LOC110490014 (LOC106590055)


Basic Information

Item Value
gene id LOC110490014
gene name LOC106590055
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 33267004 ~ 33348714 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563091.2
TCATTATTTCTGTCGGACGATTTCTCCCCCTGCCCTGTATCAGGGACTTGTGAATGACAGCCAATCGGAGGCTGTGCCCTTTCCTTCAGCCTCcctgacatacacacagagaaGTGATGCTGCCTACGCGAAAAAGCTAAACGCAGTTGAGGTACAGCCTTGAAGCTCTTTTGGAACTGCTGCAGTGAACGAAAGGATACACTTCGCTCTCATCTCACCAACTACCCCTTCGCTATCGTAGGATTTCTTTAACTGAATAAGAACTCCGGTGGCAGATACTGGCTGGACCTGGGCCCCAATGACAGACTGACAGCCCGTGCTGCTACTGCGGACCTACACCCAGACCTGGAGGAGTGACCCAATGACGAAACTTCTGACTAAAGTCCACTGACCACTTCACACTAACACCCAGAGGGAGTAGAACATCTAGCTGAGTGAAGCCATGTTGAGAGGAAGAACTGTACTTCTCCTGCTGGTCCTCTGGGCATACCTGTGTTCCCATGGGGACGGACTGCGAGCCCTGAGGAGGACTACAGGGGGGAGGCGGGGTGGCGCAGGGGTGGGGTTGACGCTGATGGGACAGGACGCTAATGGAGTGCCTCTGAGACGCTCCAAACGAGGATGGATGTGGAACCAGTTCTTCCTACTGGAGGAGTACACAGGGATGGATCACCAGTATGTTGGCAAGCTCCACTCAGACGGGGACAGGGGTGACGGTAGCATACGATACGTCCTGACCGGTGATGGAGCCGGTAGTCTGTTCGTCATCGATGAGAACTCTGGGGATATCCATGCCACTAAGAGATTGGACCGGGAGGAGAAGGCCTACTACACGCTCCGGGCCAAGGCCGTCAACAGAATCACTAACACCTCTCTAGAGGGAGAGTCAGAGTTTATCATCAAGATTCATGACATTAACGACAATGAGCCCAAGTTTACCAAGGACCCTTACTTCACAGAGGTACCTGAGATGTCCCCACTGGGCACGGTGGTGACGCAGGTGACCGCTACAGACGCTGATGACCCTACATATGGTAACAGTGCCAGGGTGGTCTACAGCATCCTGCAAGGACAGCCATACTTCTCTGTAGAGCCCAACACAGGTGTGATCAAGACAGCCCTGCCTAACATGGACAGGGAGACCAAGGAGAACTATGTGGTTGTGATCCAGGCTAAAGACATGGCTGGACAGATGGGTGGGTTATCAGGGACCACCACAGTCAGCATTACCCTCTCTGATGTCAATGACAACCCACCACGCTTCCCAAAGAGTCTGTATGAGTTCAAAGCTCCCGAGTCGACAGAACCGGGCTCGACAGTGGCCGTGCTGCGAGCTACGGACGCTGACATCGGCAGGAACGCTGAGATGAACTACCGAATCACCAGCAGCGACGGCCCCTCCATGTTCGACATCTCAACCAATAGGAGCACACAGGATGGTGTCATCACCCTCAGGAAGtCTCTGGACTTTGAGAGGAAACGGTCCTACACTCTAAGGATTCAGGTGGAGAACTCCAACCCTGACCCTCGGTTCCTGCGCTATGCGGCAACCACGGACGGGGCGACGGTCAAACTGATCGTGGAGGATGTAGACGAGCCGCCCGTGTTCGACCGGGTCGGCTATGTCATGGAGGTCAAAGAAGACGTGGCAGTAGGCACAATCATCGGATCAGTCAGCGCCACAGATCCAGACAGCAGCCGCAGTCCCGTCAGGTACTCTATTGACCGGCGTACAGACATGGACAGGGTGCTCAACGTGCACCCAGGTAACGGCTCAGTGTTCATGCTGAGGACTCTGGACAGAGAGGACATCGCCTGGCACAATGTCTCTGTTATTGCCACTGAGTTCAACAACCCACGGCTGATGAGTCGTGTACCAGTCTATGTTAGAGTACTGGACGTTAATGACAACGCTCCTACGTTCGCCACTTACTACGAGACATTTGTCTGTGAAAACGCCAAGGCTAACCAGAGGATTCAGACAGTAAGTGCTGCAGACGCTGACGAGCCTATTGGTGGACACAGGTTCTTCTTTAGTCTGGCGCACGAGGCTTCTGTGAAAGCCAACTTCACCGTCAGAGACAATAAAGACAACACGGCAGGTATCCTGACCAGACGAAACAGCTACAGCCGGCTACAGAGGAGTAACTATCTGGTTCCCGTGGTGATCTCGGACAGCGACTTCCCCATGCAGAGCAGCACCAACACCCTGACGGTGCACGTTTGCACCTGCGACCGCGAGGGGAACATGCAGCTGTGTAACCAGGAAGCTCTGGTCCTCACCGCAGGCCTCAGCACTGGAGCCCTCATGGCCATCATCTTCTGTGTCCTCATACTGCTCATGATTGTGGTGCTGTTCGCTGCCCTGAGGAGGCAGCAGAGGAAGAAGGAGCCTCTGATCATCTCCAAAGAGGATGTGAGAGACAACGTTGTCAGCTACAACGATGAAGGGGGCGGAGAGGAGGACACCCAGGCCTTTGATATCGGCACGCTGCGCAACCCAGAGGCCACAGAGGAGAGCAAACAGCGCAGGGACATTAAGCCCGAGACCCTGCAACCTCCCATCCGTCGGACTGTGATCCTTCCCCCGGCCCACAGGGACAACGCGGACGTCAGGAACTTCATAAACCAAAGGCTTCAGGAAAACGACCAGGACCCCACCGCACCGCCCTACGACTCCCTGGCCACCTACGCCTACGAAGGGAGCGGCTCGGTTGCTGAGTCCCTTAGCTCCCTGGGCTCCATGACCATAGAGGGAGACCAGGACTATAACTACCTGAGCGAGTGGGGACCCAGGTTTAAGAAACTGGCTGACTTGTACGGGGGAGAGGACAGTGACAGCTGCAGGGATTCCTAATGAGAGAGAAGGGGCTCGTAAGAGGGGAGCTAAAGGAAAAcatacaacaaacaaacaaacactcgCACACTAGCGAAAGTGAACTTAACTCCTGGTACTTTGTGAAAGTGGCAAACAATAGAACAAAACAAAGAGGACACAAACAGACACGAGGCAGTGTCTTACCGTCGTTGATCACCGTTGATGTTTGACCTCTCTGGAGGACTAGGAGGAAGAAGATAAGCTATCCTGTCAGTATTTAGtggtctttctctttctctgctaGGCAGCAGGGGACTCCTGAGGAAAAGAGTTGTTGTACTTTACTCTGTACACCAGGCCCACATACACAGTATCTCTATATACAAACAAACTTCTACTCTTTTCTTTTTCAAAAGCTTCCTGCAATGGAGGGAGTAACAGCAAGCGGTTTTGTGGTGGACTTGATAGACAGACAACGCCTATTCATTTTTCAGTGTTTCTGGGACAAAAAAAAAGCTGCATTTTGTGAGTTCTATCGTAGCTTGTGTGTGCGTATCCGTAAATCGATACGATACATTGTACAGTTATGTTTTGTTTTCAGGCTTCTAGCTTCCCATCCACCCTCTTATA
>TU1465157
GAAAAAGCTAAACGCAGTTGAGGTACAGCCTTGAAGCTCTTTTGGAACTGCTGCAGTGAACGAAAGGATACACTTCGCTCTCATCTCACCAACTACCCCTTCGCTATCGTAGGATTTCTTTAACTGAATAAGAACTCCGGTGGCAGATACTGGCTGGACCTGGGCCCCAATGACAGACTGACAGCCCGTGCTGCTACTGCGGACCTACACCCAGACCTGGAGGAGTGACCCAATGACGAAACTTCTGACTAAAGTCCACTGACCACTTCACACTAACACCCAGAGGGAGTAGAACATCTAGCTGAGTGAAGCCATGTTGAGAGGAAGAACTGTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563091.2 False 3448 mRNA 0.53 12 33267004 33348714
TU1465157 True 335 lncRNA 0.50 2 33304070 33348585

