LOC110490013 (LOC106590056)


Basic Information

Item Value
gene id LOC110490013
gene name LOC106590056
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 33014206 ~ 33016968 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563090.2
tctgcccccccctctctctctctcgctttctttctttctcattctTCCTGGAGGCTGCCAGTTGATAGCAGTGTAGAGAGAGTGCCAGGGGCTAAGGAAGGCTAACATCAGCAGATGTCTGAAGAAAATGACTCTGCTTGACCAGTTTGGGGGCTGGATGAGGCAAAGAAGAGGATCAAACATTGGGATTCATTCTGCTTTCCACCACCTGCCGGGCGCCTGACTCTGAGCATGGAAGACAACAGAACAAGAGGACCATTGAGCACGCAGCACTGAGAATTTCGGAGTATACTGATGGACTTAACTAGGTGGATTAATAGCCCTAAACAAGGCTAGAATGGTGACATTAACATTTTACTAAAAGGCTTAGAGAACCAACTAAGAGAACTACCAACTACACAATGAATGCCACAGAATACCAGGGTTCGATCTCTGTGAGCTATAACAGGAACTCCAGCACTGCTGGGACTCTGGTATCCGTCAACAAAGACTCAGAGGGCATTGGTCTCAATGACTCTTCGACAGGATGTTACGACCAGCTCCTCATCTCCACCGAGGTCTTCCTCACACTGGGGATTGTCAGTTTATTAGAGAACATCCTGGTGATTGCCGCTATCATCAAGAACAAGAACCTCCACTCTCCCATGTACTTCTTCATCTGTTCTCTGGCTGTGGCCGACATGCTGGTCAGCGTCTCCAATGCCTCCGAGACGATCGTCATAGCCCTGATCAACAGCGGCAGCCTGAGCATCTCTGGGTCACTGATAAAAAGCATGGACAATGTGTTCGACTCCATGATCTGTAGCTCACTGCTGGCATCAATCTGTAGTCTCTTGGCAATCGCCATAGACCGCTACATCACCATATTCTATGCACTGCACTACCATAACATTGTGACGGTAAAAAGAGCGCTGGCGGTGATCTCCCTCATATGGTTGTGTTGCGTGGTGTCGGGCGTGCTCTTCATCATCTACTCTGAGAGCACCACTGTCCTCATCTGCCTTATCACCATGTTCTTCACCATGCTGGCACTCATGGCCTCGCTCTACATCCACATGTTCCTCCTAGCCCGGCTACACATGAAGAGGATCGCCATGCTGCCTGGGAACGCGCCCATCCGCCAGCATGCCAACATGAAGGGTGCCATCACCCTCACCATCCTCCTAGGTGTGTTCGTAGTGTGCTGGGCTCCCTTcttcctccacctcatcctcATTATCTCCTGCCCTAGGAATCCCTACTGTGCCTGCTTCATGTCGCACTTCAACATGTACCTCATCCTCATCATGTGTAACTCGGTCATCGACCCACTCATCTACGCACTCCGCAGCCAGGAGATGAGGAAGACCTTCAAGGAGATCTTCTGCTGGTACAGCTTgccaaacctgtgtgtgtgtgagctcccTGGGAAATAGTGACCCTTTGAACAGCTGACAACTACTGAGGTGGCATCTGCCTTTGTCTCCTCACATGAAAGAGACAGCTGAGAGGTTGTGTACAGCATGAGGTCTTTGATGCTGATGCTGATTGTGATTGGTGAGGACTGATTTGCCCTCTTTCTGCCCGTGCTCCAGGACATGGCTGTAAATTCTTCAAAAGTAGTTCCTCTTAACCGGTTCTGGTTACCATGGCTCGGGTAGACAAAGAGAAGGTTGGTTTACATACAAACTGTaaaaacagaacacaacacaaaacCCATTCGTTCTCTACAGCACAATCAGGTATCTTTTTGTTTGTCTCGAACAATTCTGTTTTTAAAGTAACTGACCCATAATGTGAGAagatatgatgatgatgatatgagAAAGATATCTATTTAAAATAAGTTAGATATTTTAATATTTAAAACATATTTGAAGTACTGAGTGGCAGCTGCCTACACACTACGGTCTTTTTTCAAGGATAACATACGAAAGTAGTGCTCACGAACCAAAACTGGTCACCGAAAATTGTGCACAGtcgtgtactacgtcatccaatTCGTATGATTATATTAGGAATTCAAATGTTCTACGATATATTTGTAAGTGCTTAAGATCCAGGACTGCATCTTTAAATGGCACACTATATGACAGTGTACGTTTATTTCATACTCTGAACGATTGAAAGTGGAAAGCTTAAAAAATATAATCTACCTCCCGGagcaaacagtaaaaaaaaaaactaaagtcTTGCACCGTGCTTTGTAGACTAAATGTCAGAGGATTTTCCTTTAGCCTATCTTACTAGGCTGACAACTACAACACATAGTGGCTCTAaattgaaaaaaaacaacaacaaagtgaAGCACTAATTGAAATGATTTCTGTTGAGAATAAACCCAGTCGAGAGAGCTACATCTCATTTGATTAAAAGCTAAAAGCTACCTATGCtgcttgaaaaaaaaaacagaccttGTGTGCATTTATAAAGTCACCATTACATGACACAGACACACTTTCATCTATATTTTTAATTCATCCTCAATATGCGTTCATCAAGTGCTTGGATAATTCTTTGCAGACTTATTTTACAGTGTACATGTAACTTCTTATGTATGAATTCTATAATttcctaaccccaaccctaattcTAGATTCTATTGATATTGTATTTTGCTCTAAAATGTAAACGATGTGAGTATGTGCTTTTGTGTTCTTATCATGTCGCTTGTTGTTCTGGCCTTAAACATGCTGCACTGTGATGTAAAATAACAATTTCAATGCCAGtgttatatatacatattttaataAAATCATGTGGAAAGCCTATT
>TU1464729
tactacgtcatccaatTCGTATGATTATATTAGGAATTCAAATGTTCTACGATATATTTGTAAGTGCTTAAGATCCAGGACTGCATCTTTAAATGGCACACTATATGACAGTGTACGTTTATTTCATACTCTGAACGATTGAAAGTGGAAAGCTTAAAAAATATAATCTACCTCCCGGagcaaacagtaaaaaaaaaaactaaagtcTTGCACCGTGCTTTGTAGACTAAATGTCAGAGGATTTTCCTTTAGCCTATCTTACTAGGCTGACAACTACAACACATAGTGGCTCTAaattgaaaaaaaacaacaacaaagtgaAGCACTAATTGAAATGATTTCTGTTGAGAATAAACCCAGTCGAGAGAGCTACATCTCATTTGATTAAAAGCTAAAAGCTACCTATGCtgcttgaaaaaaaaaacagaccttGTGTGCATTTATAAAGTCACCATTACATGACACAGACACACTTTCATCTATATTTTTAATTCATCCTCAATATGCGTTCATCAAGTGCTTGGATAATTCTTTGCAGACTTATTTTACAGTGTACATGTAACTTCTTATGTATGAATTCTATAATttcctaaccccaaccctaattcTAGATTCTATTGATATTGTATTTTGCTCTAAAATGTAAACGATGTGAGTATGTGCTTTTGTGTTCTTATCATGTCGCTTGTTGTTCTGGCCTTAAACATGCTGCACTGTGATGTAAAATAACAATTTCAATGCCAGtgttatatatacatattttaataAAATCATGTGGAAAGCCTATTGTTTACAGAAC

