LOC110516899 (LOC106595224)


Basic Information

Item Value
gene id LOC110516899
gene name LOC106595224
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 33903944 ~ 33906267 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945533.1
atgAGGACTATGATGAggacgatgatgaggaggaatACGACCCCGCCGAGCGCGAGCCCTCCGCCTACGACGCCTCGCAGTCCTTGTTTGAGCGCGGCTCAGGTCCTGGAACAGATATCCTCCAGTGTCGACCAAGAAGACGAGGAAGACTACATGGAATCCGAAGAGGAGGACGTTTCGGAAGATGAAGACGGTGAGGAATACAACCCCGAGCGTGATGcggacgacgacgacgacgacgactcGGCCTCACGGTCGTGCTCCTCTTcggaggaagagcgagagggagagcgagagggagacacgGCCGCTGCccgagagcgagacacagccagagagccagagcgagacagagaggacgCGGCGGCAGCCGCCCGAGCCCAAAGGGAGACGTTGCTGTCAAAGAACGGCAAAATCAAATGGTCCTCCGTGGCCTATCGCGGCCCGGACCGGCCCCGCGCCATCCGCCGCCCCGGCTCCGTCGTGACGCCGGGCCCCACGGCCTACGCCGCGTCACGAGCGCTCGACATCGAGTCCGCCTTCCGGCTGTTTGTCACACCGGCGATAGAAAGGATCATTGTGGACATGACAAATCTGCAGGGGGTGAGAAAATACGGCGACGGCTGGCGACCCATGGACTCCACCGACCTGCGCGCCTACGTAGGGCTGCTGATCCTAGCCGGCGTCTACAGGTCCCGAGGCGAGGCCGCGGCCAGCCTGTGGGACGCCGAGAGCGGCAGGACCGTGTTCCGCGCCACCATGCCGCTCAAGGTGTTTCACAAGTACTCGAGGCTGCTGCGATTCGACGACCGCCAGTCGAGACCCGCCAGACTCGCCACCGACAGACTGGCGGCCATAAGAGAGGTATGGGACCTGTGGGAGGAGCGGCTGCCGGCCCTCTACAACCCGGGGCCCGACCTGACGGTGGACGAACAACTGGTCCCGTTCAGAGGACGCTGTCCTTTCCGACAGTACATTCCCAGCAAGCCGGCCAAATACGGCATCAAGTCGTGGGTGGCCTGCGACGCCAAGTCCAGCtacgcttggaagatgcaagtctacacCGGCAAGGCGGCCGGCGGAGGCCCCGAGAAGAACCAGGGCGCCCGCGTCGTCCTCGATCTGACCGAGGGACTGCCGGGCGGTCACAACGTCAcgtgtgacaatttcttcacctccTACGAACTGGGCCAGCGGCTCCTCGAGAGGAACCTCACCATGGTGGGCACGGTGAGAAAGAACAAGGCCGAGCTCCCGCCCGCGCTGCTCCAGTCAAAGGGCAGACAGGTCCTGTCCTCCAGGTTCGCCTTCACGCCCACCGCCACTCTAGTGTCCTACCTGGCAAAGAGAAATAAGAACGTGCTACTTCTGAGCACGCTGCACGCGGAGCCCGACGTTAGCGATCGCCGCGACCGGAAGCCGGCCCTCATCCTAGACTACAACTGCAACAAGGGCGGCGTGGACAACCTAGACAAGGTGGTCGGGACCTACAGCTGCAGACGGATGAccgcccgctggcccctggtcatcttccacaaCATCCTCGACGTGTCCTCCTACAACGCCTTTGTCATATGGCGAGAGATCAAGCCCGACTGGATGCCTGGGaagcggaacaagaggagggtgttcctggagcagctcggAAAGGCACTCGTGAAGCCCTTGATACAAAGAAGGCAGCGGCTCCCCCGCACCCAAGCCGTGTCCGCACTTGTCAAAGTCCTACAGAGTGCCACCGCCGAGGCTCGTCCGCCAGCCCGGGAGCAAGCCGCTGGCCCGGCCGCCGCCGCCCCAGCCGCCCCGCCGGTGGCGAGTAAGAGGAAGAGGTGTCAGCTCTGCCCACCCAAGAAGGACGCCAAGACCTACACCGCGTGCTGCAGGTGTaacaaatacatctgcaaaggctGTTCACACGCATACTGTCAAACTTGTGCCCACTGGGCCTTTAGCCAAGACGGGACAGGGTGA

Function

NR:

description
piggyBac transposable element-derived protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945533.1 True 1971 mRNA 0.63 2 33903944 33906267
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110490014 LOC106590055 coding downstream 555230 33267004 ~ 33348714 (-)
LOC118938795 NA coding downstream 609351 33291229 ~ 33294593 (-)
LOC110490012 LOC106590058 coding downstream 1224097 32557738 ~ 32679847 (-)
sugct LOC106590081 coding downstream 1617724 32120931 ~ 32286220 (-)
LOC110490834 NA coding downstream 1871595 32018399 ~ 32032349 (-)
LOC118938915 NA coding upstream 1004968 34911235 ~ 34912329 (-)
LOC110490023 LOC106590042 coding upstream 2132511 36038778 ~ 36142327 (-)
LOC110490717 LOC106590044 coding upstream 2409171 36315438 ~ 36462331 (-)
LOC110490025 LOC106590045 coding upstream 2597641 36503908 ~ 36545570 (-)
LOC110490027 NA coding upstream 2689051 36595318 ~ 36610151 (-)
G1284034 NA non-coding downstream 11454 33892252 ~ 33892490 (-)
G1284008 NA non-coding downstream 41726 33862015 ~ 33862218 (-)
G1283851 NA non-coding downstream 243774 33656562 ~ 33660170 (-)
G1283732 NA non-coding downstream 255635 33648088 ~ 33648309 (-)
G1283730 NA non-coding downstream 256716 33647016 ~ 33647228 (-)
G1284067 NA non-coding upstream 12551 33918818 ~ 33919028 (-)
G1284096 NA non-coding upstream 16296 33922563 ~ 33922818 (-)
G1284140 NA non-coding upstream 63922 33970189 ~ 33970412 (-)
G1284151 NA non-coding upstream 68318 33974585 ~ 33974838 (-)
G1284205 NA non-coding upstream 100633 34006900 ~ 34007136 (-)
G1283257 NA other downstream 637726 33262580 ~ 33266218 (-)
G1282159 LOC106590060 other downstream 1425428 32475919 ~ 32478516 (-)
G1281363 NA other downstream 2037807 31865289 ~ 31866137 (-)
G1281361 NA other downstream 2039308 31864234 ~ 31864636 (-)
dlgap1b LOC106590111 other downstream 3915428 29979175 ~ 30253803 (-)
G1285645 NA other upstream 1078586 34984853 ~ 34985274 (-)
G1287067 NA other upstream 2252169 36158436 ~ 36158733 (-)
G1288280 NA other upstream 3332907 37239174 ~ 37239410 (-)
G1288297 NA other upstream 3354748 37261015 ~ 37261648 (-)
G1289323 LOC106590025 other upstream 4103926 38010193 ~ 38011916 (-)

Expression

LOC110516899(LOC106595224) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.4.
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LOC110516899(LOC106595224) Expression in each Bioproject

Bar chart with 7 bars.
LOC110516899(LOC106595224) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3.
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Co-expression Network