ube3c (ube3c)


Basic Information

Item Value
gene id ube3c
gene name ube3c
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 30809968 ~ 30857952 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563041.2
CCATTATTCTGAAGAGGCGGATGTATTCGTTTATGTTGTGTTTCTggaaagaaggggagaaggagaaaaCAATACATGTTTGTTTAATTTAGTATCGCACAAAAGTCTTATGTACTTTTTAATTTGTTGGTCATTTCATAAATCAAAGATTGCTGTAATACCCACTTTGTAAAGTCCTGAATTGAACCAAGTTAAGGGTCTTTCATTGATGGTTCGAAAAATCTAACCATGAGCTTCAGCTTTGAGGGAGATTTCAAAACAAGACCTAAGGTGTCTCTTGGGGGAGCGAGTAAAAAGGAGGAAAAAGCATCTCTTCTACACCGGACACAAGAGGAAAGGCGAAAAAGAGAGGATGAAAGACGAAGATTGAAGAACGCTATTGTCATTCAGTCCTATATACGAGGATACCATGACCGAAAACAGCAATATGCCATCCAGAGGGGCAACTTTGACCGCTGCGTCTGCCAGGCACAGTCAGAAGGTGGACCGCCAATGTCCGACGCTGCCAGTCTTAGTCTCCTAACGAGGCAACTCCTTTTTTTCTACAGACAGAGTGAGGATTCACGGAGATTGatATGGATTTGTCAGAACCTAGTGAAACACAATGGGCAGTTTTTGAAGCTGCTGGCAGGGCCCGAGAGACAGACGTGTGTGTTTCAGATCAAGAGGGTCCTGGGCTCCTGCTGCAGACTTCTGCAGATCTGCAAGGATGACAGTTTGAATGTTGCCGTCCCCATGAGGATGCTGGAGATCTTTTCTTCAGAGAGAACTTATCTTCCTGTCCTTGAAGACATGAATTGTGTAGCGTCGATAATCGAGCAGATTTTGCACTATATGGTACAGAAAGgatACTACAGGTCACTTTATATTCTAGTGAATCACAAGCTCCCTTCCAGTGTGGAGTACAGCGATGCTCCCTATGGTGCACACGCTATCCCCTTGGCAAGCACACTGCTGGAGCACACGCTGAAGCCCCTGCACTTTACCTACTCCTCCTGCACTACAGGCGCAAGGCAGTTTGTGTTTGCGGCCTTCACTGAGGAGTTCACCTCGGCGCCTTTCACGGAGCAGATCTTTCATTTCTTTATTCCGGCGTTGTCCGATCGGCGCCTCCACTTCCCCTTCGAGGCCTTCCTGTGCTCCCTGCAGGCCACCGTAGTCTCCTCCGCAGCGGCGCTGAAACGTGCGCCATGGCTCTTCTACTTTGTCCTCTCGGTCGGGGAGACCTGCTTGGGTTCATTGTCAGAGGAGGGCCTCCAGCTATACCTGCGAGCTCTGCAGgccctcctgcctctcctccccgtGTCAGAGAGCACCAGCAGGCCGGAGGTCATCAGTGACTCTGAGGACGAGGAGGACACCAACACCCAGGCTCCGTCCACACAGGACGACAGCTATCGGATATCGGTGCAGCTGATCACGGAGGAGTGCGTCCACAAGCTGGACACAAAGCAGCAGACGAACGCGCTGCTCAACCTGGTGTGGAGGGACTCGGCCAGCGAGGAGGTCTTCACCATGATGGCCTCCATCTGCCACACACTCATGGTGCAGCACCGCATGATGGTGCCCAAAGTCAGGCTTCTGTACAGTTTAGCGTTTAATGCACGTTTCCTGAGACATCTCTGGCACCTGATACAGTCCATGACCACCAAAATGATCACGGGgtccatggTTCCGCTGTTGCAGGTCATTTCACGGGGGTCTCCCATGTCCCTGGAAGACTCCAATCGCATCATTCCCCTCTTCTATCTCTTCAGTTCCCTCTTCAGCCACTCGCTCATCTCCGTGCACGACAGCGAGTTCTTTGGCTACCCTATGGAGGGCCATGGCCACAGCAATACCACCATGATGCCGTTCACATTGTCCGAGCTGGTGAACCTGTCTCAGTTGCTGAGGGACGCGTGTCTGGGCATCATCAAGCTGGCCTACCCCGAGACCAAGACGGAGCACCGCGAGGAGTACATGGCCGCCTTCCGCAGCGTGGGGGTCAAAACCAACACAGAGGTGCAGCAGCGCATCCAGGCCGAGCAGAAACGCTGGGTTCAGCTCTTCAAgGTGATCACTAACTTGGTGAAGATGGTGAAGGCTCGTGACATCAGACGTCCCTTCTGTCCGGCAGGTCATTGGCTCTCTGAAGAGGTCAACATCAGAGCAGATAAGGTGACCCAGCTGTACGTCCCCTCGGCCAGACACGTGTGGAGGACACGGAGGATGGGACGCATCGGGCCCCTGCAGTCCACACTGGATGtggGGATGGAGCCTCCACAGCTGTCTGTTTCTGAGGAGAGACACTTGGCCATTCTGACCGAGCTGCCCTTCGTCGTGCCCTTTGAGGAACGAGTTAAGATCTTCCAGAGATTGATCTACGCGGACAAGCGGGACGTACAGGGAGACGGGCCGCTTCTGGACGGGATCATCGTCACCATCAGACGGAACTACATCTACGAGGACGCCTACGACAAGCTCTCCCCAGATAACGAGCCGGACCTGAAGAAACGTGTCCGGGTGCACCTACTCAACGCCCACGGCCTGGACGAGGCGGGCATCGACGGCGGGGGCATCTTCCGCGAGTTCCTCAACGAGCTGCTCAAGTCGGGCTTCAACCCCAACCAGGGCTTTTTCAAGACCACCAACGAGGGCCTGCTTTATCCTAGCCCCACCGCCCAGATGCTAGTGGGGGACTCCTTCGCCAGACACTACTACTTCCTGGGACGGATACTGGGGAAGGCCCTGTATGAGAACATGCTGGTGGAGCTGCCGTTTGCCAGCTTTTTCCTGTCCAAGCTGCTGGGCACCAGTGCTGACGTGGACATCCACCACCTGGCCTCGCTGGACCCCGAGATGTACCGCAACCTGCTCTTCCTCAAGAGCTACGAGGACGACGTGGAGGACCTGGGACTCAACTTCACCATCGTCAACAATGACCTGGGAGAGGCACAGGTGGTTGAGCTGAAGCCTGGAGGGAAGGACATCCCTGTGTCCACGGCCAACAGGATAGCGTATATCCATTTAGTGGCAGATTACCGACTCAACAAACAGATCAGGCCCCACTGCCTGGCCTTCAGACAGGGCCTGGCCAATGTGGTCAACCTGGAGTGGCTGCGTATGTTTGACCAGCAGGAGATCCAGGTGTTGATATCTGGAGCTCATGTACCCATTTGTCTTGACGACCTGAAGACGTTTACAAGCTACTCAGgTGGTTACACTGCCACTCACCCTGTCATTACCATCTTCTGGGAGGTGGTGGAAAGCTTCACCGATGAAGAGAAACGCAAGCTGCTCAAGTTTGTCACCAGTTGCTCGCGGCCTCCCCTCCTGGGCTTCAAGGAGCTGTACCCAGCCTTCTGCATCCATAACGGGGGGAATGACCTGGAGCGCCTGCCCACGGCCTCCACCTGCATGAACCTGCTCAAGCTGCCCGAGTTCTGCGACCAGCACCTGATGAGGAACAAGTTGCTGTACGCCATCGAGTCCTCCGCAGGCTTCGAGCTCagttgaggggggggggtgtctgtctctgactccCTGAAAACCACTGACTCAATGGACATGGATGGGCCAGAGAAGACTGTCTGTTGAGAAAGAGCGTGAAACAAAGACTTATGGGAAAGATGCATTGGTATCTCTCTGACTGGGTGGAAAACAAACAGGGGTGAAAGGAGTGTCACCCAAATCGGATGAGGAAGAGGGGGACGAGGGAAGAATGGAGGGGAAGGGAAAAGTGCAgtgattttttaattttttttatataacttAAATGTGTATTAAAAATCTACAAAACGCAAAAAAGAGCAGCAACAATAGAATCTTGGGGCTGTTTTATTTGAAAGACTTTGTGCAAAAGTAAATGAACAGACGAGATCTACTGTGAGTGTGTCCATGGCGATACATTTGACCCTTAAGCACAGCGAGTTGTGAAATTATCAACAGAaataaacatcaacaacaacgGAGTGTTCACCAAAGATTGACCCGTGCTGTGCTGTTGGAAAATGGGTAGAAGAGAGGCACAGGAAATAAGAGGACCGAGGTGGGAGATGGGGTGACATACAGGACTGCAACACTCCTAACATCCCTGTGTCAAGGGTTTTAAGAGGGTCTAATAGCGCCTgttccaaatggcgccctattccctatatcgttcactacttttgacctgatccctatgggccctggtcaaaagtagtgcactattacgggaatagggtgccattagggacatTTTTAACTATAGGTCATGTTTTGTGATTACTGTAATGGTTATTATCGTTTTCAGAACATAAAAATGCTAATGGTTTGGGCAGGCTACTGTGTTGGTTTTTCAAGGCAAAGACTAGTATTGTTGATAAGAGATTGGACACAACTATTGATTATGATGATCATGGAATATTTGTTAATATGTATATGTGTTTACACCACTCTTGTACAATTCCTTCACTCATTATTTGTACAGGCTGCTTTTCTCTGTTTCTTTTTCCTCTTGTGTTTCGAATGAAGGCCTGGTGTTCTCACACACAGATTAAAGTGAACAATCTATTCTACA

Function

symbol description
ube3c Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent protein catabolic process. Orthologous to human UBE3C (ubiquitin protein ligase E3C).

NR:

description
ubiquitin-protein ligase E3C

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K10589 UBE3C; ubiquitin-protein ligase E3 C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563041.2 True 4543 mRNA 0.51 24 30809968 30857952

Neighbor

gene id symbol gene type direction distance location
nom1 nom1 coding upstream 18267 30783923 ~ 30791701 (+)
rnf32 rnf32 coding upstream 84790 30714712 ~ 30725178 (+)
rbm33a rbm33 coding upstream 208906 30555071 ~ 30601062 (+)
LOC118938958 NA coding upstream 276711 30533096 ~ 30533257 (+)
en2a en2 coding upstream 288629 30517996 ~ 30521339 (+)
dnajb6b NA coding downstream 9026 30866978 ~ 30914115 (+)
LOC118938793 NA coding downstream 52181 30910133 ~ 30911620 (+)
dync2i1 wdr60 coding downstream 431247 31289199 ~ 31306437 (+)
wdr97 LOC106590093 coding downstream 448694 31306646 ~ 31332697 (+)
nrn1a LOC106590090 coding downstream 583542 31441494 ~ 31447498 (+)
G1279793 NA non-coding upstream 5958 30803803 ~ 30804010 (+)
G1279605 NA non-coding upstream 292363 30517389 ~ 30517605 (+)
G1279541 NA non-coding upstream 316231 30490585 ~ 30493737 (+)
G1279535 NA non-coding upstream 339622 30470111 ~ 30470346 (+)
G1279958 NA non-coding downstream 217339 31075291 ~ 31127396 (+)
G1279960 NA non-coding downstream 218117 31076069 ~ 31077550 (+)
G1279966 NA non-coding downstream 226478 31084430 ~ 31132153 (+)
G1280062 ncapg2 non-coding downstream 353389 31211341 ~ 31214897 (+)
G1280080 NA non-coding downstream 379722 31237674 ~ 31238866 (+)
htr5ab htr5a other upstream 401951 30395817 ~ 30416375 (+)
G1279349 NA other upstream 506549 30303033 ~ 30303419 (+)
G1277279 NA other upstream 1994158 28815366 ~ 28815810 (+)
G1277159 NA other upstream 2185750 28574316 ~ 28624218 (+)
G1276733 NA other upstream 2553562 28190186 ~ 28256406 (+)
G1279833 NA other downstream 86219 30944171 ~ 30947330 (+)
G1281462 NA other downstream 1138215 31996167 ~ 31996513 (+)
G1282302 NA other downstream 1829606 32687558 ~ 32698036 (+)
G1284354 NA other downstream 3253855 34111807 ~ 34112271 (+)
G1286648 LOC106590042 other downstream 5177631 36035583 ~ 36093396 (+)

Expression


Co-expression Network