LOC110490012 (LOC106590058)


Basic Information

Item Value
gene id LOC110490012
gene name LOC106590058
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 32557738 ~ 32679847 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944301.1
AGGTTGCATATTTCTGGTTGCGGACCCCTGATTGTACACAGCAGCCAATGGTCCTTTAGTCTGATTGGCTCCTGGGCAAGATGACACTGTGGATGAAAGcgtggagagtgaaagagagagagagagcttgtggAAAGCAAAAGGGAgagagcctggagagagagagcgtggagagaaagagagagagagagacacagggagacaatGAGTGATAGAAGTAGAAACTTTACAAAGGACACCCAGTGTGGTTTAGAGGGAGCATGGACCCAAAGTAACTTTAGGGGAACTGATGCATTGCAGGCAGTTACTTCCACAACTTTACCAAGTGCAATTTAGtgagagtggagagaaaagaagagacgGATAAGAAAAGAAGAAAAAATTGCAAAAACTGTCTGAAAAGGACAGAGAAAGAAGCCATTTGAGGACCTTCCCAGGACGCAAGAGATAAAGGCACGACATCGGTGGGTCATTGGATCcctaaagaaaacacaaaacaatttGCTTTGTGGTTGAGTATCCATCATGGGAGAAAGACTTCACCACTATCTTGGGGGTGGTAGGCCTGTCTACACCCTACTACTCCCACTAGCTCTAGCCCTGCTGACCCTGTTGTGTGAGGCCCAGGGCCGTATGGATAGAGCCAGGTCACAGGAGGAAAGTAGAGCAGGGCTGTTGAGGAGGGTGAAAAGAGGCTGGGTATGGAACCAGTTCTTTGTGCTGGAGGAGTACACTGGACTGGAGCCGCTATACATTGGAAAGCTCCACTCAGACATGGACCTAGGGGATGGCTCAATCAAGTACATACTATCAGGAGACGGTGCCGGCACCACCTTCACCATTGATGACAGTACAGGAGACATCCATGCCATCAAGAGGCTGGACCGCGAGGTCAAGGCCCAGTACCTGCTGAAAGCCCAGgcctggaacagacagacagaccgaccccTAGAGCCTGAATCTGAGTTTATCGTTAAGATCCAGGACATCAATGACAATGAACCTAGGTTCCAGGATGGGCCCTACCAAGCCACCATACCTGAGATGTCAACCATCGGCACTGAGGTGATTCGGCTGACCGCTACAGATGCTGATGACCCTACATATGGTAACAGTGCCAGAGTGGTCTACAGCATCCTGCAAGGACAGCCATACTTCTCTGTAGAGCCCAAGACTGGCGAGGTGCGTGTGTCTCTGGCGGGCATGGACCGAGAGGTCAGAGAGATCTACTCCATCATCATCCAGGCCAAGGACATGGGAGGCCAGCTAGGGGGTCTGGCTGGAACCACTGTCGTCAACATCACCCTCAGCGACGTCAACGATAACCCACCCATGTTTGATCAGAAGCTGTATCAGATGAGCGTTCTGGAGTCGGCTCCCGTGGGGTCTGTTGTGGGTCGTATCCGGGCGAAGGATCGTGACATTGGCATCAACGCAGAGATGAGGTACAGCATCATTGACGGAGACGGGAGGGACACCTTCGACATCAGCACAGACCCCACCAACCTGTTTGGCATCATCACCATCAAAAAGCCTCTGAACTTTGAGAGCAAAGCAAGCTACACTCTGAAGATAGAAGGAGCCAACACACACCTGGACCACCGTTTTCTGGACAAGGGCCCGTTCAGCCATGTTACCATTGTTCACGTCAGCGTAGAGGATATAGACGAGCCCCCAGAGTTTAGCTCTGCTGCATACTACATAGAGGTCTCTGAAGAAGCAGAGATTGGCACAGTGTTCAAGACGGTCTCTGCCAGAGACCCTGATGCTTCCAATAACTCCATCAGGTATTCCATAGAGATGACCACTGACCTGGGGAAATATTTCTACATTGACATCACTTCCGGGGCGTTGATGACGGTGCTGGCGCTGGACAGAGAAGAGTTATCCTGGCATAACATCACCGTCCTGGCAATGGAGATGaATAATCCCAGTATGATCGGGAGTGTGTCTGTAGCTGTGAAGATTCTGGACGTGAATGATAACCCTCCATCGCTGACACACTATTTTGAAGCATTTGTCTGTGAGAGCGCCAAGGCTGGACAGCTGATTCAGACAGTGACAGCAATAGACCCAGATGATCCTCTGGGAGGTCAGCATTTCTACTACAGCCTGGCACCAGAGGCTGCTAACAACCCCAACTTCACCCTCAGAGACAACCAAGataacacagcatggaTCCTGACGCGGCGTGGGGGTTGGTCTCAGCAGGACCAGTCAGTCTACTACCTTCCAATCTTTATCTCAGATGGAGAGCTGCCGGTCCAGACCAGCACCAGCACCCTGACTATCCGTGTGTGTAGCTGCGATGTGGAGGGCAACGTTATGTCCTGTAATGCTGAGGCCTACCACCTACCGGCTAGTCTGAGCAGAGGGGCACTCATCGCCATACTGGCATGTATCTTCGTGATGCTTGTGATGATCTTGCTCATGTTGTCCCTCCGGAGCCACCGTAAGAAGCCCTACCTGCACGATGAGGAAGACAACGTCCACGAGAACATCGTCCGCTACGATGAcgaggggggtggagaggaggacactGAGGCCTTCGACATCGCTGCCATGTGGAACCCCCACGAGGCCCACCTAGTGGGGAAGCAACGTCAGGACATGCTGCCCGAAATCGAGAGCCTTTCACGCTACGTTCCCCTTGCATGTGTGGGCTGGCCAGGGAGCGTTTGTGTTGGTGGAGACAGCAACGTGCAGGGGTATGTGCTATCCAAGCTTCTGGAGGCGGATTTGGACCCCTGCGCCCCACCTTACGACTCCCTACAGACCTACGCCTATGAGGGGGAGGGATCGGTGGCTGAGTCCCTGAGCTCGCTGCAGTCTGGCTGCTCCAATACTGATCACGAGTATGATTATCTCAATGACTGGGGGCCCAGGTTTAAGAAACTGGCAGAGATGTACGGGGTTCTGGAGACAAACAACCCTCCCATGTGGTAGAGGGGAGGAAGGAACAAGAGACTCACCCCTATATACACACATCTTATAGGAAGAAGAGACTGAAACATAGAGAGACTATGGCTGAAACGGAGACATGTAGatagacaggaacagagagagagagaaatagagagaatgaATTTGAAAGGTGTGTTCGCCGTAGAACTGCAGAATTTGCAATAGCACCACTGCAGCATCGCCTCTTCTCTATAGCCTTAGAGCTGGGTAGACTCAACCCTGAGCTGGGTTTCCTCCTAGCTGTGTGGCTGCCATCACCACCCTTCCCCAACTCCAAGAGAGGCTTGAGAGTAgcctggactgactgactgacagacagctaGCATCACAAGGCCCTCAAAGCAAAGGGCTTCAAAGCAACACGTTAGTTAACTCTATTGGCCGACCCAGGCCCTAGCCACAGGCGCCAGCAGCTCTCTGGTCCAAAGGGTCCCATTCCCCTCAGATGAACACAAGAGAGGGGAATGAGGGGAAAACAAGGGACTCAACATACTTAGCCTTACCTTCCTGCACACACTTACGCAGGACACAAACAAACTCTGAAATGCTGACTTCTTTTTTGTTGGTTTGTTTTGACAATATTTCGGTTAAGACTTTGCTTTTTGTATTCCAAGCCACTGACACAAGGGAAAAAAAGGAAGAGTAAGATACATTTTTGATGACCATTTTGATTTGAGAACTGCAATTTTTTCCATTAAGGGTAACTTCAATATGTGGCTGTCTcttattaatttatttattttttcatgtgCTGTATTTATATTTCTTATAACTTATTTTTGGGAATCAAACAAACACTGGTTTGATGTTATCCCAAGGTTGTGGGTTCGGCATAAAATATGTTCAAATATGTTCAAGAGTTATGATGTAACATAAATGTTTCAATGGCGTCTAATTACAATTCTGTGTTTCGAAGACAATGTTTCTCCCGGCATTTCTCAGTGTCTTGTTTCAGACATAGTAAGGGAGATGGAAACTCTGTAATCCTATTTGGATTTTAAGATTATTTGTTAAATGTATCGATTCATATTTTGTTACTTTGAACCCTTTGTTGTTTTGCTGCTGGTTAGGAGCATAAAGCATGATCATGCATTCATCAGGAAATGTGTGTCCCCCAAATTGCACACAAtgcaaagtagtgcactatataggaaatagggtgcattTTGGGACGCAAACACAATCTTTAAACTCTTGTTTTGAAATAAACTGTCCATGATACCACAGCAagactgagggacattacagTATCTGTATTTGAAATGAAGGATGGCCAGTTACcgtaaatgttttactcatcaTTATAAACATAGCTGGATGAGTAAAACCAGGGGTTGTACGATATGGTAAAAAGCATTTCATCAGGGTATCAGCTTAGGGGTGTAGTCCAACTCTGCCATACATTGTTGCTTGATCTCAACCCTCGCATCCCGTCCCATAGACTTTGATAACTTTGATAATCTGCTTCTTCAAGTGCCATATGtaaagaagaagaaaatgtacttcAGCAAAACGACGCCAAATAAACAAAGGGACTTCTTTGTCAAAGATGATGTGAAATAATAGGAGGACATTTTGATCATTTTTGATTGGGCGGACTCGACTTGAAACGTGTGGTGTCAGTTATGCTACAGTATGTGGTATTTGAATGTAGATATTTGTTGTATACTTGGtaataaaataagaaaataaaacattttgctgTCATCAA
