tgif1 (LOC106590112)


Basic Information

Item Value
gene id tgif1
gene name LOC106590112
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 29969944 ~ 29976086 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563014.2
TCCGAAATAGCCTACTAATGAGAAGTAACCTAATGCTACGGTTGTTGTTTTGAACATTAGGCACTAAAACTGCCGCAAGATCTGCAATGCCATTCGCTTCCATACGTATTTAAATTATACTCCTACATTTGTAACGTAAAAGTAGAATATATTCTAGCCGTTGATCGGTGAGATCGTGTTTACGTCGATGCAAAAGCCATGCTGTCAGAGATTTTGGCTCTTTCCTCTAAAGTGGGAGGATCTTTGTGCTTTTGAGTCACGCAGCTGTCAAAGATAGCTGTCACCCAGTTTCATGATCAAACACACATTGAATGAGAAAGGTTTCGCCAAGTCGAGCAGCGGATTTCAGGTAGCTTACTCCTGGTTAAAGTACTACGTCTCAAACAAATGAAAAAGCCGACGAACGGTTCTACAAACGAAAATAAATCAATGAACAAAACCATTTGGAATATACGTGTGGAATATCCCGAGAAAAAGATTTACCGCTAAAGGAATAGAATTCGAGAGAAAAAAAGGCTACTGCGCTCCTCTCGTGGCCAACGTGAAAAGGGGATTTTTGACGGACATGAAGACAAAAAAGGGCATGATGACGTTATCTGGTAGTGAGACGGACGACGAGGACAGCATGGATGCCCCCCTGGACCTGTCATCCAGCACAGGAGGTAGCAGTGGGAAGAGGAAGAGGCGCGGGAATCTACCCAAGGAGTCGGTGCAGATCCTCAGGGACTGGCTCTACGAGCATCGCTACAACGCTTACCCCTCTGAACAGGAGAAATCCCTGCTCTCAAAGCAGACTCAGCTCTCCACACTACAGGTGTGCAACTGGTTCATCAACGCGCGTCGTCGGCTCCTCCCGGAGATGCTGCGGAAAGACGGTAAAGACCCCAACCAGTTCACCATCTCCCGGAAGGGCCGCAAGGGAGACGACGGGGGCTTCTCTGAATCCAGCTCCCAGTCACCCAAGCACGCCACAGCCGCCACGGGCCCCGAGGACAGCTACGACCAGCGGGCACTGCACCCCTCAAGCTTCGAGGCAGGCCTCCCTAGCCCCAGCGTCCTGCAGAAGGCCATATCATCCCCTAAGatgtctccttcctcctccccggGGCCCGCCACCACAGTGCCCCGCCGGCCCTCCGTCATCCGTCACACCACTGTCAACTCCACTGTGATGCAGAAGCAGggctccagcctccctccctcctccctctcctacttCCTCTCCAGCAGTAAAACAGACCACAGTAGGGCTGCAGAGCTGCTGCGTTCCACCACAGAGGCTCTGGTGCTCTTCAGATGCCAGGAGGAAGGGCTGGGAGCCCCGGCAGTGACCACCACCACAGAGGGTAACCTGAGCCCCCAGAGTGGGCTCTTCAatacccctccccccacccctccagaCCTCACCCAGGACTTCAGCGGCTTCCAGCTCCTAGTGGATGTGGCCCTCAAGCGGGCGGCAGAGATGGAGCTGCAGGCGAAACAACTGGTGTCTTAAAGAGAAAGTGGAGGGGAAGATGTTGTCCCTAACGGAACTCCTAGCATGAGTTTAGTGGCTGCGTAACAAACACAAAAAGCCTGATTATTTCTATTTTTGGTATACAAATCATAAATGAGGATTGTTTTTGTACAAAACTGTATCAAGGTGCCTTGGCTGTTAgttattttttactttgtcataTATGCGTGTATGTAAGTATCTGTGTGTCTTTTGCAGACGGGACCAAAACAAATATTGACAGACACAAAAAACCCACTTTCTGTCTTAACTTTTTCCTATGGATTTTAGTAGAGCAAGCAAGGCATGAGGGCGTACAAGTGTTCTGCGGATGAGACAAGAGGGTGgttctcttctcctccacacagatCCAATCCCCCGTGATAGGATATGTAGTTTCCAGATGTGTTTTTACATTTCAGAGATAAGTTTGCGATGGCTCCCACTCGGACGTTCGCACAATAGGGCCGAGTTAGGGTCCTCATCTCAGTGTCTTAAAGCATACTTTGTTCTTGGCATCGATGATTGATCAACGTTATCACTACTGTAGTAATAAGTGTTCCGTGTTTTTTTTCATGATAAGGTTATAGTTTTCTTATCCTTCATTTGATATTTTAAAAGAAAGTAAACCTCTCTTTTTGGTTTTGATAAAGCGGTTTCCTATACTGCTTTATCAATATCAGATGAACAATGTAGCAGGTTCCTAGTCCGAGCCTTCCTCCTCACTGCGTGGctaccccaaatggcaccctattcccgattttatagtgcactatatcgggaatagggtacaatttgggacATGCCACGAGTAGCGACGGCCAGTGAATTTCAATTGTAAGAAAAACACTAAGATTTTGTTTTTTCATTTGTGATGTCACCAGCAGCGGGAACAGTAGAGCATTTTCTAAATCACCAAAAAGCGTTTTATGTACAAAAAAAGGACCATGTTTATGTATAGCTAATGTGACACAATGCCCAATGATGTGATTTCTTTTCATACTGTGCAATGTTTGTGGCAAATAGGGGTCACACATGGGATTTAAATAAAGTTTTGTTTTCTACATA

