LOC110490033 (LOC106590025)


Basic Information

Item Value
gene id LOC110490033
gene name LOC106590025
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 37974722 ~ 38017988 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563126.2
GGTTTTTCCTGTGAAATTGGGGCTTCGTTCAGAGGAGGGCACTGCGGACTTGTCTCTTCCTCTAATTTTGCGAAGAAAAAGAGGTTCGCGGCTACTGGAAAATACTAAATATATCTAATAAGTACACTTTTATACAACCAAATAGTAGATAATATTTTTCCCTTTCGCAATGGAGTAACTGTTTAAGGAATGACCCGTGGGGGAGTAAATCGACCGTGACTTTTTGCAGGAGGAGAAAGTAGCTCCCTTTGCCAACAAGGCAATTGTTGCTGTGTCTACGCTGGGTAGCGGATCACTACGGATATTTGAAAAAGGATAGATACATTTACGTATGTTGCCTCGGCAATAAATCACGAGGAGAAGATGGACCTGAAACTACCTCTGATATCAACATTGTTAGCAGTCATTTGTTACAGCAGTGCTCAGCAAGAAGGGAACGAGTGCATCAAGGCCAATGCCAAGTCCTGTGGGGAGTGTATTCAAGTGGGAGCGAAATGTGGATGGTGCACAGACCCAgaGTTTCTTAAGCAGGGTGAGGCCACGTCGACCCGCTGTGACGAGCTAGAGTCCCTGCGGAAGAGAGGTTGCAGTGGCGCCAAGGTAGAGAACCCCCGAGGCAGCCAACAGGCCCTGCAGAACAAGACTGTGACCAACCGCAACAAGGGAGCAAAGAAACTCAGACCAGAGGATATCACACAGATCCAGCCCCAGAAACTCACCCTTAGCCTCAGATCTGGTGAACCCCAGTCTTTTAATCTGAAGTTCAAACGAGCTGAGGATTACCCCATCGACCTCTACTACCTGATGGACCTCTCCTACTCAATGAAGGATGATCTGGAAAATGTAAAGAACCTGGGAACACAGTTGATGCTGGAGATGTCAAAGATCACATCTGATTTCAGAATCGGTTTTGGTTCCTTCGTTGAGAAGACTGTAATGCCTTACATAAGCACCACCCCAGCCAAGCTGCTGAACCCCTGTACTGGGGACCAGAACTGCACCAGTCCATTCAGCTATAAAAACGTCCTGAAGCTGACCAGCAATGGACAGGAGTTCAACACCCTGGTGGGACGACAGCAGATCTCTGGAAACCTGGACTCACCAGAGGGAGGCTTTGATGCCATCATGCAAGTGGCTGTCTGTGGAgaGCACATTGGCTGGAGGAACGTCACACGTCTGCTGGTGTTTTCCACTGATGCTGGCTTCCACTTTGCTGGAGATGGGAAACTGGGAGGGATTGTTCTGCCCAACGATGGGAAATGCCACCTGGAGAACAATATGTACACCATGAGCCACTACTATGACTACCCCTCCATCGCCCATCTGGTTCAGAAACTAAGTGACAACAACATCCAGACAATCTTTGCCATCACAGAGGAGTTCCAGCCTGTTTACAAGgAGTTGAAGAATCTCATTCCTAAGTCTGCAGTTGGGACACTCTCTGCAAACTCCAGCAACGTTATCAACCTCATTATTGATGCCTACAATTCTCTTTCCTCAGAGGTGATTCTGGAGAACAGTAAGCTAGCAGAGGGAGTGACCATCGCGTACCAGTCACGCTGCAAGAACGGAGTGACtggtgagggagagatgggaagaaaaTGCTCCAACATCTCCATCGGAGACGAGGTGTCTTTCACCATAAGCATCACAGCTAAGCAGTGTCCTAAGATGGGCAAACCAGAGACGATCAAGATCAAACCCCTAGGGTTCACAGAGGAGGTGGAGATCGCTCTGAACTTCATCTGTGAATGTGACTGTCACAAAAAAGGCACTGAGAACAGTGAAATCTGCCACAAAGGCAACGGGACTTATGAATGTGGAGCCTGCAGGTGCAACGAGGGCCGTATAGGTAGACATTGTGAGTGCAGCACCAACGAAGTGACCAGCGAAGACCTGGATAAGAACTGTCGTAAAGACAATGGTACAGACATCTGCAGCAACAATGGAGACTGCGTGTGTGGAACCTGCGAGTGTAAGAAGAGGGAGAACCCAGAGGAACGCTACAGTGGAAAGTTCTGCGATTGTGACAACTTTAACTGTGACCGCTCCAACAACAAACTCTGTGGAGGACACGGTCGTTGTGAGTGCAGGGTGTGTATCTGTGATGCCAACTGGACGGGCAGTGCCTGTGACTGTTCTCTGGACACCACAACCTGCCTGGCCTCTAACAAGCAGATCTGTAATGGCCGGGGCACCTGTGAGTGTGGAACCTGTAAGTGCACTGACCCCAAGTTCCAGGGGCCTACCTGTGAGATCTGCCCCACCTGTCCAGGAGTCTGCGCAGAACACAAGGAGTGTGTTCAGTGCAGGGCCTTTGGGACGGGGGAGAAGAAGGAGACGTGTGAGAGGGACTGTAGCTACTTCAACCTGATCAAGGTGAAGGACCGAGACAAGCTGCCCCAGCCAGGACAGGCCTTCCCCCTGATGCACTGTAAGGAGAGGGATGCCAACGACTGCTGGTTCTACTACACCTAcgctgtcaacaacaacacagagaaggAGGTCCATGTGGTGGAAACACTAGACTGCCCTGCGGGCCCGGACATCATCCCCATCGTGGCTGGCGTTGTGGCGGGCATTGTGCTGATCGGCCTGGCTTTGCTGCTCATTTGGAAGCTGCTCATGATCATCCACGACAGGAGGGAGTTCGCCAAGTTTGAAAAGGAGAAGATGAATGCTAAATGGGACACGCAAGACAATCCTATATACAAGAGCCCTATTAATAAGTTCCAGAATCCAATCTATGGACGTAAAGCTGCAGTTCTATAAGGAGAAAATCCCATCTACAAGAGTGCTGTTACGACGGTGGTCAACCCCAAATATGAAGGCAAATGATGGAGTTTCAGGTCTCCCAGAACAACACTGTATGCAAATCTAGTTCTAGGGCATGAGAGGTATACGGTCTTGGTAATTTCTTCTTCTTGTCGCTTCAGTATTATAACGTTTGGCCACTACATTTGGTCTTCTTACTAACAGTTTATTTTCTATGCAATCATTGTCTTTTAAAATGTACAGTTAGTTGTTAAGTGTATATACTTTaaggtgcttttttttttttttttcttgaagaatTGGTTAGAAATAAGGTTTTTGCCACAGGACTGGTATGGGCCACGGGTTGTGCCTTTCAGAGACCATACCCATATGGGCACAGAGAGTACTCTCTTTCTGTTCATGGACTTGTTATTAGTGTGCCATTGAGTGTCAAACAGCACCTGAGACTAAAGCATACCAATATTTTGCATTGTGGCTGTGAAGTATTTTTTTCAACCATAGGGTACATATGTAGTAAACATTGATTTTGCCTTGCGATAGACTAGCATCCTGTTCAGGGTGTGTACTTGTATATCAacctgcctcacactacagaaacaggagatgggctcctgtcatatgggccgttctggctcaGACAGGGCTATATCCTTATTAATTTGTGGATAAAAGAGACATCCATCAAGCATGATTGCAAGAATCTGGATTCATCATTAGGGGTAGTTTTTAAAGATCACATAAATTCTAACATAGTCATCAGGTAacatgtgcatcccaaatggcacccaattccgtTTATAGCGTGCTACTTTTGACCAACACCCTATAggccccctggtcaaaagtagtgcactacatggggaacaAGGTGCTATATTTGGGACGCATTACATGTAATGTGTGAAGATGTGCTAAGAACTAATACATGGAAAGCATTGATGTTTAGATGTCAAAGGTTATTGCACTATTGATGAGAACAGGTTTTGCCTTGCAAAATGActgaaaaaaaaacaatgatTTCATAGAACTGTCATAAACAGGCTATTTTAAAGGGATTGAAAACCACTTGTATTAATGGGATAAAGAAATGTATAAATCACTTAATTACATAATCAATTGACATGCATTTGTGACAAAATTAGAAGTGTCATTTATTTTTTGTATAATTTAGTTTTATTCTAAAAGATTTCAGTATTCAACCTCAGGTCCTTTTCTGTACTCATTACTAGCAAAGCCAAATATCTGCCTTCTTTGCAAAGCCTTATTCCATGTGTTTCATGTTGATCAATGTTAAACAAATTGTAAACTTTGTTCTGAAGACATACTGATTGATACAAGTTAGCTTGTTTTAATCTGTTGTTTCCCCCTTTTGAAATCATTGGGCTGGGGTAACCCCTCATTTGCAGTGCTTGTGTAAAATCAGTATTAAGTGAAAGGCCTCTTGGAATTGTTTTAAAATACAACAACTCCTCAATACCATATCTTGTTTTTAAAGTGCCTTTTATTTCAATATTATTTTCACTTTTCCCAATGCTGTTTCTGAATGTATTTATTAAAAAGTACCTAAATGACA