>XM_036944302.1
agagagagagagagagagcaggcaggcaggcaggagcgCAGAGGTAGAGCAGGGAGCTGAGCTGATCACGAGGTGTCAGACTTATTCTTTCCATCCGTCTCCTCTATCCTCTTCactcacttcttcttcttcttctgagtGCACCAGACCTTTCACCAGAGCTGTGCGATAAGCGGGAAGCCCACGTTTTGAAAAAAAGAACTCCAGACAAATAGATAGGCAGACAAAAGAAGAATGTAAATGAAtggaacgacagagacggagaaaaATAAGTTAACTTCTGAAGACTCATCCAGTACTGGAGGGGCTGTGGTGTGCAACACCAGCCATTTGAGGACCTTCCCAGGACGCAAGAGATAAAGGCACGACATCGGTGGGTCATTGGATCcctaaagaaaacacaaaacaatttGCTTTGTGGTTGAGTATCCATCATGGGAGAAAGACTTCACCACTATCTTGGGGGTGGTAGGCCTGTCTACACCCTACTACTCCCACTAGCTCTAGCCCTGCTGACCCTGTTGTGTGAGGCCCAGGGCCGTATGGATAGAGCCAGGTCACAGGAGGAAAGTAGAGCAGGGCTGTTGAGGAGGGTGAAAAGAGGCTGGGTATGGAACCAGTTCTTTGTGCTGGAGGAGTACACTGGACTGGAGCCGCTATACATTGGAAAGCTCCACTCAGACATGGACCTAGGGGATGGCTCAATCAAGTACATACTATCAGGAGACGGTGCCGGCACCACCTTCACCATTGATGACAGTACAGGAGACATCCATGCCATCAAGAGGCTGGACCGCGAGGTCAAGGCCCAGTACCTGCTGAAAGCCCAGgcctggaacagacagacagaccgaccccTAGAGCCTGAATCTGAGTTTATCGTTAAGATCCAGGACATCAATGACAATGAACCTAGGTTCCAGGATGGGCCCTACCAAGCCACCATACCTGAGATGTCAACCATCGGCACTGAGGTGATTCGGCTGACCGCTACAGATGCTGATGACCCTACATATGGTAACAGTGCCAGAGTGGTCTACAGCATCCTGCAAGGACAGCCATACTTCTCTGTAGAGCCCAAGACTGGCGAGGTGCGTGTGTCTCTGGCGGGCATGGACCGAGAGGTCAGAGAGATCTACTCCATCATCATCCAGGCCAAGGACATGGGAGGCCAGCTAGGGGGTCTGGCTGGAACCACTGTCGTCAACATCACCCTCAGCGACGTCAACGATAACCCACCCATGTTTGATCAGAAGCTGTATCAGATGAGCGTTCTGGAGTCGGCTCCCGTGGGGTCTGTTGTGGGTCGTATCCGGGCGAAGGATCGTGACATTGGCATCAACGCAGAGATGAGGTACAGCATCATTGACGGAGACGGGAGGGACACCTTCGACATCAGCACAGACCCCACCAACCTGTTTGGCATCATCACCATCAAAAAGCCTCTGAACTTTGAGAGCAAAGCAAGCTACACTCTGAAGATAGAAGGAGCCAACACACACCTGGACCACCGTTTTCTGGACAAGGGCCCGTTCAGCCATGTTACCATTGTTCACGTCAGCGTAGAGGATATAGACGAGCCCCCAGAGTTTAGCTCTGCTGCATACTACATAGAGGTCTCTGAAGAAGCAGAGATTGGCACAGTGTTCAAGACGGTCTCTGCCAGAGACCCTGATGCTTCCAATAACTCCATCAGGTATTCCATAGAGATGACCACTGACCTGGGGAAATATTTCTACATTGACATCACTTCCGGGGCGTTGATGACGGTGCTGGCGCTGGACAGAGAAGAGTTATCCTGGCATAACATCACCGTCCTGGCAATGGAGATGaATAATCCCAGTATGATCGGGAGTGTGTCTGTAGCTGTGAAGATTCTGGACGTGAATGATAACCCTCCATCGCTGACACACTATTTTGAAGCATTTGTCTGTGAGAGCGCCAAGGCTGGACAGCTGATTCAGACAGTGACAGCAATAGACCCAGATGATCCTCTGGGAGGTCAGCATTTCTACTACAGCCTGGCACCAGAGGCTGCTAACAACCCCAACTTCACCCTCAGAGACAACCAAGataacacagcatggaTCCTGACGCGGCGTGGGGGTTGGTCTCAGCAGGACCAGTCAGTCTACTACCTTCCAATCTTTATCTCAGATGGAGAGCTGCCGGTCCAGACCAGCACCAGCACCCTGACTATCCGTGTGTGTAGCTGCGATGTGGAGGGCAACGTTATGTCCTGTAATGCTGAGGCCTACCACCTACCGGCTAGTCTGAGCAGAGGGGCACTCATCGCCATACTGGCATGTATCTTCGTGATGCTTGTGATGATCTTGCTCATGTTGTCCCTCCGGAGCCACCGTAAGAAGCCCTACCTGCACGATGAGGAAGACAACGTCCACGAGAACATCGTCCGCTACGATGAcgaggggggtggagaggaggacactGAGGCCTTCGACATCGCTGCCATGTGGAACCCCCACGAGGCCCACCTAGTGGGGAAGCAACGTCAGGACATGCTGCCCGAAATCGAGAGCCTTTCACGCTACGTTCCCCTTGCATGTGTGGGCTGGCCAGGGAGCGTTTGTGTTGGTGGAGACAGCAACGTGCAGGGGTATGTGCTATCCAAGCTTCTGGAGGCGGATTTGGACCCCTGCGCCCCACCTTACGACTCCCTACAGACCTACGCCTATGAGGGGGAGGGATCGGTGGCTGAGTCCCTGAGCTCGCTGCAGTCTGGCTGCTCCAATACTGATCACGAGTATGATTATCTCAATGACTGGGGGCCCAGGTTTAAGAAACTGGCAGAGATGTACGGGGTTCTGGAGACAAACAACCCTCCCATGTGGTAGAGGGGAGGAAGGAACAAGAGACTCACCCCTATATACACACATCTTATAGGAAGAAGAGACTGAAACATAGAGAGACTATGGCTGAAACGGAGACATGTAGatagacaggaacagagagagagagaaatagagagaatgaATTTGAAAGGTGTGTTCGCCGTAGAACTGCAGAATTTGCAATAGCACCACTGCAGCATCGCCTCTTCTCTATAGCCTTAGAGCTGGGTAGACTCAACCCTGAGCTGGGTTTCCTCCTAGCTGTGTGGCTGCCATCACCACCCTTCCCCAACTCCAAGAGAGGCTTGAGAGTAgcctggactgactgactgacagacagctaGCATCACAAGGCCCTCAAAGCAAAGGGCTTCAAAGCAACACGTTAGTTAACTCTATTGGCCGACCCAGGCCCTAGCCACAGGCGCCAGCAGCTCTCTGGTCCAAAGGGTCCCATTCCCCTCAGATGAACACAAGAGAGGGGAATGAGGGGAAAACAAGGGACTCAACATACTTAGCCTTACCTTCCTGCACACACTTACGCAGGACACAAACAAACTCTGAAATGCTGACTTCTTTTTTGTTGGTTTGTTTTGACAATATTTCGGTTAAGACTTTGCTTTTTGTATTCCAAGCCACTGACACAAGGGAAAAAAAGGAAGAGTAAGATACATTTTTGATGACCATTTTGATTTGAGAACTGCAATTTTTTCCATTAAGGGTAACTTCAATATGTGGCTGTCTcttattaatttatttattttttcatgtgCTGTATTTATATTTCTTATAACTTATTTTTGGGAATCAAACAAACACTGGTTTGATGTTATCCCAAGGTTGTGGGTTCGGCATAAAATATGTTCAAATATGTTCAAGAGTTATGATGTAACATAAATGTTTCAATGGCGTCTAATTACAATTCTGTGTTTCGAAGACAATGTTTCTCCCGGCATTTCTCAGTGTCTTGTTTCAGACATAGTAAGGGAGATGGAAACTCTGTAATCCTATTTGGATTTTAAGATTATTTGTTAAATGTATCGATTCATATTTTGTTACTTTGAACCCTTTGTTGTTTTGCTGCTGGTTAGGAGCATAAAGCATGATCATGCATTCATCAGGAAATGTGTGTCCCCCAAATTGCACACAAtgcaaagtagtgcactatataggaaatagggtgcattTTGGGACGCAAACACAATCTTTAAACTCTTGTTTTGAAATAAACTGTCCATGATACCACAGCAagactgagggacattacagTATCTGTATTTGAAATGAAGGATGGCCAGTTACcgtaaatgttttactcatcaTTATAAACATAGCTGGATGAGTAAAACCAGGGGTTGTACGATATGGTAAAAAGCATTTCATCAGGGTATCAGCTTAGGGGTGTAGTCCAACTCTGCCATACATTGTTGCTTGATCTCAACCCTCGCATCCCGTCCCATAGACTTTGATAACTTTGATAATCTGCTTCTTCAAGTGCCATATGtaaagaagaagaaaatgtacttcAGCAAAACGACGCCAAATAAACAAAGGGACTTCTTTGTCAAAGATGATGTGAAATAATAGGAGGACATTTTGATCATTTTTGATTGGGCGGACTCGACTTGAAACGTGTGGTGTCAGTTATGCTACAGTATGTGGTATTTGAATGTAGATATTTGTTGTATACTTGGtaataaaataagaaaataaaacattttgctgTCATCAA

