LOC110489977 (LOC106590110)


Basic Information

Item Value
gene id LOC110489977
gene name LOC106590110
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 30329810 ~ 30345566 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563017.2
CCGATCTATCTATGATTTGTGGAGATAGCACTGAGTAGCAGACGGACCGTCCTGAATACGGTGAACCTAATGCGTGCTGCGTCCACCTACTCTCCTGTGTGGGAGCAACTGGGGACAATCTTTTGAATACTTTTTCCACAGAACATCCTGGAAGGTGTATCCTAGACGGGATTAACCGTATTTCAGGGCCACCACAGTAAGATACTGACCATGGGAGATTGCATCTCAGTCCGTGCTCTGCTAATGCTTCTGGCCCTAGTCAGCTATCTAATTGCACTGACATTCAACATATTGGCTCTATTTGGGCCCTGGACAGGTGCTTTCATGCAAACCACACAGTATGTACTGAGCAAGTCCACAACGCACCTAACCCCAGATAGATGGGTACTCTTTCTATGGGATGTCCTTAACATCTGGTTGATTGGCATGTTCATCTATCTGATACACAATCTCCGTAGAAGGGAAGCTTATACATGGATGTACACCACTCCTGCTGTCCTGCCCTATGGATTCTACTTGTCCTGGATCGTAAATAGCATGTTGAATATGGCATGGTTATTTCTGTACGACAAAGACTTCTGTGTGTGTCATAGAAAGATGGTGCCAACGCTCCTGATCACAGCATTACAGGCCATCTCAAATTGCGTGATTATCATGTTCTCCTGCTGCGGACTGGTCGTCTATGGAGCGTGGCTCCACAAATATCACAACAATGATCTCTGGCTCATTCGAATATTGGTGCAAAACGGAGTGGCTTTGTATGCAACATGGTGGGCTGTGGCTACCTTTTTACACTTGACCGTTGTTTTAGACCATCAAACCCCAATACCCAAGACAGACGCTGCCATAATGGTACTAGTGCTGCTCCAATTGGGACTCATAGGATGGTTTGTCATAGAGAACTGGTACCTGGATAAGCACGTGCGCTACATCCTCACAGTGTACCCTGTGGTGATCCTGGTGTTGGCAGCGAGTGTGGCCAATCCAGCCACGCCCGGTACCCACATAGACATCATGTCTGCCGTCATCTTGGCCATAACCAGTGTCATATTTATTGTACGCATCATCATGGTGTTATGGAAGCACAAGCATCAACCACTTTACGGAGAAGAGGAGCTCAGGTCACCGGTGGACATTGCCAGGACACAGAAGCTCATCTTCATGTGAGGGGAGACAGCTGCTGTGGATATATGTAGGCCCCTGTTGTTTTCCTTAACATTTAATGGCTGAGACCGATGTGACCAAATCCTCCCTATGTCCACAGCACATGTCGATGGAGATTTGGTACTTCGCTACAGGCTTTCCACGTGATGGGTGGGGCCTCTGCACTAGCCAATCCAATGCTAATGTCTTTCTAAGCTAATTAAACCATATCAATTACTGTGTGTCAAAACAATGAACCGAAATGCTCTCATGCTGTCAACACTAAAGCGATATTAATATGATcatgtttttattgttttgtcCATCTTTTAGTACCACCACGTTGTTTTTGTACCCTATTCTTGTCTACCTTTGTGTTTCTACCTTCTCTTTGAACTTCTTTGGTCCTAGGGATTCCCACAGTGAAAAAGCTGAAATTCACTACATTCCTTCaacagaaatggtttgctcagtgggaaatgaatatccaactagtcagtgacaactgtgtggagtttggaATAACTATGTGAGCGTATTGCAGTATCGCAGGCACtgtgtcctgggatttcctatgatcttctatgtagaataATCCCTTAACATTCTAACGACTCTTGTGTAGCTTGTGAGTGGCATAGAGCAAAATGCATATGCGCGTTCGCGAGCGTCATAGTGGGGTCTTAATAGTTTGCAGCTCATTCGGACTTTGCAGACATTTTTGTGAGAAGGGTCGTTTTCCTGGATCCgcccttgtctcacaaacactgctctagttcaACCCCGTCAATCAGGCTAATGTTTGTTGTCACCGATGCAGAAGAAATAGACAAATCCAATGCAAAACTCCAGAAGTCtgtagctcaaacacacacaatattTAAGAGGGGTTGGAAGCACTAAATCACGCCGGGGTGACCATTGGAATCAAAGTTGTGCTATATTGTAAAGCACTTTGGACTGCGCTTGTGCATGGGCATAAACAAATAAAGGTTTTTATTATACTTATTATTAATGAA
