htr5ab (htr5a)


Basic Information

Item Value
gene id htr5ab
gene name htr5a
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 30395817 ~ 30416375 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563020.2
AGCCACTGTATCTCTTAGACGCTGCTTTCATAAACACTCACGGTAGGTCCACACGAGGAGTAACAAAGTGAACACATGGAAAAGCAAAAGACTGACCGAACTGTCCGTTCTGTTCCCATGTAGGACTCGTTTTTTCTGAGATTTGGGGATGCTTCAAATCAGAAGCTTCCCCTGTGACAGACCTGTCTGAGCTCCGCTGAACACTGCTGAACATGACCCAGCCCAATGTGAGCCTGGTGACTGCCAACCTCAGCGGGGCCTGGGCCAGGGCCGGAAGCGACGACCTAGGGTATGGAGCAGGGAACTTCTATCGTCCGTTCTCAGTGTTCAGCGTGCTAACTCTCACCCTGCTAGCCATGCTGGTGGTGGCCACCTTCGTGTGGAACCTCCTAGTTCTCCTCACCATCCTGAGGGTACGTACCTTCCACCGCGTGCCCCACAACCTGGTGGCCTCCATGGCCATCTCGGACGTGATGGTGGCCGCCCTGGTCATGCCCCTGAGCCTGGTGCACGAGCTCAACGGGAGGCTGTGGAAGCTGGGCCGCGTGCTCTGCCAGGTATGGATCTCCTTCGACGTGCTCTGCTGCACGGCCAGCATCTGGAACGTGACGGCCATCGCCCTGGACCGCTACTGGTCCATCACCAGACACTTGGAGTACACGCTCAAGACCCGCAAGAGGATCTCCAATGTGATGATTGCTCTTACCTGGCTGTTGTCCTCCGTCATCTCCCTGTCGCCGCAGTTCGGCTGGGGGGAGACCTACTCGGAGGAGGGCATGGAGTGCCAGGTGAGCCAGGAGCCCTCCTACACTATCTTCTCCACCTTCGGAGCGTTCTACCTGCCGCTGTGCGTGGTGCTCTTCGTCTACTGGAAGATCTACAAGGCTGCCAAGTTCCGTATCGGCTCGTGCAAAACCAACACCATCACGCCTATGGCTGAGGTGATTGAGGTGAAGGAAACGTCGCGGCAGCCCCAGATGGTGTTCACAGTGCGCCACGCCACTGTGACCTTCCAGACGGACGGCGACACGTGGCGCGAGCAGAAGGAGAAGAAGGCGGCACTGATGGTGGGCATCCTGATCGGCGTCTTCGTCCTCTGCTGGATCCCCTTCTTCCTCACGGAGCTCATCATCCCGCTGTGCCACTGCGACATCCCGCCCATCTGGAAGAGCATCTTCCTGTGGCTGGGCTACTCCAACTCCTTCTTCAACCCGCTTATCTACACCGCCTTTAACAAGAACTACAACAACGCCCTTAGGAACCTGTTCTCCCGTCAACGCTGAGGCTGAGGGCTAAAGGTTGAGGGCTAAAGGTTGAGGGCTAAAGGTTGAGGGCTAAAAGACAATGAGGGCTAAAGGACAAAACAGATCATGCCAAATAGCGGTTAAAATCAACGGGTGGCCGTCCAATTGTCTCTGACCACAGAACATTGGCCATCATTTTCTGTTAATTTAAAACTAAGGCTGAGGCTGGGGATAAGGCAGAGGCGGAGAATGGGGCTGTCTTGAAAAAACACACCATCACATGATCAAATTGATGTCACAGGAATGGTGTTGAGGGGGGTAACGTTCCTTAGATACACCATAGACTGAAAACAAAATAAATACGGTTCTCTCATAAACCATAGGACTCAACTACAAACCATggccagctagcacatttggttccttggaagttgtgggaacgtacatttttgttttcccattggttctgggaatgaagccatacgtttcctgactgTTAAAACTGAATGTTTTTTTAAACGTTCTAAGAATGGAAGTGAAAATTTCACCTGTTCTGGGAACttacatttttaggttgcagagaggttctgagaaaaTTTTTCTATTGTTCCCTGAATGTTAAATAACACTGCTAGTttaactccaagcacagatagaacattatttggaaaggcattaatcatgcaaacacatttcttTCTTCTTGTGTCAGTCAGATTCAAACCTATAATCTTCTGCTctttatccatggaattagtccactgcaccaccaggaACAAGCTATTAATTTAAACAGACcctatttcaaaggaaacaagcccTCATTAAGagcaggtgtggccaattagtagGTGTGGCCAACAAACCTGAACAGACTTAACAAGATTTTTGTTGATTGTGAGAAcgggaatgtatatgtttttaaataacattctgagaacgtTCTGGGAACGTTACTaacattttcttgtgtttttttatggaaagttttcttaatgttctgagaacatgactttaaatagaatcatgaggaaacctgtaaaaaacgttatgctgaagtactgacatGTCCACAGAAGAATATTGTTTCTTAAAGTTATCTGAATGTTCTGAGAAGATGACTTttaatagaaccatgaggaaacctgtaggaagcgttatgggaaggttgtatgcaaaataactaggacaaccacgctctcaccaagctctaagaaacatatggttctcagaacgttatgtgcttgCTGGGTATATAATCAACAAACCGTGGACTACATTGTAAAATATGTAGTAGATAACAAACTAGGAACCACATTACAATCCGTGGATTTGGCAACCATCTATTCACTCCGTAGATGTTTAACAACTATTGATTTTCTCTGTGAATAAAACCGATTGTGGTCCACAAACTGAAGTCATCAAGCATTATTGTGATCATCTTGTAACTGACATACACCATATTGAGAAAGTACAGTTTTAGATTGCTGTGTCCAAATAAGATAATACTGTATCAAAATGAAATAAACGGATGAAAAT
>XM_021563021.2
AGCCACTGTATCTCTTAGACGCTGCTTTCATAAACACTCACGGTAGGTCCACACGAGGAGTAACAAAGTGAACACATGGAAAAGCAAAAGACTGACCGAACTGTCCGTTCTGTTCCCATGTAGGACTCGTTTTTTCTGAGATTTGGGGATGCTTCAAATCAGAAGCTTCCCCTGTGACAGACCTGTCTGAGCTCCGCTGAACACTGCTGAACATGACCCAGCCCAATGTGAGCCTGGTGACTGCCAACCTCAGCGGGGCCTGGGCCAGGGCCGGAAGCGACGACCTAGGGTATGGAGCAGGGAACTTCTATCGTCCGTTCTCAGTGTTCAGCGTGCTAACTCTCACCCTGCTAGCCATGCTGGTGGTGGCCACCTTCGTGTGGAACCTCCTAGTTCTCCTCACCATCCTGAGGGTACGTACCTTCCACCGCGTGCCCCACAACCTGGTGGCCTCCATGGCCATCTCGGACGTGATGGTGGCCGCCCTGGTCATGCCCCTGAGCCTGGTGCACGAGCTCAACGGGAGGCTGTGGAAGCTGGGCCGCGTGCTCTGCCAGGTATGGATCTCCTTCGACGTGCTCTGCTGCACGGCCAGCATCTGGAACGTGACGGCCATCGCCCTGGACCGCTACTGGTCCATCACCAGACACTTGGAGTACACGCTCAAGACCCGCAAGAGGATCTCCAATGTGATGATTGCTCTTACCTGGCTGTTGTCCTCCGTCATCTCCCTGTCGCCGCAGTTCGGCTGGGGGGAGACCTACTCGGAGGAGGGCATGGAGTGCCAGGTGAGCCAGGAGCCCTCCTACACTATCTTCTCCACCTTCGGAGCGTTCTACCTGCCGCTGTGCGTGGTGCTCTTCGTCTACTGGAAGATCTACAAGGCTGCCAAGTTCCGTATCGGCTCGTGCAAAACCAACACCATCACGCCTATGGCTGAGGTGAAGGAAACGTCGCGGCAGCCCCAGATGGTGTTCACAGTGCGCCACGCCACTGTGACCTTCCAGACGGACGGCGACACGTGGCGCGAGCAGAAGGAGAAGAAGGCGGCACTGATGGTGGGCATCCTGATCGGCGTCTTCGTCCTCTGCTGGATCCCCTTCTTCCTCACGGAGCTCATCATCCCGCTGTGCCACTGCGACATCCCGCCCATCTGGAAGAGCATCTTCCTGTGGCTGGGCTACTCCAACTCCTTCTTCAACCCGCTTATCTACACCGCCTTTAACAAGAACTACAACAACGCCCTTAGGAACCTGTTCTCCCGTCAACGCTGAGGCTGAGGGCTAAAGGTTGAGGGCTAAAGGTTGAGGGCTAAAGGTTGAGGGCTAAAAGACAATGAGGGCTAAAGGACAAAACAGATCATGCCAAATAGCGGTTAAAATCAACGGGTGGCCGTCCAATTGTCTCTGACCACAGAACATTGGCCATCATTTTCTGTTAATTTAAAACTAAGGCTGAGGCTGGGGATAAGGCAGAGGCGGAGAATGGGGCTGTCTTGAAAAAACACACCATCACATGATCAAATTGATGTCACAGGAATGGTGTTGAGGGGGGTAACGTTCCTTAGATACACCATAGACTGAAAACAAAATAAATACGGTTCTCTCATAAACCATAGGACTCAACTACAAACCATggccagctagcacatttggttccttggaagttgtgggaacgtacatttttgttttcccattggttctgggaatgaagccatacgtttcctgactgTTAAAACTGAATGTTTTTTTAAACGTTCTAAGAATGGAAGTGAAAATTTCACCTGTTCTGGGAACttacatttttaggttgcagagaggttctgagaaaaTTTTTCTATTGTTCCCTGAATGTTAAATAACACTGCTAGTttaactccaagcacagatagaacattatttggaaaggcattaatcatgcaaacacatttcttTCTTCTTGTGTCAGTCAGATTCAAACCTATAATCTTCTGCTctttatccatggaattagtccactgcaccaccaggaACAAGCTATTAATTTAAACAGACcctatttcaaaggaaacaagcccTCATTAAGagcaggtgtggccaattagtagGTGTGGCCAACAAACCTGAACAGACTTAACAAGATTTTTGTTGATTGTGAGAAcgggaatgtatatgtttttaaataacattctgagaacgtTCTGGGAACGTTACTaacattttcttgtgtttttttatggaaagttttcttaatgttctgagaacatgactttaaatagaatcatgaggaaacctgtaaaaaacgttatgctgaagtactgacatGTCCACAGAAGAATATTGTTTCTTAAAGTTATCTGAATGTTCTGAGAAGATGACTTttaatagaaccatgaggaaacctgtaggaagcgttatgggaaggttgtatgcaaaataactaggacaaccacgctctcaccaagctctaagaaacatatggttctcagaacgttatgtgcttgCTGGGTATATAATCAACAAACCGTGGACTACATTGTAAAATATGTAGTAGATAACAAACTAGGAACCACATTACAATCCGTGGATTTGGCAACCATCTATTCACTCCGTAGATGTTTAACAACTATTGATTTTCTCTGTGAATAAAACCGATTGTGGTCCACAAACTGAAGTCATCAAGCATTATTGTGATCATCTTGTAACTGACATACACCATATTGAGAAAGTACAGTTTTAGATTGCTGTGTCCAAATAAGATAATACTGTATCAAAATGAAATAAACGGATGAAAAT
>TU1461105
ACACGAGGAGTAACAAAGTGAACACATGGAAAAGCAAAAGACTGACCGAACTGTCCGTTCTGTTCCCATGTAGGACTCGTTTTTTCTGAGATTTGGGGATGCTTCAAATCAGAAGCTTCCCCTGTGACAGACCTGTCTGAGCTCCGCTGAACACTGCTGAACATGACCCAGCCCAATGTGAGCCTGGTGACTGCCAACCTCAGCGGGGCCTGGGCCAGGGCCGGAAGCGACGACCTAGGGTATGGAGCAGGGAACTTCTATCGTCCGTTCTCAGTGTTCAGCGTGCTAACTCTCACCCTGCTAGCCATGCTGGTGGTGGCCACCTTCGTGTGGA
>TU1461104
GGAGCTCATCATCCCGCTGTGCCACTGCGACATCCCGCCCATCTGGAAGAGCATCTTCCTGTGGCTGGGCTACTCCAACTCCTTCTTCAACCCGCTTATCTACACCGCCTTTAACAAGAACTACAACAACGCCCTTAGGAACCTGTTCTCCCGTCAACGCTGAGGCTGAGGGCTAAAGGTTGAGGGCTAAAGGTTGAGGGCTAAAGGTTGAGGGCTAAAAGACAATGAGGGCTAAAGGACAAAACAGATCATGCCAAATAGCGGTTAAAATCAACGGGTGGCCGTCCAATTGTCTCTGACCACAGAACATTGGCCATCATTTTCTGTTAATTTAAAACTAAGGCTGAGGCTGGGGATAAGGCAGAGGCGGAGAATGGGGCTGTCTTGAAAAAACACACCATCACATGATCAAATTGATGTCACAGGAATGGTGTTGAGGGGGGTAACGTTCCTTAGATACACCATAGACTGAAAACAAAATAAATACGGTTCTCTCATAAACCATAGGACTCAACTACAAACCATggccagctagcacatttggttccttggaagttgtgggaacgtacatttttgttttcccattggttctgggaatgaagccatacgtttcctgactgTTAAAACTGAATGTTTTTTTAAACGTTCTAAGAATGGAAGTGAAAATTTCACCTGTTCTGGGAACttacatttttaggttgcagagaggttctgagaaaaTTTTTCTATTGTTCCCTGAATGTTAAATAACACTGattatttggaaaggcattaatcatgcaaacacatttcttTCTTCTTGTGTCAGTCAGATTCAAACCTATAATCTTCTGCTctttatccatggaattagtccactgcaccaccaggaACAAGCTATTAATTTAAACAGACcctatttcaaaggaaacaagcccTCATTAAGagcaggtgtggccaattagtagGTGTGGCCAACAAACCTGAACAGACTTAACAAGATTTTTGTTGATTGTGAGAAcgggaatgtatatgtttttaaataacattctgagaacgtTCTGGGAACGTTACTaacattttcttgtgtttttttatggaaagttttcttaatgttctgagaacatgactttaaatagaatcatgaggaaacctgtaaaaaacgttatgctgaagtactgacatGTCCACAGAAGAATATTGTTTCTTAAAGTTATCTGAATGTTCTGAGAAGATGACTTttaatagaaccatgaggaaacctgtaggaagcgttatgggaaggttgtatgcaaaataactaggacaaccacgctctcaccaagctctaagaaacatatggttctcagaacgttatgtgcttgCTGGGTATATAATCAACAAACCGTGGACTACATTGTAAAATATGTAGTAGATAACAAACTAGGAACCACATTACAATCCGTGGATTTGGCAACCATCTATTCACTCCGTAGATGTTTAACAACTATTGATTTTCTCTGTGAATAAAACCGATTGTGGTCCACAAACTGAAGTCATCAAGCATTATTGTGATCATCTTGTAACTGACATACA