Function

NR:

description
cadherin-20-like

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K06807 CDH20; cadherin 20, type 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944301.1 False 4675 mRNA 0.48 12 32557738 32589851
XM_036944302.1 True 4584 mRNA 0.48 12 32557738 32679847

Neighbor

gene id symbol gene type direction distance location
sugct LOC106590081 coding downstream 271518 32120931 ~ 32286220 (-)
LOC110490834 NA coding downstream 525389 32018399 ~ 32032349 (-)
cidea LOC106590084 coding downstream 656351 31887323 ~ 31901387 (-)
tubb6 LOC106590085 coding downstream 673223 31871514 ~ 31884515 (-)
dipk1c LOC106590086 coding downstream 711726 31824422 ~ 31846012 (-)
LOC110490014 LOC106590055 coding upstream 587157 33267004 ~ 33348714 (-)
LOC118938795 NA coding upstream 611382 33291229 ~ 33294593 (-)
LOC110516899 LOC106595224 coding upstream 1224097 33903944 ~ 33906267 (-)
LOC118938915 NA coding upstream 2231388 34911235 ~ 34912329 (-)
LOC110490023 LOC106590042 coding upstream 3358931 36038778 ~ 36142327 (-)
G1282258 NA non-coding downstream 4411 32553101 ~ 32553327 (-)
G1282246 NA non-coding downstream 17299 32540202 ~ 32540439 (-)
G1282224 NA non-coding downstream 34188 32523318 ~ 32523550 (-)
G1282204 NA non-coding downstream 48484 32509013 ~ 32509254 (-)
G1282197 NA non-coding downstream 51883 32505636 ~ 32505855 (-)
G1282687 NA non-coding upstream 194727 32874574 ~ 32874831 (-)
G1282688 NA non-coding upstream 195634 32875481 ~ 32875733 (-)
G1282695 NA non-coding upstream 198471 32878318 ~ 32878573 (-)
G1282712 NA non-coding upstream 219778 32899625 ~ 32905832 (-)
G1282735 NA non-coding upstream 239155 32919002 ~ 32919373 (-)
G1282159 LOC106590060 other downstream 79222 32475919 ~ 32478516 (-)
G1281363 NA other downstream 691601 31865289 ~ 31866137 (-)
G1281361 NA other downstream 693102 31864234 ~ 31864636 (-)
dlgap1b LOC106590111 other downstream 2569222 29979175 ~ 30253803 (-)
G1278860 NA other downstream 2925970 29631025 ~ 29631768 (-)
G1283257 NA other upstream 582733 33262580 ~ 33266218 (-)
G1285645 NA other upstream 2305006 34984853 ~ 34985274 (-)
G1287067 NA other upstream 3478589 36158436 ~ 36158733 (-)
G1288280 NA other upstream 4559327 37239174 ~ 37239410 (-)
G1288297 NA other upstream 4581168 37261015 ~ 37261648 (-)

Expression


Co-expression Network