zfand1 (zfand1)


Basic Information

Item Value
gene id zfand1
gene name zfand1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 29405296 ~ 29415105 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562995.2
aaatatctgtctcattgttacATCTGTGGCCAAAGTTGAAAAGTTGACGCAAGAAGAATCATGGCTGAACTAGACATTGGGAAACATTGTAACATAAAGTCCTGCCATCAGACAGATTTTCTACCATTTATTTGTGATGCCTGCAGGGGTGTTTTCTGCCTTGAACACAGAAGTCGAGATTTGCACGCTTGTCCTGTGGTGGACGTTAAAAAAGAAGTCCAGATATCTGGTGGCTGTACGAGATACCCATGCACATTTGAAGACTGCAAAGGGAAAGAACTGTTGCCAGTCATTTGTCCACACTGTCAGAAACATTTCTGTTTGGCCCATCGTCACCAAGATGACCACAAGTGTGATAAACTGGAAACGCCCAAGCCTCGCATGGCTGCCACACAAGCGCTCGTGCAGAAGATAGTAGAGTCCAAGAAGGCTTTGCCTCCGAGGAAAGGTCGCAAGGGAGTAAAGAACGCTGCAACAGCAGCCAAGGTGACTTTGATGAAACTAAAGCTTCATGCTGAGGGAGACAACGGACTGCCACAGACAGAGAGGACCTATTTCAATGTCTTCCTTCCCAGAGAGGGCAAAGACTCCAGCCTGCCTATGTTTTTCTGTTCCAAGTGGAGTGTGGGGAAAGTAGTGGACTACGCCGCCTCACTGGCCAGCctcaagaacaacaacaacgtaCTAACGGCTAAGAAACTGCGGCTGTGCCACCCCCAGACGGGCGAAGCTCTCAAGATGGACGACACTCTTCTCTCCATGCTGGCTCACCCAGACTCGCCCCTCTACAACGGGGGCGACGTGATCCTTGAGTACCTGGACAACGACTGCTCAGGCCTGGAGGACACCTCTGCCTACATCCCACAGTCCTGACTCGCACACGACACCGATGGTCTAAATCATTTTGAGTCGTTGGAATACTATGAacatgtgtttttttatttaggATATTAAAGTTTTGATTTACGGCA
>XM_036944253.1
GACGCAAGAAGAATCATGGCTGAACTAGACATTGGGAAACATTATTTTCTACCATTTATTTGTGATGCCTGCAGGGGTGTTTTCTGCCTTGAACACAGAAGTCGAGATTTGCACGCTTGTCCTGTGGTGGACGTTAAAAAAGAAGTCCAGATATCTGGTGGCTGTACGAGATACCCATGCACATTTGAAGACTGCAAAGGGAAAGAACTGTTGCCAGTCATTTGTCCACACTGTCAGAAACATTTCTGTTTGGCCCATCGTCACCAAGATGACCACAAGTGTGATAAACTGGAAACGCCCAAGCCTCGCATGGCTGCCACACAAGCGCTCGTGCAGAAGATAGTAGAGTCCAAGAAGGCTTTGCCTCCGAGGAAAGGTCGCAAGGGAGTAAAGAACGCTGCAACAGCAGCCAAGGTGACTTTGATGAAACTAAAGCTTCATGCTGAGGGAGACAACGGACTGCCACAGACAGAGAGGACCTATTTCAATGTCTTCCTTCCCAGAGAGGGCAAAGACTCCAGCCTGCCTATGTTTTTCTGTTCCAAGTGGAGTGTGGGGAAAGTAGTGGACTACGCCGCCTCACTGGCCAGCctcaagaacaacaacaacgtaCTAACGGCTAAGAAACTGCGGCTGTGCCACCCCCAGACGGGCGAAGCTCTCAAGATGGACGACACTCTTCTCTCCATGCTGGCTCACCCAGACTCGCCCCTCTACAACGGGGGCGACGTGATCCTTGAGTACCTGGACAACGACTGCTCAGGCCTGGAGGACACCTCTGCCTACATCCCACAGTCCTGACTCGCACACGACACCGATGGTCTAAATCATTTTGAGTCGTTGGAATACTATGAacatgtgtttttttatttaggATATTAAAGTTTTGATTTACGGCA
>XM_021562996.2
taagcagaccagacccagctgctaatgCATTGGTGCATACTGAAACATGTTTTAGTATTAAACTGTCTGGATTTTCTACCATTTATTTGTGATGCCTGCAGGGGTGTTTTCTGCCTTGAACACAGAAGTCGAGATTTGCACGCTTGTCCTGTGGTGGACGTTAAAAAAGAAGTCCAGATATCTGGTGGCTGTACGAGATACCCATGCACATTTGAAGACTGCAAAGGGAAAGAACTGTTGCCAGTCATTTGTCCACACTGTCAGAAACATTTCTGTTTGGCCCATCGTCACCAAGATGACCACAAGTGTGATAAACTGGAAACGCCCAAGCCTCGCATGGCTGCCACACAAGCGCTCGTGCAGAAGATAGTAGAGTCCAAGAAGGCTTTGCCTCCGAGGAAAGGTCGCAAGGGAGTAAAGAACGCTGCAACAGCAGCCAAGGTGACTTTGATGAAACTAAAGCTTCATGCTGAGGGAGACAACGGACTGCCACAGACAGAGAGGACCTATTTCAATGTCTTCCTTCCCAGAGAGGGCAAAGACTCCAGCCTGCCTATGTTTTTCTGTTCCAAGTGGAGTGTGGGGAAAGTAGTGGACTACGCCGCCTCACTGGCCAGCctcaagaacaacaacaacgtaCTAACGGCTAAGAAACTGCGGCTGTGCCACCCCCAGACGGGCGAAGCTCTCAAGATGGACGACACTCTTCTCTCCATGCTGGCTCACCCAGACTCGCCCCTCTACAACGGGGGCGACGTGATCCTTGAGTACCTGGACAACGACTGCTCAGGCCTGGAGGACACCTCTGCCTACATCCCACAGTCCTGACTCGCACACGACACCGATGGTCTAAATCATTTTGAGTCGTTGGAATACTATGAacatgtgtttttttatttaggATATTAAAGTTTTGATTTACGGCA

Function

symbol description
zfand1 Predicted to enable zinc ion binding activity. Predicted to be involved in stress granule disassembly. Predicted to be active in cytoplasmic stress granule. Orthologous to human ZFAND1 (zinc finger AN1-type containing 1).

NR:

description
AN1-type zinc finger protein 1 isoform X2

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24684 ZFAND1; AN1-type zinc finger protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562995.2 False 971 mRNA 0.48 8 29405296 29415105
XM_036944253.1 False 899 mRNA 0.49 8 29405341 29415105
XM_021562996.2 True 926 mRNA 0.49 8 29405877 29415105

Neighbor

gene id symbol gene type direction distance location
plxdc2 LOC106578707 coding upstream 21776 29207260 ~ 29383520 (+)
malrd1 malrd1 coding upstream 224094 29070354 ~ 29181202 (+)
arl8 LOC106590131 coding upstream 408974 28983479 ~ 28996322 (+)
cacnb2a cacb2 coding upstream 441935 28851161 ~ 28963361 (+)
LOC110489950 LOC106590132 coding upstream 568000 28826580 ~ 28837296 (+)
prlh2 crfa coding downstream 7289 29422394 ~ 29426818 (+)
si:dkey-12l12.1 LOC106590121 coding downstream 189550 29604542 ~ 29632819 (+)
LOC110489961 LOC106590122 coding downstream 197526 29612631 ~ 29614518 (+)
ackr4b LOC106590119 coding downstream 242863 29657968 ~ 29664921 (+)
LOC110489968 LOC106590118 coding downstream 274612 29689717 ~ 29695951 (+)
G1277993 LOC100136012 non-coding upstream 95173 29297563 ~ 29310123 (+)
G1277920 NA non-coding upstream 209213 29195825 ~ 29196083 (+)
G1277917 NA non-coding upstream 210767 29194320 ~ 29194529 (+)
G1277793 NA non-coding upstream 265984 29138385 ~ 29139312 (+)
G1278114 NA non-coding downstream 90996 29506101 ~ 29506490 (+)
G1278115 NA non-coding downstream 91547 29506652 ~ 29506857 (+)
G1278128 NA non-coding downstream 109371 29524476 ~ 29524795 (+)
G1278129 NA non-coding downstream 110311 29525416 ~ 29525728 (+)
G1278168 NA non-coding downstream 182505 29597610 ~ 29597889 (+)
G1277279 NA other upstream 589486 28815366 ~ 28815810 (+)
G1277159 NA other upstream 781078 28574316 ~ 28624218 (+)
G1276733 NA other upstream 1148890 28190186 ~ 28256406 (+)
G1276288 NA other upstream 1551283 27853618 ~ 27854013 (+)
G1275572 NA other upstream 2303269 27101309 ~ 27102027 (+)
G1279349 NA other downstream 887928 30303033 ~ 30303419 (+)
htr5ab htr5a other downstream 980762 30395817 ~ 30416375 (+)
G1279833 NA other downstream 1529066 30944171 ~ 30947330 (+)
G1281462 NA other downstream 2581062 31996167 ~ 31996513 (+)
G1282302 NA other downstream 3272453 32687558 ~ 32698036 (+)

Expression


Co-expression Network