tubb6 (LOC106590085)


Basic Information

Item Value
gene id tubb6
gene name LOC106590085
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 31871514 ~ 31884515 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563081.2
CAGAGGTGAACAGGAATTTAGCGCGCCTGCTAATCAGTTGAGTTTACCAGGCTGCATACACACTCCAGCCGCTAAGACACCTTTgcacacagacagaatgagagaaataGTTCACATACAAGCCGGACAATGTGGGAATCAGATTGGCACCAAGTTTTGGGAAGTTATCAGCGATGAACACGGCATCGATCCGGCAGGAAACTATGTGGGTGACTCATCGCTTCAAATCGACAGGATTAGTGTGTACTACAACGAAGCGTCCGCACACAAGTATGTCCCCAGAGCAATCCTTGTGGACCTGGAACCTGGGACCATGGACAGTGTCCGGTCGGGGTCTTTTGGACAGCTATTCAGACCTGACAACTTTATCTTTGGGCAGACGGGTGCGGGGAACAACTGGGCCAAGGGCCACTACACTGAGGGAGCAGAGCTGGTAGACTCTGTGCTGGATGTGGTGAGGAAGGAGTGTGAGCACTGTGACTGTCTCCAGGGCTTCCAGCTCACCCACTCCCTGGGTGGGGGCACGGGCTCAGGCATGGGGACCCTGCTCATCAGCAAGATCCGTGAGGAGTACCCCGACCGCATCATGAACACGTTCAGCGTCATGCCCTCACCCAAGGTGTCTGATACGGTGGTCGAACCGTACAACGCCACGCTCTCTGTGCACCAGCTGGTGGAGAACACGGATGAGACATATTGCATTGACAACGAGGCACTCTACGACATCTGCTTCCGTACCCTAAAACTGACCACACCCACTTACGGAGACCTCAACCACCTGGTGTCGGCCACCATGAGCGGTGTCACCACCTCACTGCGTTTCCCTGGCCAGCTCAACGCCGACCTTCGCAAACTGGCCGTCAACATGGTGCCCTTTCCCCGCCTACATTTCTTCATGCCTGGCTTTGCACCACTAACCGCCAGGGGGAGCCAGCAGTATCGCGCCCTGACAGTGCCCGAACTCACTCAGCAAATGTTTGACGCCCGCAACATGATGGCAGCTTGCGACCCGCGCCATGGCCGCTACCTCACCGTGGCCACTGTTTTCCGAGGGCCCATGTCCATGAAGGAGGTGGACGAGCAGATGCTGGCCATCCAGAACAAGAACAGCAGCTACTTCGTGGAGTGGATCCCCAACAACGTCAAGGTGGCCGTGTGTGACATTGCGCCCCGCGGCCTTAAGATGGCCTCCACATTCATCGGCAACAGCACGGCCATCCAGGAGCTGTTCAAGCGCTTCTCGGAGCAGTTCTCGGCCATGTTCCGCCGCAAGGCCTTCTTGCACTGGTTCACCGGGGAGGGCATGGACGAGATGGAGTTCACAGAGGCCGAGAGCAACATGAACGACCTGGTGTCTGAGTACCAGCAGTACCAGGAGGCCACGGCTAATGACGGGGAAGAGACATTCGACGACGAGGAAGAAGAACTCAATGAGGAATGGAACCTTGAAGCCCAATAGCTTGAAGCCCCCATCTTTGAAGACAATGTTATCTCACTGAGCTAAAGCTAAGGCGTTAGCACTGGAAACAGAAATATCCCGCAATGAAGCTGACAATGTTTTTACTTTAGTAGTGATTGTTTCAGTATTATCAGACACTGTAAGTTTTATCCCTGTAAGGATTCACTGACTCAGAAATTATGAAATGAATCGTTGACAGCAGAACAAATATGTGAGCAAAAGAAAGCCAAATGAACTCTCTATAGAAAGCTGTCCTTGCATTAGAGCCAGAACCAGATACAGTAATGCTAGATTGCAGTATGTCACAACCAACAACCAACCAAGTAGTTTGCTTTAGTAAGTAAGATGTTGCAATTGTCTTCGAGCATTTCGGGTCTGAATAGTATGTGAATCAAAACTCAATAAATGTTTCCTTGAAATTGTCAA

Function

NR:

description
PREDICTED: tubulin beta-5 chain

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07375 TUBB; tubulin beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563081.2 True 1885 mRNA 0.52 5 31871514 31884515
Loading

Neighbor

gene id symbol gene type direction distance location
dipk1c LOC106590086 coding downstream 25502 31824422 ~ 31846012 (-)
LOC110490002 LOC106590088 coding downstream 113355 31750154 ~ 31758159 (-)
LOC110490955 NA coding downstream 243113 31616010 ~ 31628401 (-)
LOC118938914 NA coding downstream 443342 31424841 ~ 31428172 (-)
maf1b LOC106590091 coding downstream 475127 31368447 ~ 31396409 (-)
cidea LOC106590084 coding upstream 2808 31887323 ~ 31901387 (-)
LOC110490834 NA coding upstream 133884 32018399 ~ 32032349 (-)
sugct LOC106590081 coding upstream 236416 32120931 ~ 32286220 (-)
LOC110490012 LOC106590058 coding upstream 673223 32557738 ~ 32679847 (-)
LOC110490014 LOC106590055 coding upstream 1382489 33267004 ~ 33348714 (-)
G1281365 NA non-coding downstream 3614 31867668 ~ 31867900 (-)
G1281220 NA non-coding downstream 74312 31796958 ~ 31797202 (-)
G1281213 NA non-coding downstream 78755 31792292 ~ 31792759 (-)
G1281205 NA non-coding downstream 82591 31788666 ~ 31788923 (-)
G1281204 NA non-coding downstream 82968 31788297 ~ 31788546 (-)
G1281348 NA non-coding upstream 38971 31923486 ~ 31924463 (-)
G1281508 NA non-coding upstream 66063 31950578 ~ 31951012 (-)
G1281509 NA non-coding upstream 68388 31952903 ~ 31953114 (-)
G1281511 NA non-coding upstream 71297 31955812 ~ 31956014 (-)
G1281514 NA non-coding upstream 75012 31959527 ~ 31959820 (-)
G1281363 NA other downstream 5377 31865289 ~ 31866137 (-)
G1281361 NA other downstream 6878 31864234 ~ 31864636 (-)
dlgap1b LOC106590111 other downstream 1882998 29979175 ~ 30253803 (-)
G1278860 NA other downstream 2239746 29631025 ~ 29631768 (-)
LOC110489947 LOC106590135 other downstream 3167961 28701177 ~ 28724125 (-)
G1282159 LOC106590060 other upstream 591404 32475919 ~ 32478516 (-)
G1283257 NA other upstream 1378065 33262580 ~ 33266218 (-)
G1285645 NA other upstream 3100338 34984853 ~ 34985274 (-)
G1287067 NA other upstream 4273921 36158436 ~ 36158733 (-)
G1288280 NA other upstream 5354659 37239174 ~ 37239410 (-)

Expression

tubb6(LOC106590085) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 12.
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tubb6(LOC106590085) Expression in each Bioproject

Bar chart with 20 bars.
tubb6(LOC106590085) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.

Co-expression Network