Function

NR:

description
homeobox protein AKR-like

GO:

id name namespace
GO:0050794 regulation of cellular process biological_process
GO:0007420 brain development biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K19383 TGIF1; homeobox protein TGIF1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563014.2 True 2566 mRNA 0.47 3 29969944 29976086

Neighbor

gene id symbol gene type direction distance location
LOC110489968 LOC106590118 coding upstream 273993 29689717 ~ 29695951 (+)
ackr4b LOC106590119 coding upstream 305023 29657968 ~ 29664921 (+)
si:dkey-12l12.1 LOC106590121 coding upstream 337125 29604542 ~ 29632819 (+)
LOC110489961 LOC106590122 coding upstream 355426 29612631 ~ 29614518 (+)
prlh2 crfa coding upstream 543126 29422394 ~ 29426818 (+)
LOC110489977 LOC106590110 coding downstream 353724 30329810 ~ 30345566 (+)
htr5ab htr5a coding downstream 419731 30395817 ~ 30416375 (+)
insig1 insig1 coding downstream 505931 30482017 ~ 30496207 (+)
en2a en2 coding downstream 541910 30517996 ~ 30521339 (+)
LOC118938958 NA coding downstream 557010 30533096 ~ 30533257 (+)
G1278401 LOC106590113 non-coding upstream 4279 29948758 ~ 29965665 (+)
G1278396 NA non-coding upstream 37236 29932479 ~ 29932708 (+)
G1278389 NA non-coding upstream 43500 29926171 ~ 29926444 (+)
G1278369 NA non-coding upstream 61758 29907958 ~ 29908186 (+)
G1278365 NA non-coding upstream 72447 29897134 ~ 29897497 (+)
G1278371 NA non-coding downstream 1245 29977331 ~ 29979103 (+)
G1278468 NA non-coding downstream 80415 30056501 ~ 30069993 (+)
G1278471 NA non-coding downstream 83465 30059551 ~ 30059969 (+)
G1278514 NA non-coding downstream 136233 30112319 ~ 30114236 (+)
G1279348 NA non-coding downstream 326586 30302672 ~ 30302880 (+)
G1277279 NA other upstream 1154134 28815366 ~ 28815810 (+)
G1277159 NA other upstream 1345726 28574316 ~ 28624218 (+)
G1276733 NA other upstream 1713538 28190186 ~ 28256406 (+)
G1276288 NA other upstream 2115931 27853618 ~ 27854013 (+)
G1275572 NA other upstream 2867917 27101309 ~ 27102027 (+)
G1279349 NA other downstream 326947 30303033 ~ 30303419 (+)
G1279833 NA other downstream 968085 30944171 ~ 30947330 (+)
G1281462 NA other downstream 2020081 31996167 ~ 31996513 (+)
G1282302 NA other downstream 2711472 32687558 ~ 32698036 (+)

Expression


Co-expression Network