>XM_021563128.2
GGTTTTTCCTGTGAAATTGGGGCTTCGTTCAGAGGAGGGCACTGCGGACTTGTCTCTTCCTCTAATTTTGCGAAGAAAAAGAGGTTCGCGGCTACTGGAAAATACTAAATATATCTAATAAGTACACTTTTATACAACCAAATAGTAGATAATATTTTTCCCTTTCGCAATGGAGTAACTGTTTAAGGAATGACCCGTGGGGGAGTAAATCGACCGTGACTTTTTGCAGGAGGAGAAAGTAGCTCCCTTTGCCAACAAGGCAATTGTTGCTGTGTCTACGCTGGGTAGCGGATCACTACGGATATTTGAAAAAGGATAGATACATTTACGTATGTTGCCTCGGCAATAAATCACGAGGAGAAGATGGACCTGAAACTACCTCTGATATCAACATTGTTAGCAGTCATTTGTTACAGCAGTGCTCAGCAAGAAGGGAACGAGTGCATCAAGGCCAATGCCAAGTCCTGTGGGGAGTGTATTCAAGTGGGAGCGAAATGTGGATGGTGCACAGACCCAgaGTTTCTTAAGCAGGGTGAGGCCACGTCGACCCGCTGTGACGAGCTAGAGTCCCTGCGGAAGAGAGGTTGCAGTGGCGCCAAGGTAGAGAACCCCCGAGGCAGCCAACAGGCCCTGCAGAACAAGACTGTGACCAACCGCAACAAGGGAGCAAAGAAACTCAGACCAGAGGATATCACACAGATCCAGCCCCAGAAACTCACCCTTAGCCTCAGATCTGGTGAACCCCAGTCTTTTAATCTGAAGTTCAAACGAGCTGAGGATTACCCCATCGACCTCTACTACCTGATGGACCTCTCCTACTCAATGAAGGATGATCTGGAAAATGTAAAGAACCTGGGAACACAGTTGATGCTGGAGATGTCAAAGATCACATCTGATTTCAGAATCGGTTTTGGTTCCTTCGTTGAGAAGACTGTAATGCCTTACATAAGCACCACCCCAGCCAAGCTGCTGAACCCCTGTACTGGGGACCAGAACTGCACCAGTCCATTCAGCTATAAAAACGTCCTGAAGCTGACCAGCAATGGACAGGAGTTCAACACCCTGGTGGGACGACAGCAGATCTCTGGAAACCTGGACTCACCAGAGGGAGGCTTTGATGCCATCATGCAAGTGGCTGTCTGTGGAgaGCACATTGGCTGGAGGAACGTCACACGTCTGCTGGTGTTTTCCACTGATGCTGGCTTCCACTTTGCTGGAGATGGGAAACTGGGAGGGATTGTTCTGCCCAACGATGGGAAATGCCACCTGGAGAACAATATGTACACCATGAGCCACTACTATGACTACCCCTCCATCGCCCATCTGGTTCAGAAACTAAGTGACAACAACATCCAGACAATCTTTGCCATCACAGAGGAGTTCCAGCCTGTTTACAAGgAGTTGAAGAATCTCATTCCTAAGTCTGCAGTTGGGACACTCTCTGCAAACTCCAGCAACGTTATCAACCTCATTATTGATGCCTACAATTCTCTTTCCTCAGAGGTGATTCTGGAGAACAGTAAGCTAGCAGAGGGAGTGACCATCGCGTACCAGTCACGCTGCAAGAACGGAGTGACtggtgagggagagatgggaagaaaaTGCTCCAACATCTCCATCGGAGACGAGGTGTCTTTCACCATAAGCATCACAGCTAAGCAGTGTCCTAAGATGGGCAAACCAGAGACGATCAAGATCAAACCCCTAGGGTTCACAGAGGAGGTGGAGATCGCTCTGAACTTCATCTGTGAATGTGACTGTCACAAAAAAGGCACTGAGAACAGTGAAATCTGCCACAAAGGCAACGGGACTTATGAATGTGGAGCCTGCAGGTGCAACGAGGGCCGTATAGGTAGACATTGTGAGTGCAGCACCAACGAAGTGACCAGCGAAGACCTGGATAAGAACTGTCGTAAAGACAATGGTACAGACATCTGCAGCAACAATGGAGACTGCGTGTGTGGAACCTGCGAGTGTAAGAAGAGGGAGAACCCAGAGGAACGCTACAGTGGAAAGTTCTGCGATTGTGACAACTTTAACTGTGACCGCTCCAACAACAAACTCTGTGGAGGACACGGTCGTTGTGAGTGCAGGGTGTGTATCTGTGATGCCAACTGGACGGGCAGTGCCTGTGACTGTTCTCTGGACACCACAACCTGCCTGGCCTCTAACAAGCAGATCTGTAATGGCCGGGGCACCTGTGAGTGTGGAACCTGTAAGTGCACTGACCCCAAGTTCCAGGGGCCTACCTGTGAGATCTGCCCCACCTGTCCAGGAGTCTGCGCAGAACACAAGGAGTGTGTTCAGTGCAGGGCCTTTGGGACGGGGGAGAAGAAGGAGACGTGTGAGAGGGACTGTAGCTACTTCAACCTGATCAAGGTGAAGGACCGAGACAAGCTGCCCCAGCCAGGACAGGCCTTCCCCCTGATGCACTGTAAGGAGAGGGATGCCAACGACTGCTGGTTCTACTACACCTAcgctgtcaacaacaacacagagaaggAGGTCCATGTGGTGGAAACACTAGACTGCCCTGCGGGCCCGGACATCATCCCCATCGTGGCTGGCGTTGTGGCGGGCATTGTGCTGATCGGCCTGGCTTTGCTGCTCATTTGGAAGCTGCTCATGATCATCCACGACAGGAGGGAGTTCGCCAAGTTTGAAAAGGAGAAGATGAATGCTAAATGGGACACGGGAGAAAATCCCATCTACAAGAGTGCTGTTACGACGGTGGTCAACCCCAAATATGAAGGCAAATGATGGAGTTTCAGGTCTCCCAGAACAACACTGTATGCAAATCTAGTTCTAGGGCATGAGAGGTATACGGTCTTGGTAATTTCTTCTTCTTGTCGCTTCAGTATTATAACGTTTGGCCACTACATTTGGTCTTCTTACTAACAGTTTATTTTCTATGCAATCATTGTCTTTTAAAATGTACAGTTAGTTGTTAAGTGTATATACTTTaaggtgcttttttttttttttttcttgaagaatTGGTTAGAAATAAGGTTTTTGCCACAGGACTGGTATGGGCCACGGGTTGTGCCTTTCAGAGACCATACCCATATGGGCACAGAGAGTACTCTCTTTCTGTTCATGGACTTGTTATTAGTGTGCCATTGAGTGTCAAACAGCACCTGAGACTAAAGCATACCAATATTTTGCATTGTGGCTGTGAAGTATTTTTTTCAACCATAGGGTACATATGTAGTAAACATTGATTTTGCCTTGCGATAGACTAGCATCCTGTTCAGGGTGTGTACTTGTATATCAacctgcctcacactacagaaacaggagatgggctcctgtcatatgggccgttctggctcaGACAGGGCTATATCCTTATTAATTTGTGGATAAAAGAGACATCCATCAAGCATGATTGCAAGAATCTGGATTCATCATTAGGGGTAGTTTTTAAAGATCACATAAATTCTAACATAGTCATCAGGTAacatgtgcatcccaaatggcacccaattccgtTTATAGCGTGCTACTTTTGACCAACACCCTATAggccccctggtcaaaagtagtgcactacatggggaacaAGGTGCTATATTTGGGACGCATTACATGTAATGTGTGAAGATGTGCTAAGAACTAATACATGGAAAGCATTGATGTTTAGATGTCAAAGGTTATTGCACTATTGATGAGAACAGGTTTTGCCTTGCAAAATGActgaaaaaaaaacaatgatTTCATAGAACTGTCATAAACAGGCTATTTTAAAGGGATTGAAAACCACTTGTATTAATGGGATAAAGAAATGTATAAATCACTTAATTACATAATCAATTGACATGCATTTGTGACAAAATTAGAAGTGTCATTTATTTTTTGTATAATTTAGTTTTATTCTAAAAGATTTCAGTATTCAACCTCAGGTCCTTTTCTGTACTCATTACTAGCAAAGCCAAATATCTGCCTTCTTTGCAAAGCCTTATTCCATGTGTTTCATGTTGATCAATGTTAAACAAATTGTAAACTTTGTTCTGAAGACATACTGATTGATACAAGTTAGCTTGTTTTAATCTGTTGTTTCCCCCTTTTGAAATCATTGGGCTGGGGTAACCCCTCATTTGCAGTGCTTGTGTAAAATCAGTATTAAGTGAAAGGCCTCTTGGAATTGTTTTAAAATACAACAACTCCTCAATACCATATCTTGTTTTTAAAGTGCCTTTTATTTCAATATTATTTTCACTTTTCCCAATGCTGTTTCTGAATGTATTTATTAAAAAGTACCTAAATGACA

