LOC110490016 (LOC106590054)


Basic Information

Item Value
gene id LOC110490016
gene name LOC106590054
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 34277021 ~ 34325910 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563092.2
atagatggacaaagagaaggagagagggaaagagaaaaaagagagagaggcaggaagagagaggatagaaagaGGGTGGGGGAAGAAGATCAAATGTGAGGCAGGAGGTGGAgcaagagagggaggtagagggagaagagcatagagagagacagaggaagcagGCAGTAGGctcacacaaacactgacacacacactagcGCTTGCAGTACTGTTCAGTCTTGGATGTAAGTGCAGCCAAGAGGAGATAGAATAAGTGCCACCGCTAAGCACTGCTACGCGAGGAGTGGGGAGACAGTACCATGACACTCAGAAACACAGATGGACAATACTACTAGCTGTGAATAACAAAGggatcaataagggatcaaaggGAAGAAGACTACAATGCCTGATTTGGTTACATTTCATTCCAGCGTGCATCCTACCAGAAGTCCATTACCATAACTCATTAGTCATACATAACTATTTCCCCGTGTGATTGGATACCATGATAACCAATCACTTCCTGGGTCTACTGATGCTCTCCATCCTGCAGCCAATCAATGCCCTGCCTGTGGCACCTGGAAATACTGTGAATCTCTTGGGAACATCACAAGAGAAGGATGATGGAAGGATACTCCAGCGCTCCAAACGAGGATGGATGTGGAATCAATTCTTTCTTCTGGAGGAGTACACAGGGAATGACAACCAGTATGTTGGCAAGCTGCACTCGAATATGGACAGAGGCGATGGTAACGTGAAGTACATTCTCACTGGAGAAGGGGTGGGAAGCTTGTTTTTAATAGACGAGAACTCAGGTGACATTCACGCCACTAAGAGgttggacagggaggagagggccATATACACACTCCACGCTAAGGTGGTGGACAAGAGGACAAATGAGACACTGGAGGCTGATACTGAATTTAACATCAAGATCCACGACATCAACGACAATGAGCCAAAGTTCTCTAAAGACCTTTATTTCGCCAGTGTCCCAGAGATGTCTGACGTAGGCACATCAGTCATTCAAGTCACCGCGACAGATGCTGATGATCAAACATACGGGAACAGTGCCAAGCTTGTGTACAGTATTCTACAGGGTCAACCATATTTCTCAGTGGATTCAGACAATGGCACGATTAGAACAGCCCTGCCTAACATGGACAGGGAGACCAAGGAGAACTACCAGGTTGTGATCCAGGCTAAAGATATGGCTGGCCAGATGGGTGGGTTATCAGGGACCACCACAGTCAGCATTACCCTCTCTGATGAGAATGACAGCCCACCGCGATTTGCTAACCATACGTTTcgtctgagcactctggagtcGGCTGAAGTAGGAGCAGCCATAGGTCGGATCAAGGCTAACGATGCGGACGTGGGGCGGAATGCTGAGATGCAGTATAGCATCGTCGACCGAGACGGACAGGATATGTTCACGATCATCTCCGACCAAAACACACAGGAGGGCGTTATCAGGGTAAAAAAGCAACTGGATTATGAGAAACAAAGGACGTACTCATTCAAAGTGGAGGTGACTAACACCTATCTGGACCCCAGGTTCATGTACAGTCCAAACCCTCCTTTCAAAGATGACGCCATGGTGAGAGTGACGATAGAGGATGTGGATGAGCCGCCAGTGTTTAGCAGGAACCCTTATATCATTGAGGTGCACGAGGACACAGCCGCTGGCAGCTTTGTTGGTGTGGTGTCTGCCAGGGACCCCGATGCTGACAACAACTCAGTCAAATACTCCATTGACCGCCATACCGATTtggagagactgttcaacattgATTCTGTTAACGGCACCATTACAACACTGAAAGGCCTCGACAGGGAGATGTCAAAATGGCATAACATCTCTGTTGTTGCAACTGAAATAAGTAACCCTCGCCAAACCACTCGAGTCCCAGTGTTCATCAAGGTCCTGGACGTTAACGACAATGCACCTGAATTTGCCATGTATTACGAGACATTTGTCTGTGAAAATGTCCAATCAGGACAGCTGATTCAGACGATAAGTGCGGTTGACACAGATGAGCCCCTTGTTGGACATAAGTTTGTCTTCAGCATAAGCTCCTCCAATCCAAACTTCACTATCGTTGACAATGAAGATAACACAGCCAGGATCCTGACTCGGAGGGCAGGATTCAGCCGCCGTGAGATGAATACCTACCTACTGCCCGTGGTGATCTCGGACAATGACTACCCTATCCAGAGCAGCACCAGCACTTtgactgtgaatgtgtgtgcctGCGACAGCCGGGGGAACATGCAGTCCTGCAACACTGAGGCTCTGCTGTCTGCGGGGCTGAGCACTGGAGCCCTGGTGGCTATCCTGCTCTGTGTCATTATCCTCTTGATGATCGTGGTGCTGTTCGCTGCCCTGAGGAGGCAGCAGAGGAAGAAGGAGCCTCTGATCATCTCCAAAGAGGATGTGAGAGACAACGTCGTCAGCTACAACGATgaagggggtggagaggaggacacCCAGGCCTTTGATATTGGCACGCTGCGCAACCCAGAGGTGATGGACGCTAACAAGCTGCGCAGGGATATCATCCCAGAGATGCTATTTCCCTTCCAGAGGACATCTCCTATAAAGGATAACGCCGACGTCAGAGAATTCATTCATGGGAGGCTTTATGAGAACGACTCGGACCCCACCGCGCCGCCCTACGACTCCCTGGCCACCTACGCCTATGAGGGGAGCGGCTCGCTAGCCGAGTCCCTCAGCTCCCTGGAGTCAGGATGTGTAGAGGGGGACCAGGAGTACGATTACCTCAGCAACTGGGGACCCCCGTTCAAAAAACTAGCAGATATGTATATAGGGAAGGACACGGCGAGAGAAACCTAGATCATAATTAGGCCTATACGAAAGCAGCTCATCATCAACGTCATGTCTCAataatctctctcacacactttcctGCCACCCATCCATTGATTCATATGAATGGTCAAGTAGATTTCAAGACTTGAACATTACTCTCAACACTGGTGGTGACATTTCTCACAGTTTTACTGTTTTTGGTATAATCAGTAAAGATGCCTTTGAATTTTAGGAAATTTTGTGAACAATGGTGTGGACAATGTGTTTTGTAACTGAGGAACGAGATAGTAGTCTTGTATACTATCAATGTTTAATGGGAAAACATATTCAtgaaaaaaagtaaaaaatattaaaaaatgcTTTTCCAGCAAATTACATTTGAAATAGATACATGTATGAACTGTTTTTCCATGATGGACATACTATATCCTATTCACTATCTTTGTTTGACAAACAATGTTCATGTGAACGGTTGGTAAGGTTTATTCGTCAAACTGTGGATACATTTCATCATAGGTGTACAATGTAATAAGGACGTGTACGTTGTAGGGTAACTGTTACACACTGAATTCATGTTGTTTGATTGCCAAGTCatattgttttatatttatatttttatactTATTTTATTAATAAAAATTCCCCAAAAACA
>XM_036944303.1
CAGTTCCAGTGAGAGTGTCAGCCCACTTTCTCCTGCTCCTTCTCTCCCAGAAAACTAAGACCCAGCGGCACTCATGAGAGCGACCCCACTTCTGTGAACACTGCTGCACTCGAATATGGACAGAGGCGATGGTAACGTGAAGTACATTCTCACTGGAGAAGGGGTGGGAAGCTTGTTTTTAATAGACGAGAACTCAGGTGACATTCACGCCACTAAGAGgttggacagggaggagagggccATATACACACTCCACGCTAAGGTGGTGGACAAGAGGACAAATGAGACACTGGAGGCTGATACTGAATTTAACATCAAGATCCACGACATCAACGACAATGAGCCAAAGTTCTCTAAAGACCTTTATTTCGCCAGTGTCCCAGAGATGTCTGACGTAGGCACATCAGTCATTCAAGTCACCGCGACAGATGCTGATGATCAAACATACGGGAACAGTGCCAAGCTTGTGTACAGTATTCTACAGGGTCAACCATATTTCTCAGTGGATTCAGACAATGGCACGATTAGAACAGCCCTGCCTAACATGGACAGGGAGACCAAGGAGAACTACCAGGTTGTGATCCAGGCTAAAGATATGGCTGGCCAGATGGGTGGGTTATCAGGGACCACCACAGTCAGCATTACCCTCTCTGATGAGAATGACAGCCCACCGCGATTTGCTAACCATACGTTTcgtctgagcactctggagtcGGCTGAAGTAGGAGCAGCCATAGGTCGGATCAAGGCTAACGATGCGGACGTGGGGCGGAATGCTGAGATGCAGTATAGCATCGTCGACCGAGACGGACAGGATATGTTCACGATCATCTCCGACCAAAACACACAGGAGGGCGTTATCAGGGTAAAAAAGCAACTGGATTATGAGAAACAAAGGACGTACTCATTCAAAGTGGAGGTGACTAACACCTATCTGGACCCCAGGTTCATGTACAGTCCAAACCCTCCTTTCAAAGATGACGCCATGGTGAGAGTGACGATAGAGGATGTGGATGAGCCGCCAGTGTTTAGCAGGAACCCTTATATCATTGAGGTGCACGAGGACACAGCCGCTGGCAGCTTTGTTGGTGTGGTGTCTGCCAGGGACCCCGATGCTGACAACAACTCAGTCAAATACTCCATTGACCGCCATACCGATTtggagagactgttcaacattgATTCTGTTAACGGCACCATTACAACACTGAAAGGCCTCGACAGGGAGATGTCAAAATGGCATAACATCTCTGTTGTTGCAACTGAAATAAGTAACCCTCGCCAAACCACTCGAGTCCCAGTGTTCATCAAGGTCCTGGACGTTAACGACAATGCACCTGAATTTGCCATGTATTACGAGACATTTGTCTGTGAAAATGTCCAATCAGGACAGCTGATTCAGACGATAAGTGCGGTTGACACAGATGAGCCCCTTGTTGGACATAAGTTTGTCTTCAGCATAAGCTCCTCCAATCCAAACTTCACTATCGTTGACAATGAAGATAACACAGCCAGGATCCTGACTCGGAGGGCAGGATTCAGCCGCCGTGAGATGAATACCTACCTACTGCCCGTGGTGATCTCGGACAATGACTACCCTATCCAGAGCAGCACCAGCACTTtgactgtgaatgtgtgtgcctGCGACAGCCGGGGGAACATGCAGTCCTGCAACACTGAGGCTCTGCTGTCTGCGGGGCTGAGCACTGGAGCCCTGGTGGCTATCCTGCTCTGTGTCATTATCCTCTTGATGATCGTGGTGCTGTTCGCTGCCCTGAGGAGGCAGCAGAGGAAGAAGGAGCCTCTGATCATCTCCAAAGAGGATGTGAGAGACAACGTCGTCAGCTACAACGATgaagggggtggagaggaggacacCCAGGCCTTTGATATTGGCACGCTGCGCAACCCAGAGGTGATGGACGCTAACAAGCTGCGCAGGGATATCATCCCAGAGATGCTATTTCCCTTCCAGAGGACATCTCCTATAAAGGATAACGCCGACGTCAGAGAATTCATTCATGGGAGGCTTTATGAGAACGACTCGGACCCCACCGCGCCGCCCTACGACTCCCTGGCCACCTACGCCTATGAGGGGAGCGGCTCGCTAGCCGAGTCCCTCAGCTCCCTGGAGTCAGGATGTGTAGAGGGGGACCAGGAGTACGATTACCTCAGCAACTGGGGACCCCCGTTCAAAAAACTAGCAGATATGTATATAGGGAAGGACACGGCGAGAGAAACCTAGATCATAATTAGGCCTATACGAAAGCAGCTCATCATCAACGTCATGTCTCAataatctctctcacacactttcctGCCACCCATCCATTGATTCATATGAATGGTCAAGTAGATTTCAAGACTTGAACATTACTCTCAACACTGGTGGTGACATTTCTCACAGTTTTACTGTTTTTGGTATAATCAGTAAAGATGCCTTTGAATTTTAGGAAATTTTGTGAACAATGGTGTGGACAATGTGTTTTGTAACTGAGGAACGAGATAGTAGTCTTGTATACTATCAATGTTTAATGGGAAAACATATTCAtgaaaaaaagtaaaaaatattaaaaaatgcTTTTCCAGCAAATTACATTTGAAATAGATACATGTATGAACTGTTTTTCCATGATGGACATACTATATCCTATTCACTATCTTTGTTTGACAAACAATGTTCATGTGAACGGTTGGTAAGGTTTATTCGTCAAACTGTGGATACATTTCATCATAGGTGTACAATGTAATAAGGACGTGTACGTTGTAGGGTAACTGTTACACACTGAATTCATGTTGTTTGATTGCCAAGTCatattgttttatatttatatttttatactTATTTTATTAATAAAAATTCCCCAAAAACA