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0040008 regulation of growth biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004977 melanocortin receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563090.2 False 2752 mRNA 0.43 1 33014206 33016957
TU1464729 True 799 lncRNA 0.33 1 33016170 33016968

Neighbor

gene id symbol gene type direction distance location
LOC118938962 NA coding upstream 81356 32932796 ~ 32932850 (+)
LOC110490011 LOC106590060 coding upstream 534217 32350805 ~ 32480547 (+)
LOC118938888 NA coding upstream 1002461 32008121 ~ 32011745 (+)
inhbaa LOC106590082 coding upstream 1040195 31962835 ~ 31974011 (+)
LOC110490007 LOC106590083 coding upstream 1089727 31910786 ~ 31924479 (+)
LOC110490956 drosha coding downstream 82924 33099881 ~ 33262044 (+)
LOC110490016 LOC106590054 coding downstream 1260064 34277021 ~ 34325910 (+)
LOC110490017 LOC106590053 coding downstream 1606957 34623914 ~ 34822015 (+)
LOC110490018 LOC106578564 coding downstream 1975466 34992423 ~ 35361339 (+)
LOC118938916 NA coding downstream 2599867 35616824 ~ 35619520 (+)
G1282845 NA non-coding upstream 7817 33006175 ~ 33006389 (+)
G1282807 NA non-coding upstream 38590 32975231 ~ 32975616 (+)
G1282798 NA non-coding upstream 42299 32971705 ~ 32971907 (+)
G1282791 NA non-coding upstream 45438 32968498 ~ 32968768 (+)
G1282778 NA non-coding upstream 52579 32961425 ~ 32961627 (+)
G1282871 NA non-coding downstream 15516 33032473 ~ 33032808 (+)
G1283020 NA non-coding downstream 120962 33137919 ~ 33138178 (+)
G1283025 NA non-coding downstream 123487 33140444 ~ 33140718 (+)
G1283037 NA non-coding downstream 130055 33147012 ~ 33147224 (+)
G1283041 NA non-coding downstream 131432 33148389 ~ 33148910 (+)
G1282302 NA other upstream 316170 32687558 ~ 32698036 (+)
G1281462 NA other upstream 1017693 31996167 ~ 31996513 (+)
G1279833 NA other upstream 2066876 30944171 ~ 30947330 (+)
htr5ab htr5a other upstream 2606189 30395817 ~ 30416375 (+)
G1279349 NA other upstream 2710787 30303033 ~ 30303419 (+)
G1284354 NA other downstream 1094850 34111807 ~ 34112271 (+)
G1286648 LOC106590042 other downstream 3018626 36035583 ~ 36093396 (+)
G1287489 LOC106590045 other downstream 3492121 36509078 ~ 36510512 (+)
G1289491 NA other downstream 5166479 38183436 ~ 38184003 (+)
G1289710 NA other downstream 5577923 38594880 ~ 38600241 (+)

Expression


Co-expression Network