Function

symbol description
htr5a Enables G protein-coupled serotonin receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger; adenylate cyclase-inhibiting serotonin receptor signaling pathway; and chemical synaptic transmission. Predicted to act upstream of or within adenylate cyclase-activating G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be active in dendrite. Predicted to be integral component of postsynaptic specialization membrane.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007210 serotonin receptor signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0004993 G protein-coupled serotonin receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563020.2 False 2783 mRNA 0.47 3 30395817 30416375
XM_021563021.2 False 2774 mRNA 0.47 3 30395817 30416375
TU1461105 False 334 TUCP 0.54 2 30395867 30408017
TU1461104 True 1554 lncRNA 0.40 2 30414713 30416294

Neighbor

gene id symbol gene type direction distance location
LOC110489977 LOC106590110 coding upstream 50251 30329810 ~ 30345566 (+)
tgif1 LOC106590112 coding upstream 419731 29969944 ~ 29976086 (+)
LOC110489968 LOC106590118 coding upstream 699866 29689717 ~ 29695951 (+)
ackr4b LOC106590119 coding upstream 730896 29657968 ~ 29664921 (+)
si:dkey-12l12.1 LOC106590121 coding upstream 762998 29604542 ~ 29632819 (+)
insig1 insig1 coding downstream 65642 30482017 ~ 30496207 (+)
en2a en2 coding downstream 101621 30517996 ~ 30521339 (+)
LOC118938958 NA coding downstream 116721 30533096 ~ 30533257 (+)
rbm33a rbm33 coding downstream 138696 30555071 ~ 30601062 (+)
rnf32 rnf32 coding downstream 298337 30714712 ~ 30725178 (+)
G1279449 NA non-coding upstream 370 30395213 ~ 30395447 (+)
G1279404 NA non-coding upstream 8728 30386877 ~ 30387089 (+)
G1279395 NA non-coding upstream 21548 30374027 ~ 30374269 (+)
G1279379 NA non-coding upstream 42921 30350492 ~ 30352896 (+)
G1279348 NA non-coding upstream 92937 30302672 ~ 30302880 (+)
G1279498 NA non-coding downstream 16814 30433189 ~ 30433524 (+)
G1279501 NA non-coding downstream 17509 30433884 ~ 30434118 (+)
G1279504 NA non-coding downstream 18297 30434672 ~ 30434922 (+)
G1279517 NA non-coding downstream 27109 30443484 ~ 30443712 (+)
G1279520 NA non-coding downstream 30502 30446877 ~ 30447153 (+)
G1279349 NA other upstream 92398 30303033 ~ 30303419 (+)
G1277279 NA other upstream 1580007 28815366 ~ 28815810 (+)
G1277159 NA other upstream 1771599 28574316 ~ 28624218 (+)
G1276733 NA other upstream 2139411 28190186 ~ 28256406 (+)
G1276288 NA other upstream 2541804 27853618 ~ 27854013 (+)
G1279833 NA other downstream 527796 30944171 ~ 30947330 (+)
G1281462 NA other downstream 1579792 31996167 ~ 31996513 (+)
G1282302 NA other downstream 2271183 32687558 ~ 32698036 (+)
G1284354 NA other downstream 3695432 34111807 ~ 34112271 (+)
G1286648 LOC106590042 other downstream 5619208 36035583 ~ 36093396 (+)
LOC110489961 LOC106590122 coding upstream 800195 29612631 ~ 29614518 (+)
G1279459 NA non-coding upstream 3115 30411366 ~ 30411598 (+)
htr5ab htr5a other upstream 6696 30395817 ~ 30416375 (+)

Expression


Co-expression Network