Function

NR:

description
cadherin-10-like

GO: NA

KEGG:

id description
K06801 CDH9; cadherin 9, type 2, T1-cadherin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563092.2 False 3476 mRNA 0.47 12 34277021 34325910
XM_036944303.1 True 2873 mRNA 0.47 11 34290838 34325910

Neighbor

gene id symbol gene type direction distance location
LOC110490956 drosha coding upstream 1014977 33099881 ~ 33262044 (+)
LOC110490013 LOC106590056 coding upstream 1260064 33014206 ~ 33016968 (+)
LOC118938962 NA coding upstream 1344171 32932796 ~ 32932850 (+)
LOC110490011 LOC106590060 coding upstream 1797032 32350805 ~ 32480547 (+)
LOC118938888 NA coding upstream 2265276 32008121 ~ 32011745 (+)
LOC110490017 LOC106590053 coding downstream 298004 34623914 ~ 34822015 (+)
LOC110490018 LOC106578564 coding downstream 666513 34992423 ~ 35361339 (+)
LOC118938916 NA coding downstream 1290914 35616824 ~ 35619520 (+)
LOC110490019 LOC106578561 coding downstream 1410472 35736382 ~ 35815615 (+)
LOC110490020 LOC106590040 coding downstream 1521976 35847886 ~ 35895107 (+)
G1284530 NA non-coding upstream 48439 34228288 ~ 34228582 (+)
G1284527 NA non-coding upstream 49855 34226762 ~ 34227166 (+)
G1284430 NA non-coding upstream 112097 34164604 ~ 34164924 (+)
G1284341 NA non-coding upstream 173234 34103324 ~ 34103787 (+)
G1284322 NA non-coding upstream 186028 34090776 ~ 34090993 (+)
G1284800 NA non-coding downstream 90817 34416727 ~ 34416964 (+)
G1284957 NA non-coding downstream 200761 34526671 ~ 34527044 (+)
G1284966 NA non-coding downstream 207575 34533485 ~ 34533740 (+)
G1284968 NA non-coding downstream 208074 34533984 ~ 34534317 (+)
G1284970 NA non-coding downstream 210186 34536096 ~ 34536327 (+)
G1284354 NA other upstream 164750 34111807 ~ 34112271 (+)
G1282302 NA other upstream 1578985 32687558 ~ 32698036 (+)
G1281462 NA other upstream 2280508 31996167 ~ 31996513 (+)
G1279833 NA other upstream 3329691 30944171 ~ 30947330 (+)
htr5ab htr5a other upstream 3869004 30395817 ~ 30416375 (+)
G1286648 LOC106590042 other downstream 1709673 36035583 ~ 36093396 (+)
G1287489 LOC106590045 other downstream 2183168 36509078 ~ 36510512 (+)
G1289491 NA other downstream 3857526 38183436 ~ 38184003 (+)
G1289710 NA other downstream 4268970 38594880 ~ 38600241 (+)
G1290549 LOC106590036 other downstream 4711095 39037005 ~ 39061248 (+)

Expression


Co-expression Network