plxdc2 (LOC106578707)


Basic Information

Item Value
gene id plxdc2
gene name LOC106578707
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 29207260 ~ 29383520 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562992.2
TATTAGACAATTCAATATCAGACATTAGCATAAGTCATTAGGAGCGCGCAAAGTGAGCGCACAAGCAGTTTATGACCGATAAGTAAAGCGTGTTTTCAACAGATTTTATGGTTgattgttaaaaaaaaagttgaatgaaagAAACTGCCTTAGAGTGTGATATGTCCCTGTTGTGTGTCACAAAAAAGGCCATTACTATGCAGTTATTGGTGGATACCATATTCCAGAATAGAGAATACGCGCATCAACTGCGAGTCTGGCACGGCATTGTTGTGGGACTGGTGGTTTGCACTGACTGTCAAAAGCAAAACACTATATTGGTGGTGGTGAATTGGTGTGACGAGGGAGCGGGGGCAGCTCACCATCCTCTCTGAGAACGCAACTCACATTACACCTCCTCTTTCCCGGGTAGGAATGAGACCTATGTTTGCGGAGCTGGGATGACCTCAATATTTTGAACCGTGTTGCTTGTTTTAGTGGTGGCTATggtcctctctcactcactcacacacacatacacacacaaacaaaacaccacACATCATATTTGCCGTTTGTAAACCAGCGAACAGCGCAGACAGGTTTTTCTCTGCAAAAGGCTGTCTTGCAGACTACACTCGAGAAGAGTTACGGAGTGGAGTCTACGTTTTGGACACCCTACGACTTTGGTGTATAGAAAATACATTCTAAAAAGAGGAGCAGTGCAATCAGTCGTGAATCTCGGATATGTCGGGGGTGAAAATATTCAACCTTGTTGTTGGAGTTGTTTTAGTTTTGCAGTCTCTTGGAAATGCGTTTCAAGTGCCTGGAGGGGACCTGACAAACGGGGTCTCCTACTCCTACCTGCAGGGGCAGCCGCTGGCTGAGGAGGACGTGGCAGTGGATGTGAAGTTGTACAGTCACCGGTGGAGGAGGTGGCTGTCCCCAGAACAACCACGTAACATGGACAATAACAGGGCCAGCCAGGACCAGGATCAGCAGGACCAAGACCAGAGTCAAGACCAGCCTGAGGGGAACTTCCCAGGCCTGCTCTCAGCAGAGGACAGCCAGGACACTGACAACAGCTCCCAGATAGAGGAGGACACAGATCACAACTACTACACATCAAAGACCTACGGCCCCACGGACCCCATCAGCAAGGACTTGTGGGTAAACGTTGACCAGATGGACAAGGAGAAGGTGAAGATCCATGGCATTTTGTCCAACACTCACAGGCAAGCTGCGAGAGTCAATCTATCCTTCGATTTCCCCTTTTATGGACATTTCCTGCGTGATCTCACCGTGGCAACTGGTGGGTTCATCTACACGGGTGATGTGGTCCACAGGATGCTGACGGCCACCCAGTACATCGCCCCCCTCATGGCCAACTTTGATCCCAGTGTCTCCAGGAACTCAACCGTCATCTACTTTGACAATGGCACTGCTCTGGTAGTCCAGTGGGACCATGTCCACCTGCAGGACAGCTACAACCTGGGCAGCTTCACCTTCCAGGCCACACTGCACAGTGACGGCAGGATCGTCTTCGCCTACAAagagaTCCCCATCGAGGTGGCTCAGATCAGCTCTGTCAATCACCCGGTGAAGGTGGGCCTCTCCGATGCCTTTGTGGTGGTCCACAGGATCCAACAGATTCCCAATGTTCGTAGGAGAACGATCTATGAGTACCATCGCGTGGAGCTGACGAAGACCAAAATCACCAACTCCACAGCAGTGGAAATGATGCCTTTACCGACATGTCTCCAGTTCACCAGCTGTGGCAGCTGCATCTCCTCCCAGATCAACTTCAACTGCAGCTGGTGCCACCGCCTTCGCAGGTGTTCCAGTGGGTTTGACCGCCATCGGCAGGACTGGGTGGATAACAGCTGTCCTGATGAGACCAAGGACAAAAGCTGTGATATCATCAACACCACACAACTCTATCCGTTCACCACCACGTTAGTTGCCAAGACAACAGGCCGGAGCAGAGGAGAGACCACCACAGCCGGAGCCTCTTTGTCTACGTCCCTCTCCCCGACCAGCGTCCCCACTGAAGATGACACCAAGATTGCTCTGCATCTCAAAGACAATGGAGCGATGCCAAAGGAGAGTTCTGCAGAGCGGAAGGGCACACACCCCCTGCACACTGGACTGATCCTGGGCATCCTCATGGTCATGCTCATCATGGCTGCCACAGTCCTGGTCACCgtctacatctaccatcacccCACCTCGGCCGCAAGCCTATTCTTCATCGAGaGACGTCCCAGCAGGTGGCCGGCCATGAAGTTCCGCCGAGGGTCCGGTCACCCGGCCTATGCGGAGGTGGAGCCCGTGGGCCAGGAGAAAGAGGGCTTCATCGAGTCTGAGCAGTGCTAAAGGGcatcccccccaccacacacacacacacaccccgccgTGTCGCTCTCCCCCCTCCCGTATTGCCCCCCTTGCGCCCGCTCCACAGGGACTGACACACCAGTATTGCCCCAGAAACAGGCCTTCCGAATCTGCCATACCCATGGCGACTGATTGACGCTGGTCTCTTGTTTTGTTGATTAAAACACTCACTGTCAAGATTGTAAACTTAAATTAGAAAATTGTGGAGGTGTTAATTTGAAAACCCCACACTCTTGCTGGTTGTTGAAGAGTGGGCCTTGTGTTTGGTGGACTACCATGGTGGACTACCATCTTCAACCCTAGCTTGTCCAACAGAGAGCTGATCTGAGAGCTTAGGGAGGGTCACTGCCAGAGGGACTGTGCTGTAGGTAAACCTTGAAAACGGATCTCAAGTCAGCTCTTCGTCCAAGTCCTCAAAGTCTCACACTCGTGCTGGTtgaagtgactgactgactgacttgttgGGGACAGAGGGAAAGTAGCCacgtttatacctggtgctaacatgcgtcctttgtcctgatcttgtccacattttGATCGTGCCAACATTTTAAGACGTGTAGATGATtaaaagacacattgtgatcggattgtgatcagatcttcctgaccacctccGGAGGTAGTCAAGCACGCATTGTGTCTGGATATCGATTGAGTGTAAACAGATGTGGATGGTCAAACCATTTAAATCATCATAATACCGGCCTTTAAAACAATTTACAGGTATCAAAATTGACTTAGGGGCTTCAGTAACTGtcttaaaacaaatcatccatATTATTTTAAAGAATATCTGTCAAATAATTTGCATACAGGGAGGCATGAGCTAATCTGGTCACAATGCGGGCACAGTGGACGGATaagagacacattttaatacTATGTGTGGAGGCGAAAAAACCTTGATCGGATAGTGATTGGATCATATTGATCAGATCACGAAACTCACATGTTAGCACAAGGTGTAAACTAGGCTATTGAGTGGGTTGTACAGAGTAACTGTGATGCATTGGGGGAGTAGGTGGAATTATACAATATATTTTTCAGAAACAATACTGAGTATGTGAACAGAGATCTCGACTTTAAATGTTGGTGAGGTTATATAGACTTTACATCCTTTTGGGATTTTGCAAATGTACTTTTTTCGTATTTTGTTTCTGTTGCTTTTTTTACTTGGGTTTTCTCATAATCAGTGTGGGGGGGGTTTGTCTTGCTTCCCACTACCACAATAAGGCTTCTTTACCATAGCTTTTACTCCATAGTGTGGTTCAATAGTGTGATATGCTCTTGCTACTGCCACTCATCCCACCAAGGAGTAGCAGTCTGCAAGTCTGGAAATGTTCAGTTCTGTCTCTTTTGTTCAGCTCTGGCatctcttttttttctcattttgtcaaaGATTGTGTGGTTTTTGCTTACTGAGAGAACCTCTGTTTTCCACGATGGGGTGATGGGCACACTCTTCTCTTCTCATTGGTTTGATTGCTCCCTtattaacatactgtatgttgttgttattttttttacagtgatTTCAGTACTGCCGTGCCATTATTTCCTTGACTGGAGTCTGCTCAAACATTTTTTGCACAAAAGGTTTTTCCATGCACATATATCTTTAGTTCATTTGACTTGTGGTACTAATGCAAAATTGCAAGACAGGCGCTTGtgactgtgtgtggttgtgtgtatgcATGGTCTATATGTGAGTGAttgagtgtttgtgtgcgtgttgtgtttgtgtgattAGATATCCACCTGCTTGAAGGTGGGTCAGTTTGAGCTGGTTCTGTGTAAttgatgctgattggttgacCTGAGGTACATTAACAAGATGTTATGAGACGCGTTGGCGATACATTAAAAAACGTACCTGGCATGAGTTTGCCTGGGTTTTGAATTGTGGTATACAGTGTGGTTTTCAATAGCAGTTTGACCTGCTGCTGTTTCAACCTGAAGAAGAATCTAAATTGTACAGGACTGGAGGATTCGTGTTATATGGAGTGAGATATCTGCCGAAACGTTAAACAAACGTAATGTTAGAGtcaaaaatgcatttttttttaggaAATCTCTAACCTCCATACTGTTCCAAGTCAATATGAATGGCTGACTAGTACATGTCATTTAACCCTAGCATAGCAATGTATATACATGGGCCTACACCTTTGTAGATTGACTCTCAAAACATTTGCAGATTCGGGTTATTAATGAAAAAGCATACATATGATATATTATATGActattttgtttttctttttgAGTGGCCTTCTCAATTATgattatttttttcaaatgtgAATGAATGTGTCAATCATTGCATAACTGCTGTTGCTGGTCGATTATAACGGACAAGGCTTTCATACATTGATCAAATCAAACAAAATTCTGATTTGTATACTGTACCAAGACTGACCGAACAAATACAATGAAATGTATTTCACCATCATTTGTAGATTGAGCTGGGAAATATGCCTTGGGTTACAATGGTACATACACACGGTACTATTTAGAATTACAAATAAATAGattatacaaaatatatatatctcaAATGTGCAATATAACATTCATCAAACTTCATTatgcattttttaatttttttttaaatgtagtgaTAATGATTGGGAATTATTTAGCGTTACATCATTGATGATTAATTAATCCCCCATTGCACTGAGACCAAAGACCCATCCCAATGTTTATTTTGTCAACATACTACGGCGTTCTCTACCGTGGAGACCTCTGTGTCCCATGTTCACAATCTCTCACTTCATTCCCCACCAAGTCCAAATCTATCTCGCCCCTTGACGTTGAATCAAACCACTATTTTCATATTGCACTCCCACTTTGAGCACACCACCACAGGCCTACATTCAACTCAAAACACACGCAGagacataggcacacacacacacacacacacgcgcaaatGCTCGTATAGGATGATGAATCAGCTGCGCCAGAACTCAACACAACTCCATTCATAACAAGTCCATCTACAGAGGTGGAGTTACTGAGCACAGCAACCATCTACTGAACATTACGCTTATTTTCCAAAACAGTGTTAAAGAGTCGATGGGctgggggggtgaggggggggcACACGTGACTACCCTCACAGATTTTCCATGCCTACAGCCAAATACCATAGTCCCAAATgcttccctattccctacaaagtgcactagacagggaatagggtgccatttgggacgcagacactgCTTTGAGATTTGCTCAGTCTTCCCTTGTGGAGAAATGCTGTGTTGTTTGAGCTCTCTGGGACATCTGCTTGTTCTGCTGCCACCTAAAACTGCAAATGTTTTTATAACCACTCAAACGTATGTCTCAAATGGCATTCTatcccctatttagtgcactactttggaccaggacccatagggctctagtgaAAAGCAGTGTACTTTAAGGGAATAGGTtggcatttgggacgcaggcgAAGTGGCCCGAGGATAGAGCTGATAGAGGGGTTTGAGTTTTGTAAACAAACTTGGAGGATGAAGTGGGGGGCATTCAGTAGGCCTAAGTGTTCAGTCTGCGTTAGACAGTGATTGCAACACTTTCAAACTAGTTGTTTGGGAGAAGAAAGCATATTCAAGTCACTCCAGTAATCACTGAATGGCCTGATTGCTTTCAACCAACATTCTCATAACATGCTTTTTAGAATAAGAAAAGCAACATTttctgcgtttagacaggcagaccaattctgatcttttttccactaattggtctaaTGACTTAAAACGAACAATGTAGCTCATACAGGTACAAGTCTTGTTCCACGGTGATTGCCTGAACTCAAAATGGAGGACGGAGGAAGCTGTGACCCTATGTTTTGTTTTCCGATCTCATTACAAAACTCTTTAGGACATGACAACAAGAGACTCAAAAATCACACAGTACCCTAGCTGTCTGTAATTTCTGTAACTACTGTCATTTTGATTACATTTGAAATAAAGAATGTTGTTTAAA
>TU1459503
TTTGAATTGTGGTATACAGTGTGGTTTTCAATAGCAGTTTGACCTGCTGCTGTTTCAACCTGAAGAAGAATCTAAATTGTACAGGACTGGAGGATTCGTGTTATATGGAGTGAGATATCTGCCGAAACGTTAAACAAACGTAATGTTAGAGtcaaaaatgcatttttttttaggaAATCTCTAACCTCCATACTGTTCCAAGTCAATATGAATGGCTGACTAGTACATGTCATTTAACCCTAGCATAGCAATGTATATACATGGGCCTACACCTTTGTAGATTGACTCTCAAAACATTTGCAGATTCGGGTTATTAATGAAAAAGCATACATATGATATATTATATGActattttgtttttctttttgAGTGGCCTTCTCAATTATgattatttttttcaaatgtgAATGAATGTGTCAATCATTGCATAACTGCTGTTGCTGGTCGATTATAACGGACAAGGCTTTCATACATTGATCAAATCAAACAAAATTCTGATTTGTATACTGTACCAAGACTGACCGAACAAATACAATGAAATGTATTTCACCATCATTTGTAGATTGAGCTGGGAAATATGCCTTGGGTTACAATGGTACATACACACGGTACTATTTAGAATTACAAATAAATAGattatacaaaatatatatatctcaAATGTGCAATATAACATTCATCAAACTTCATTatgcattttttaatttttttttaaatgtagtgaTAATGATTGGGAATTATTTAGCGTTACATCATTGATGATTAATTAATCCCCCATTGCACTGAGACCAAAGACCCATCCCAATGTTTATTTTGTCAACATACTACGGCGTTCTCTACCGTGGAGACGTTCCACGGTGATTGCCTGAACTCAAAATGGAGGACGGAGGAAGCTGTGACCCTATGTTTTGTTTTCCGATCTCATTACAAAACTCTTTAGGACATGACAACAAGAGACTCAAAAATCACACAGTACCCTAGCTGTCTGTAATTTCTGTAACTACTGTCATTTTGATTACATTTGAAATAAAGAA