>XM_021563018.2
CCGATCTATCTATGATTTGTGGAGATAGCACTGAGTAGCAGACGGACCGTCCTGAATACGGTGAACCTAATGCGTGCTGCGTCCACCTACTCTCCTGTGTGGGAGCAACTGGGGACAATCTTTTGAATACTTTTTCCACAGAACATCCTGGAAGGTGTATCCTAGACGGGATTAACCGTATTTCAGGGCCACCACAGTAAGATACTGACCATGGGAGATTGCATCTCAGTCCGTGCTCTGCTAATGCTTCTGGCCCTAGTCAGCTATCTAATTGCACTGACATTCAACATATTGGCTCTATTTGGGCCCTGGACAGGTGCTTTCATGCAAACCACACAGTATGTACTGAGCAAGTCCACAACGCACCTAACCCCAGATAGATGGGTACTCTTTCTATGGGATGTCCTTAACATCTGGTTGATTGGCATGTTCATCTATCTGATACACAATCTCCGTAGAAGGGAAGCTTATACATGGATGTACACCACTCCTGCTGTCCTGCCCTATGGATTCTACTTGTCCTGGATCGTAAATAGCATGTTGAATATGGCATGGTTATTTCTGTACGACAAAGAAAAGATGGTGCCAACGCTCCTGATCACAGCATTACAGGCCATCTCAAATTGCGTGATTATCATGTTCTCCTGCTGCGGACTGGTCGTCTATGGAGCGTGGCTCCACAAATATCACAACAATGATCTCTGGCTCATTCGAATATTGGTGCAAAACGGAGTGGCTTTGTATGCAACATGGTGGGCTGTGGCTACCTTTTTACACTTGACCGTTGTTTTAGACCATCAAACCCCAATACCCAAGACAGACGCTGCCATAATGGTACTAGTGCTGCTCCAATTGGGACTCATAGGATGGTTTGTCATAGAGAACTGGTACCTGGATAAGCACGTGCGCTACATCCTCACAGTGTACCCTGTGGTGATCCTGGTGTTGGCAGCGAGTGTGGCCAATCCAGCCACGCCCGGTACCCACATAGACATCATGTCTGCCGTCATCTTGGCCATAACCAGTGTCATATTTATTGTACGCATCATCATGGTGTTATGGAAGCACAAGCATCAACCACTTTACGGAGAAGAGGAGCTCAGGTCACCGGTGGACATTGCCAGGACACAGAAGCTCATCTTCATGTGAGGGGAGACAGCTGCTGTGGATATATGTAGGCCCCTGTTGTTTTCCTTAACATTTAATGGCTGAGACCGATGTGACCAAATCCTCCCTATGTCCACAGCACATGTCGATGGAGATTTGGTACTTCGCTACAGGCTTTCCACGTGATGGGTGGGGCCTCTGCACTAGCCAATCCAATGCTAATGTCTTTCTAAGCTAATTAAACCATATCAATTACTGTGTGTCAAAACAATGAACCGAAATGCTCTCATGCTGTCAACACTAAAGCGATATTAATATGATcatgtttttattgttttgtcCATCTTTTAGTACCACCACGTTGTTTTTGTACCCTATTCTTGTCTACCTTTGTGTTTCTACCTTCTCTTTGAACTTCTTTGGTCCTAGGGATTCCCACAGTGAAAAAGCTGAAATTCACTACATTCCTTCaacagaaatggtttgctcagtgggaaatgaatatccaactagtcagtgacaactgtgtggagtttggaATAACTATGTGAGCGTATTGCAGTATCGCAGGCACtgtgtcctgggatttcctatgatcttctatgtagaataATCCCTTAACATTCTAACGACTCTTGTGTAGCTTGTGAGTGGCATAGAGCAAAATGCATATGCGCGTTCGCGAGCGTCATAGTGGGGTCTTAATAGTTTGCAGCTCATTCGGACTTTGCAGACATTTTTGTGAGAAGGGTCGTTTTCCTGGATCCgcccttgtctcacaaacactgctctagttcaACCCCGTCAATCAGGCTAATGTTTGTTGTCACCGATGCAGAAGAAATAGACAAATCCAATGCAAAACTCCAGAAGTCtgtagctcaaacacacacaatattTAAGAGGGGTTGGAAGCACTAAATCACGCCGGGGTGACCATTGGAATCAAAGTTGTGCTATATTGTAAAGCACTTTGGACTGCGCTTGTGCATGGGCATAAACAAATAAAGGTTTTTATTATACTTATTATTAATGAA

