LOC118938793


Basic Information

Item Value
gene id LOC118938793
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 30910133 ~ 30911620 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036080.1
CCCCCCAATTTAGTGTTCTGTCCTGAGGTGAAAAGCTCTAAGGCGTGGAGGTTGTACAGAGAGACCCAGGAACAGGCCTGCTGTGTCGACAAGATCTCATAGTGTCCCTTTTGAAATTCAACGTATTATGTATGGGTAAACCTCTATTTCTTGACACATTAAATCCACATGGCTACCGGcTTAAACAACATAATAAAAAAACAATGTGCTGTTTCCATCAACTATCACCAAGTATTCTCTTGGCTTGCTAGAGTATTGAGAATtgtggtggcgcagtggtctaagctgCATGCTCTACCTCCAAGCATTGTGAGTTTGCACCCAGTTCTGGGTGAGCTAATTTTATTGGGGGAGCGAAGAGGAAGACATATGTCCAATGTTCTGGGGACATTTTTTAAACATCCGAAATCGAAGTGACCAGGCTGGTTCTAGAGTaaactgtaaagcactttgtgacgaCTGCCGACGTAAaaggggctttataaaatacattttctaaacGGGAAGGACTTCTGTCAAGACTGAAAGGGACACATATTTCCATTGAATTCCAAATTCAATTTGTTGCGTTCCTAAACCTTTACGTTGTAAATGAGGTTGTTGATTGTACACCGCACTTAATGTGGTGTTTGTTTCAGATGGATCAATCAATGGCCTCCAGGCTAAGCTTTGTTCAAAGACGGGAGCTAAACACCTTAATAACGACAGCTAATTGGTTGTTGTTGTAACGGGTGGCTAAACAAAAGGCCAGTGACAGAGGCAGACATGTTTGACTGGTAGAGGTCAACATTGAGGGGAATGAAAGGACTGAAAGTGTTCATTAAAGGGCTCTGTTGATCTGCAGTGTAATGACTCGGGGTCAAACACAAAAGCCATGTAATTATCTTACACACACTCAGAAATAGTTCACTCGGGCAGATATACCGTTGGAAAAAAAAACGGTCGGTTCTGGTCTACTTCACGGGGAGAgtctcccatagacaccaatgcaAAAGCAGCTGGGTTTGGATCGTTGTCCACAAACGCAGAGCTGTCAAGCTACTCCTATTCCTCTTTTTGGATTGGAATCATTTCTTTGAATATTTGATGAGGAGTGTTATCAACCGCCTgaaatctatttttttttacacctttatttaactaggcgggtcagttaagaacaaattcttattttcaatgacgcctaggaacagtgggttaactgcctgttcaggggcagaacgacatatttgtatattgtcagctcgggatttgaatttgcaatcttccggttactagtccaacgctctaaccacaaggctaccctgccgccccgttcTATGGTGAACGTATTTCAAATTCATCGTCCTCATGAATATGCATAGACTGTCTTGGATTTAAACAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036080.1 True 1385 mRNA 0.42 2 30910133 30911620

Neighbor

gene id symbol gene type direction distance location
ube3c ube3c coding upstream 52181 30809968 ~ 30857952 (+)
nom1 nom1 coding upstream 118432 30783923 ~ 30791701 (+)
rnf32 rnf32 coding upstream 184955 30714712 ~ 30725178 (+)
rbm33a rbm33 coding upstream 309071 30555071 ~ 30601062 (+)
LOC118938958 NA coding upstream 376876 30533096 ~ 30533257 (+)
dync2i1 wdr60 coding downstream 377579 31289199 ~ 31306437 (+)
wdr97 LOC106590093 coding downstream 395026 31306646 ~ 31332697 (+)
nrn1a LOC106590090 coding downstream 529874 31441494 ~ 31447498 (+)
LOC110490003 cssa29h18orf63 coding downstream 847106 31758726 ~ 31792146 (+)
LOC110490007 LOC106590083 coding downstream 999166 31910786 ~ 31924479 (+)
G1279809 NA non-coding upstream 74671 30835047 ~ 30835462 (+)
G1279806 NA non-coding upstream 78135 30831666 ~ 30831998 (+)
G1279805 NA non-coding upstream 81306 30828627 ~ 30828827 (+)
G1279758 NA non-coding upstream 87762 30821921 ~ 30822371 (+)
G1279793 NA non-coding upstream 106123 30803803 ~ 30804010 (+)
G1279958 NA non-coding downstream 163671 31075291 ~ 31127396 (+)
G1279960 NA non-coding downstream 164449 31076069 ~ 31077550 (+)
G1279966 NA non-coding downstream 172810 31084430 ~ 31132153 (+)
G1280062 ncapg2 non-coding downstream 299721 31211341 ~ 31214897 (+)
G1280080 NA non-coding downstream 326054 31237674 ~ 31238866 (+)
htr5ab htr5a other upstream 502116 30395817 ~ 30416375 (+)
G1279349 NA other upstream 606714 30303033 ~ 30303419 (+)
G1277279 NA other upstream 2094323 28815366 ~ 28815810 (+)
G1277159 NA other upstream 2285915 28574316 ~ 28624218 (+)
G1276733 NA other upstream 2653727 28190186 ~ 28256406 (+)
G1279833 NA other downstream 32551 30944171 ~ 30947330 (+)
G1281462 NA other downstream 1084547 31996167 ~ 31996513 (+)
G1282302 NA other downstream 1775938 32687558 ~ 32698036 (+)
G1284354 NA other downstream 3200187 34111807 ~ 34112271 (+)
G1286648 LOC106590042 other downstream 5123963 36035583 ~ 36093396 (+)

Expression


Co-expression Network