Item | Value |
---|---|
gene id | nsun6 |
gene name | nsun6 |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048579.1 |
NCBI id | CM023233.2 |
chromosome length | 81569517 |
location | 28967431 ~ 28976959 (-) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
symbol | description |
---|---|
nsun6 | Predicted to enable RNA binding activity and methyltransferase activity. Predicted to be involved in RNA methylation. Predicted to act upstream of or within methylation. Orthologous to human NSUN6 (NOP2/Sun RNA methyltransferase 6). |
description |
---|
putative methyltransferase NSUN6 |
id | name | namespace |
---|---|---|
GO:0032259 | methylation | biological_process |
GO:0008168 | methyltransferase activity | molecular_function |
GO:0003723 | RNA binding | molecular_function |
id | description |
---|---|
K21971 | NSUN6; methyltransferase NSUN6 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036944251.1 | False | 2007 | mRNA | 0.55 | 11 | 28967431 | 28976889 |
XM_036944245.1 | False | 2151 | mRNA | 0.54 | 12 | 28967431 | 28976894 |
XM_036944249.1 | False | 1906 | mRNA | 0.54 | 10 | 28967431 | 28976895 |
XM_036944247.1 | False | 2323 | mRNA | 0.51 | 10 | 28967431 | 28976896 |
XM_036944248.1 | False | 2320 | mRNA | 0.51 | 10 | 28967431 | 28976896 |
XM_036944246.1 | False | 2428 | mRNA | 0.52 | 11 | 28967431 | 28976897 |
XM_036944244.1 | False | 2221 | mRNA | 0.53 | 12 | 28967431 | 28976959 |
XM_036944250.1 | True | 1449 | mRNA | 0.51 | 9 | 28969811 | 28976899 |
28,960,000
28,962,000
28,964,000
28,966,000
28,968,000
28,970,000
28,972,000
28,974,000
28,976,000
28,978,000
28,980,000
28,982,000
NC_048579.1
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC118938886 | prex2 | coding | downstream | 148841 | 28817839 ~ 28818590 (-) |
LOC110489947 | LOC106590135 | coding | downstream | 243306 | 28701177 ~ 28724125 (-) |
LOC110489945 | clul1 | coding | downstream | 334911 | 28619838 ~ 28632520 (-) |
tyms | tyms | coding | downstream | 347680 | 28616467 ~ 28619751 (-) |
adcyap1a | paca | coding | downstream | 401890 | 28559194 ~ 28565541 (-) |
LOC118938887 | LOC106590130 | coding | upstream | 1642 | 28978601 ~ 28982268 (-) |
gimap4 | LOC106590126 | coding | upstream | 418999 | 29395958 ~ 29400497 (-) |
chmp4c | chmp4c | coding | upstream | 425327 | 29402286 ~ 29404544 (-) |
myrip | LOC106590123 | coding | upstream | 450076 | 29427035 ~ 29604679 (-) |
trnaa-ugc-67 | NA | coding | upstream | 450777 | 29427736 ~ 29427812 (-) |
G1277679 | NA | non-coding | downstream | 366 | 28966659 ~ 28967065 (-) |
G1277665 | NA | non-coding | downstream | 28615 | 28934611 ~ 28938816 (-) |
G1277558 | NA | non-coding | downstream | 55586 | 28840268 ~ 28911845 (-) |
G1277592 | NA | non-coding | downstream | 141383 | 28825818 ~ 28826048 (-) |
G1277590 | NA | non-coding | downstream | 144538 | 28822686 ~ 28822893 (-) |
G1277683 | NA | non-coding | upstream | 392 | 28977351 ~ 28977550 (-) |
G1277657 | NA | non-coding | upstream | 17459 | 28994418 ~ 28996282 (-) |
G1277695 | NA | non-coding | upstream | 21137 | 28998096 ~ 28998414 (-) |
G1277716 | NA | non-coding | upstream | 51823 | 29028782 ~ 29029091 (-) |
G1277719 | NA | non-coding | upstream | 54704 | 29031663 ~ 29031945 (-) |
G1276905 | NA | other | downstream | 701676 | 28261540 ~ 28265755 (-) |
G1276639 | NA | other | downstream | 876590 | 28090494 ~ 28090841 (-) |
G1276566 | NA | other | downstream | 1007997 | 27959052 ~ 27959434 (-) |
G1278860 | NA | other | upstream | 654066 | 29631025 ~ 29631768 (-) |
dlgap1b | LOC106590111 | other | upstream | 1002216 | 29979175 ~ 30253803 (-) |
G1281361 | NA | other | upstream | 2887275 | 31864234 ~ 31864636 (-) |
G1281363 | NA | other | upstream | 2888330 | 31865289 ~ 31866137 (-) |
G1282159 | LOC106590060 | other | upstream | 3498960 | 32475919 ~ 32478516 (-) |