Function

NR:

description
uncharacterized protein LOC109899514 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563017.2 False 2162 mRNA 0.45 8 30329810 30345566
XM_021563018.2 True 2144 mRNA 0.45 8 30329810 30345566

Neighbor

gene id symbol gene type direction distance location
tgif1 LOC106590112 coding upstream 353724 29969944 ~ 29976086 (+)
LOC110489968 LOC106590118 coding upstream 633859 29689717 ~ 29695951 (+)
ackr4b LOC106590119 coding upstream 664889 29657968 ~ 29664921 (+)
si:dkey-12l12.1 LOC106590121 coding upstream 696991 29604542 ~ 29632819 (+)
LOC110489961 LOC106590122 coding upstream 715292 29612631 ~ 29614518 (+)
htr5ab htr5a coding downstream 50251 30395817 ~ 30416375 (+)
insig1 insig1 coding downstream 136451 30482017 ~ 30496207 (+)
en2a en2 coding downstream 172430 30517996 ~ 30521339 (+)
LOC118938958 NA coding downstream 187530 30533096 ~ 30533257 (+)
rbm33a rbm33 coding downstream 209505 30555071 ~ 30601062 (+)
G1279348 NA non-coding upstream 26930 30302672 ~ 30302880 (+)
G1278514 NA non-coding upstream 215574 30112319 ~ 30114236 (+)
G1278468 NA non-coding upstream 259817 30056501 ~ 30069993 (+)
G1278471 NA non-coding upstream 269841 30059551 ~ 30059969 (+)
G1278372 NA non-coding upstream 348515 29939096 ~ 29981295 (+)
G1279379 NA non-coding downstream 4926 30350492 ~ 30352896 (+)
G1279395 NA non-coding downstream 28461 30374027 ~ 30374269 (+)
G1279404 NA non-coding downstream 41311 30386877 ~ 30387089 (+)
G1279449 NA non-coding downstream 49647 30395213 ~ 30395447 (+)
G1279459 NA non-coding downstream 65800 30411366 ~ 30411598 (+)
G1279349 NA other upstream 26391 30303033 ~ 30303419 (+)
G1277279 NA other upstream 1514000 28815366 ~ 28815810 (+)
G1277159 NA other upstream 1705592 28574316 ~ 28624218 (+)
G1276733 NA other upstream 2073404 28190186 ~ 28256406 (+)
G1276288 NA other upstream 2475797 27853618 ~ 27854013 (+)
G1279833 NA other downstream 598605 30944171 ~ 30947330 (+)
G1281462 NA other downstream 1650601 31996167 ~ 31996513 (+)
G1282302 NA other downstream 2341992 32687558 ~ 32698036 (+)
G1284354 NA other downstream 3766241 34111807 ~ 34112271 (+)

Expression


Co-expression Network