LOC110490834


Basic Information

Item Value
gene id LOC110490834
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 32018399 ~ 32032349 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036084.1
ttgttttctgtatagttttagctaccttacagaactgtttgtgTCTCGCGGtgttatttttgttctagtgttcagattTAAACaaacatcatgaacacgtacctcGCTGCGCTTTGGGCCACTCCTTCATCAGACGAGCGTTACAGTGCCTCGAGGAAAATTATTTTCTTGCATCGAATGCGATCAGGCTGAACAATTGAATAGGTGCCGGGTCTCGGACCAGGCGTGGCCTGGCCCAATTTAATCCCTGGTCACAGGACACCATCGCCCACTTACCCCaaggtggctcaacttaccctgaccctatgctcaacttaccccatacccgaGATGCGTGGGTCTTCCAGGCTCTGTCAAAAATTCCAAGGACATTCCCTGGACTCCAAAGGAACGTTTTGCATTGAGAATAGGAGGAGAGAATGTGGAGTGAACGTATACTGTATGGAAAGCAGCAGTCTATTTACACTACAAAGACTTTAAACTCAACGCCTATTCAGAGAGAGACGTGGCTACGCAAACAAAGAGGAATCCTAACTTTGAACGAGACATTCTTCCTGTTGGCCCCCGTCTTGTGGTTTTCTCACTGCATAGAGGAATAGCGATGTTGGTCTAACACACTGAAGTAATATACTAGCCATATCCCTCCCATGGGAATGAAATCCTCAGCTTTGAAATCATTTTTTATTAAGACCATAATCCTATTTTGACGGCTCTCTCGGACAAAAGCGTAAAATGATAGCGAACCAGGAAATGAAAAAGTCTGCACACAGGTCCTGGTCTCAGGAAGGGGGCTAGAGTTTAGGAATGCGACACCTGTTTTTAATTAAGGAGAGGCAAATGGAtacttgtaaaaaatatatattgatttgcaATGCTCATTTAAATTGTCGCAAACTAATCCATAGCAAAACCTGTAacatgttattttacagcccaCATTACTTTAAATAAGAAACTATGTGGTAACAATAGATACTTTCTGGTACTAAGAGCAAATAATTCAACACAATTGATAACTAGCTGGTACAAATTCCTCATAGTGACGTTTGTGTTAGAATCTCAAAGAACTCAAAGTGAAATTACCATTTTAATATTAGTTCATTTTATTTTAACAATTAATTTTAAAGTGTTCAACCAGGTTGATAGAACTGCCAGGGGAAAGAACCCTTTCCAGGAACTCTCTATTGTTTCCAAAAATCACCTTGAATAGAGAACATCGGGGTACAAGATCAACACAGTGTATTATGGTGAATTTCATTTAACTCATAAAATGCCCTGCCATGATTATCAGTAAACGGCAAGATAAATGGCAAACACCTGTGTCTTGTGCTGCCAATGTGTGCTCTGGATTGTTTGGGAAAGAATGCATTGGAGCCGTCAAGCTTTCATCACACTGGGAGCGTGTGATTGATGGTCTTTGGCTGTCGAACCTGACAGAAGCACATGAGCGGCTGTGTTTACCTGCAGCAACCTGCCGCTCTCATCCCTCACGCAGCTTCTTATGTCAGCTATCAGTGCAACAATCGCAAGTAGGCAACACGGCACTTTGAACATGCAGCGTGCAACtatgtgtcagtgtgtttaactgtatgtgtgtagagagagcagaagagagaaatCGTATGTGTAGGGACTGGGgaggttattattatattattcgcTCTAATTTTATTCAATAAACAAAGAGGTGAGTGTTAGATTTCCAATCTAACACTCACCTCTCCTATATTGTTAAATTTGCAGACCAAACAAAATCTGCCCACATCGACAATTGTGGCGATATGCCGTTCTCAGCCTTGAAACCAAAAGTCCGCTTATGATTACGTTGGATCATGTGTTTGCTGCCTCAAAACCATATTTTTTTTCCCAAGGAACAAAAAGTATAGCTGTCTTGTTTTCTCTCCCACCCCTTAAAATCAGCACTTCTAAATGATCCTTGGCAGGAGATTAAACTCGCGGCAGCCTTGACATAGCACTCTCCTGCCTCGCCATTCCCATGAGACGCTCCGCACAAAGTTAGTGTGGGGCCAGGGTCAGCCACTGACGTTGCCCCATTGTTGAGTCTCTCGGTGCAGGGTGAGGACAGGGACAATGGCAACTAGAGAAGACCGGCGTCGGTTGTCACACTTTAGTCTTGTGTGTATTTCTCAGCACCAGCATACCTTACGAGACTCTTTTCAATATTAGGAGAAACATCAGGGTCTTTGATTGCTTACAACTCCATGTTGGAGTAAGATATGAGGATTAAAAGGGTCCCCATTTCAACCTAATACACTCTGGTAAACTCTGTAATAGGTGTGTAAACTCTGATCGACTGCCACGGTGAAAAAAAGTAACGCTTCCTATACTTTCAAATAAATTTTGGGTGCCACAAACTGTGTTTACCCTCCAATTACACCACTGGATTTATTATAATGCAGTTGATACTAACAACTTATCCCCCCCCCCGATTCAAGtcctcttggtaagcaactccagtgtataactggcattgtgttttaggttattgttgaatttgtctcccagtgtctgttggaaagcagaccaggttttcctctataa
>XR_002468756.2
ttgttttctgtatagttttagctaccttacagaactgtttgtgTCTCGCGGtgttatttttgttctagtgttcagattTAAACaaacatcatgaacacgtacctcGCTGCGCTTTGGGCCACTCCTTCATCAGACGAGCGTTACAGTGCCTCGAGGAAAATTATTTTCTTGCATCGAATGCGATCAGGCTGAACAATTGAATAGGTGCCGGGTCTCGGACCAGGCGTGGCCTGGCCCAATTTAATCCCTGGTCACAGGACACCATCGCCCACTTACCCCaaggtggctcaacttaccctgaccctatgctcaacttaccccatacccgaGATGCGTGGGTCTTCCAGGCTCTGTCAAAAATTCCAAGGACATTCCCTGGACTCCAAAGGAACGTTTTGCATTGAGAATAGGAGGAGAGAATGTGGAGTGAACGTGTATAGATCCGCCCAATAAATCTATGATAAGTTTTATTTTCAATCGTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036084.1 False 2562 mRNA 0.42 4 32018399 32032349
XR_002468756.2 True 484 mRNA 0.46 3 32031510 32032349

