCTGGACATGATAGTGTCAGATGTCTAGTCTACAGTGCCAGACGAGATCTTTGTATACAGATACCTTGCTTGTATGTGTATATTTGCCATGAAATACAGTGtctccagaaagtattcagaccccttgactttttccacattttgttagtttagagccttttttctaaaattgattaaattgatggtttttatcatcaatctacagtcatggccaaaagttttgagaatgacccacatat

Function

NR:

description
PREDICTED: zinc transporter ZIP12-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562982.2 False 3362 mRNA 0.50 13 28826580 28837296
XM_021562983.2 False 2988 mRNA 0.50 13 28826580 28837296
XM_036944238.1 True 1599 mRNA 0.47 7 28833062 28837296

Neighbor

gene id symbol gene type direction distance location
LOC110489949 mrc1 coding upstream 14518 28795080 ~ 28812062 (+)
LOC110489948 mrc1 coding upstream 49491 28756788 ~ 28777089 (+)
LOC110490831 LOC106590071 coding upstream 85104 28731076 ~ 28741476 (+)
LOC100136716 LOC106590136 coding upstream 127624 28637747 ~ 28698956 (+)
LOC110489944 LOC106590138 coding upstream 214543 28580623 ~ 28612037 (+)
cacnb2a cacb2 coding downstream 13865 28851161 ~ 28963361 (+)
arl8 LOC106590131 coding downstream 146183 28983479 ~ 28996322 (+)
malrd1 malrd1 coding downstream 233058 29070354 ~ 29181202 (+)
plxdc2 LOC106578707 coding downstream 369964 29207260 ~ 29383520 (+)
zfand1 zfand1 coding downstream 568000 29405296 ~ 29415105 (+)
G1277284 NA non-coding upstream 3979 28822367 ~ 28822601 (+)
G1277283 NA non-coding upstream 4319 28821923 ~ 28822261 (+)
G1277281 NA non-coding upstream 7568 28818717 ~ 28819012 (+)
G1277277 NA non-coding upstream 13197 28813183 ~ 28813383 (+)
G1277276 NA non-coding upstream 13831 28812175 ~ 28812749 (+)
G1277212 NA non-coding downstream 86270 28923566 ~ 28966144 (+)
G1277396 NA non-coding downstream 178007 29015303 ~ 29015534 (+)
G1277397 NA non-coding downstream 178441 29015737 ~ 29015958 (+)
G1277400 NA non-coding downstream 180946 29018242 ~ 29018608 (+)
G1277408 NA non-coding downstream 189780 29027076 ~ 29027307 (+)
G1277279 NA other upstream 10770 28815366 ~ 28815810 (+)
G1277159 NA other upstream 202362 28574316 ~ 28624218 (+)
G1276733 NA other upstream 570174 28190186 ~ 28256406 (+)
G1276288 NA other upstream 972567 27853618 ~ 27854013 (+)
G1275572 NA other upstream 1724553 27101309 ~ 27102027 (+)
G1279349 NA other downstream 1465737 30303033 ~ 30303419 (+)
htr5ab htr5a other downstream 1558571 30395817 ~ 30416375 (+)
G1279833 NA other downstream 2106875 30944171 ~ 30947330 (+)
G1281462 NA other downstream 3158871 31996167 ~ 31996513 (+)
G1282302 NA other downstream 3850262 32687558 ~ 32698036 (+)

Expression


Co-expression Network