Neighbor

gene id symbol gene type direction distance location
LOC110490012 LOC106590058 coding downstream 587157 32557738 ~ 32679847 (-)
sugct LOC106590081 coding downstream 980784 32120931 ~ 32286220 (-)
LOC110490834 NA coding downstream 1234655 32018399 ~ 32032349 (-)
cidea LOC106590084 coding downstream 1365617 31887323 ~ 31901387 (-)
tubb6 LOC106590085 coding downstream 1382489 31871514 ~ 31884515 (-)
LOC110516899 LOC106595224 coding upstream 555230 33903944 ~ 33906267 (-)
LOC118938915 NA coding upstream 1562521 34911235 ~ 34912329 (-)
LOC110490023 LOC106590042 coding upstream 2690064 36038778 ~ 36142327 (-)
LOC110490717 LOC106590044 coding upstream 2966724 36315438 ~ 36462331 (-)
LOC110490025 LOC106590045 coding upstream 3155194 36503908 ~ 36545570 (-)
G1283139 NA non-coding downstream 35427 33231377 ~ 33231577 (-)
G1283131 NA non-coding downstream 41297 33225487 ~ 33225707 (-)
G1283061 NA non-coding downstream 106206 33160017 ~ 33160798 (-)
G1283044 NA non-coding downstream 115551 33151230 ~ 33151453 (-)
G1283033 NA non-coding downstream 121419 33145351 ~ 33145585 (-)
G1283328 NA non-coding upstream 8068 33356782 ~ 33357491 (-)
G1283330 NA non-coding upstream 9559 33358273 ~ 33358520 (-)
G1283345 NA non-coding upstream 17939 33366653 ~ 33366877 (-)
G1283376 NA non-coding upstream 37309 33386023 ~ 33386330 (-)
G1283388 NA non-coding upstream 45048 33393762 ~ 33394091 (-)
G1283257 NA other downstream 786 33262580 ~ 33266218 (-)
G1282159 LOC106590060 other downstream 788488 32475919 ~ 32478516 (-)
G1281363 NA other downstream 1400867 31865289 ~ 31866137 (-)
G1281361 NA other downstream 1402368 31864234 ~ 31864636 (-)
dlgap1b LOC106590111 other downstream 3278488 29979175 ~ 30253803 (-)
G1285645 NA other upstream 1636139 34984853 ~ 34985274 (-)
G1287067 NA other upstream 2809722 36158436 ~ 36158733 (-)
G1288280 NA other upstream 3890460 37239174 ~ 37239410 (-)
G1288297 NA other upstream 3912301 37261015 ~ 37261648 (-)
G1289323 LOC106590025 other upstream 4661479 38010193 ~ 38011916 (-)
LOC118938795 NA coding downstream 9477 33291229 ~ 33294593 (-)

Expression


Co-expression Network