Neighbor

gene id symbol gene type direction distance location
cidea LOC106590084 coding downstream 117012 31887323 ~ 31901387 (-)
tubb6 LOC106590085 coding downstream 133884 31871514 ~ 31884515 (-)
dipk1c LOC106590086 coding downstream 172387 31824422 ~ 31846012 (-)
LOC110490002 LOC106590088 coding downstream 260240 31750154 ~ 31758159 (-)
LOC110490955 NA coding downstream 389998 31616010 ~ 31628401 (-)
sugct LOC106590081 coding upstream 88582 32120931 ~ 32286220 (-)
LOC110490012 LOC106590058 coding upstream 525389 32557738 ~ 32679847 (-)
LOC110490014 LOC106590055 coding upstream 1234655 33267004 ~ 33348714 (-)
LOC118938795 NA coding upstream 1258880 33291229 ~ 33294593 (-)
LOC110516899 LOC106595224 coding upstream 1871595 33903944 ~ 33906267 (-)
G1281531 NA non-coding downstream 36687 31981374 ~ 31981712 (-)
G1281526 NA non-coding downstream 42313 31975832 ~ 31976086 (-)
G1281525 NA non-coding downstream 43129 31975055 ~ 31975270 (-)
G1281514 NA non-coding downstream 58579 31959527 ~ 31959820 (-)
G1281511 NA non-coding downstream 62385 31955812 ~ 31956014 (-)
G1282150 NA non-coding upstream 430325 32462674 ~ 32462895 (-)
G1282164 NA non-coding upstream 453183 32485532 ~ 32485766 (-)
G1282197 NA non-coding upstream 473287 32505636 ~ 32505855 (-)
G1282204 NA non-coding upstream 476664 32509013 ~ 32509254 (-)
G1282224 NA non-coding upstream 490969 32523318 ~ 32523550 (-)
G1281363 NA other downstream 152262 31865289 ~ 31866137 (-)
G1281361 NA other downstream 153763 31864234 ~ 31864636 (-)
dlgap1b LOC106590111 other downstream 2029883 29979175 ~ 30253803 (-)
G1278860 NA other downstream 2386631 29631025 ~ 29631768 (-)
LOC110489947 LOC106590135 other downstream 3314846 28701177 ~ 28724125 (-)
G1282159 LOC106590060 other upstream 443570 32475919 ~ 32478516 (-)
G1283257 NA other upstream 1230231 33262580 ~ 33266218 (-)
G1285645 NA other upstream 2952504 34984853 ~ 34985274 (-)
G1287067 NA other upstream 4126087 36158436 ~ 36158733 (-)
G1288280 NA other upstream 5206825 37239174 ~ 37239410 (-)

Expression


Co-expression Network