Function

NR:

description
PREDICTED: plexin domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562992.2 False 6381 mRNA 0.45 14 29207260 29383520
TU1459503 True 1034 lncRNA 0.34 2 29381416 29383509

Neighbor

gene id symbol gene type direction distance location
malrd1 malrd1 coding upstream 26058 29070354 ~ 29181202 (+)
arl8 LOC106590131 coding upstream 210938 28983479 ~ 28996322 (+)
cacnb2a cacb2 coding upstream 243899 28851161 ~ 28963361 (+)
LOC110489950 LOC106590132 coding upstream 369964 28826580 ~ 28837296 (+)
LOC110489949 mrc1 coding upstream 395198 28795080 ~ 28812062 (+)
zfand1 zfand1 coding downstream 21776 29405296 ~ 29415105 (+)
prlh2 crfa coding downstream 38874 29422394 ~ 29426818 (+)
si:dkey-12l12.1 LOC106590121 coding downstream 221135 29604542 ~ 29632819 (+)
LOC110489961 LOC106590122 coding downstream 229111 29612631 ~ 29614518 (+)
ackr4b LOC106590119 coding downstream 274448 29657968 ~ 29664921 (+)
G1277920 NA non-coding upstream 11177 29195825 ~ 29196083 (+)
G1277917 NA non-coding upstream 12731 29194320 ~ 29194529 (+)
G1277793 NA non-coding upstream 67948 29138385 ~ 29139312 (+)
G1277761 NA non-coding upstream 121082 29085393 ~ 29086178 (+)
G1277751 NA non-coding upstream 140761 29066275 ~ 29066499 (+)
G1278114 NA non-coding downstream 122581 29506101 ~ 29506490 (+)
G1278115 NA non-coding downstream 123132 29506652 ~ 29506857 (+)
G1278128 NA non-coding downstream 140956 29524476 ~ 29524795 (+)
G1278129 NA non-coding downstream 141896 29525416 ~ 29525728 (+)
G1278168 NA non-coding downstream 214090 29597610 ~ 29597889 (+)
G1277279 NA other upstream 391450 28815366 ~ 28815810 (+)
G1277159 NA other upstream 583042 28574316 ~ 28624218 (+)
G1276733 NA other upstream 950854 28190186 ~ 28256406 (+)
G1276288 NA other upstream 1353247 27853618 ~ 27854013 (+)
G1275572 NA other upstream 2105233 27101309 ~ 27102027 (+)
G1279349 NA other downstream 919513 30303033 ~ 30303419 (+)
htr5ab htr5a other downstream 1012347 30395817 ~ 30416375 (+)
G1279833 NA other downstream 1560651 30944171 ~ 30947330 (+)
G1281462 NA other downstream 2612647 31996167 ~ 31996513 (+)
G1282302 NA other downstream 3304038 32687558 ~ 32698036 (+)
G1277993 LOC100136012 non-coding upstream 71293 29297563 ~ 29310123 (+)

Expression


Co-expression Network