Function

NR:

description
integrin beta-1-like isoform X2

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0008305 integrin complex cellular_component
GO:0046982 protein heterodimerization activity molecular_function
GO:0001968 fibronectin binding molecular_function

KEGG:

id description
K05719 ITGB1, CD29; integrin beta 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563126.2 False 4351 mRNA 0.45 17 37974722 38017988
XM_021563128.2 True 4273 mRNA 0.45 16 37974722 38017988

Neighbor

gene id symbol gene type direction distance location
nrp1a LOC106590027 coding upstream 14129 37847266 ~ 37960593 (+)
LOC110490032 cul2 coding upstream 1072658 36869213 ~ 36902064 (+)
LOC110490839 LOC106588460 coding upstream 1168767 36805006 ~ 36805955 (+)
LOC110490026 m3k8 coding upstream 1338990 36616159 ~ 36635732 (+)
LOC110490024 LOC106590043 coding upstream 1710640 36166507 ~ 36264082 (+)
LOC110490034 rab18 coding downstream 223 38018211 ~ 38038025 (+)
LOC110490038 LOC106590019 coding downstream 476301 38494289 ~ 38568479 (+)
LOC110490039 LOC106590018 coding downstream 558647 38576635 ~ 38580756 (+)
LOC110490723 LOC106612786 coding downstream 837262 38855250 ~ 38856108 (+)
LOC110490726 LOC106600248 coding downstream 1064826 39082814 ~ 39084700 (+)
G1289050 NA non-coding upstream 128760 37845762 ~ 37845962 (+)
G1289045 NA non-coding upstream 135596 37838914 ~ 37839126 (+)
G1289040 NA non-coding upstream 142678 37831741 ~ 37832044 (+)
G1289031 NA non-coding upstream 155531 37818982 ~ 37819191 (+)
G1289018 NA non-coding upstream 165376 37809130 ~ 37809346 (+)
G1289148 NA non-coding downstream 5452 38023440 ~ 38049365 (+)
G1289408 NA non-coding downstream 98979 38116967 ~ 38117233 (+)
G1289432 NA non-coding downstream 113292 38131280 ~ 38131862 (+)
G1289439 NA non-coding downstream 117639 38135627 ~ 38136087 (+)
G1289474 NA non-coding downstream 146599 38164587 ~ 38164806 (+)
G1287489 LOC106590045 other upstream 1464210 36509078 ~ 36510512 (+)
G1286648 LOC106590042 other upstream 1881326 36035583 ~ 36093396 (+)
G1284354 NA other upstream 3862451 34111807 ~ 34112271 (+)
G1282302 NA other upstream 5276686 32687558 ~ 32698036 (+)
G1281462 NA other upstream 5978209 31996167 ~ 31996513 (+)
G1289491 NA other downstream 165448 38183436 ~ 38184003 (+)
G1289710 NA other downstream 576892 38594880 ~ 38600241 (+)
G1290549 LOC106590036 other downstream 1019017 39037005 ~ 39061248 (+)
G1290614 NA other downstream 1108284 39126272 ~ 39127009 (+)
G1291464 NA other downstream 2049570 40067558 ~ 40067907 (+)

Expression


Co-expression Network