LOC110490039 (LOC106590018)


Basic Information

Item Value
gene id LOC110490039
gene name LOC106590018
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 38576635 ~ 38580756 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944343.1
TCAACTCAAGAGCCTCTCCCCGAAGTCGACCAGTGAAGTGTTGATGCGAGAGTGAGCAACCATTTATTCACATTTCGTTGGTTTCGGATTATAAATGTTATGCACAACCATCATCGCGGGTGTCTGTGAAGTCGGAGTGGACAAGTAGTTACGAGATTTATCACTTTTTCTACTCatggaatgtattttttttcttattttcagCAGCTATAAACATTTCGTTTTTTTCCTGCAGAGCAATCCAAGTAAGGTAAAAGTCGGATTTTAGGGCTATTTCTCTTGTAACCTAGTTTTCTCGATGCAGGGACAAGCCattcgtttttttgttgttattttctTACGTCTTCCAACCGATTGTGATTGTGGCAACATTTGTTCGCGGTCCACCGCTATCTTCTGCAGCGTTCATGTAACCTTGTCTTCGAGCTCAGCCCTACGGGTTTTGCTACTGGGATAAGGGGACTAAAACGTTACTTGTCATAAATGGATCGCCATTCCAGTTTCATTTGCATTTGGCTACAACTGGAACTGTGTGCCATGGCTGTTCTTCTTACTAAAGGAGAAATACGGTGTTACTGTGATGCCCCCCACTGCGTGGCCACAGGCTACATGTGCAAATCGGAACTAAATGCCTGTTTCACCAAGGTGTTGGACCCTATGAACACGAACTCGCCTCTCACACACGGGTGTCTAGATCCCATAGCAAACGCTGCCGACGTGTGCAGTGCTAAGAACACAGATGCCCTGAGCAGGGGCTTGTCCACACTAGAATGTTGTCACGACGACATGTGTAACTACAGAGGACTACACGACCTGGCGCACACCAGAGAATCTACAgACCACGGCAGGTACCAGCCTGAGAGCAACAACCATAACCTGGTCACGCGGGTACAGGAGCTGGCCTCTGCCAAAGAGGTGTGGTTCAGGGCGGCGGTGATTGCGGTGCCTATCGCGGGAGGCCTCATCCTGGTTCTTCTCATCATGCTGGCTTTAAGGATGCTCCGCAGCGAGAACAAGCGGCTGCAGGACCAGAGGCAGCAGATGTTGTCACGGCTCCACTACAGCTTCCATGGCCACCACACTAAGAAGGGCCACGTGGCAAAGCTAGACTTGGAGTGTATGGTGCCTGTGACGGGCCACGAGAACTGCTGCCTCACCTGTGACAAGATGAGACAGGCAGACCTGGGAAATGACAAGATACTGTCACTGGTACACTGGGGGATGTACAGTGGGCACGGGAAGCTGGAGTTCGTATAACTTACTTTTCTAAGATCGTTTGACTTCACTTTATGTCCCACCACACCCTTCCCCACCCGCCCCCCAAAAAACAGCCAAGACTGCCTCCTCCACTCGTTGGGGTTTCTCTTTTAATTAAAAAATTAATCCCCTTTTTTGTCCATTGTACTTATCATTCCATTATTCAATGGAAGAAAAAAAGAGGACAGAATTGAACGCAAGCCTTGTGGTTTTTGCTAAAGGAGCACTTTACTTGAAAATTAAAGGCAAACCAATGAGGAGCTGAGCGGGCAGGGCTGAGCTGACGGATTGAAAGAGCTCTGTCAAGACCCTGTCTGCCTGTGCATCCTGGACTTTACACAGACTGCTGAAGGATTCCAAATCGGTCTTATTTGCACaattgtaaaaacaaaaaaacgttGTTTTGCTTAAAGAAAAGCTAAATAGGAGAAGAATTTTACACTGACACCAGGGtacaaaaaaaaactttttgaGGAGTATAGGTGACTTAAGGTGTGTACACTCCTCTGTACGTTTCTTGATCCAAGCTTATTGTAAagattgaaaatatatatatttttgtctgaAAGAAA
>XM_036944344.1
TCAACTCAAGAGCCTCTCCCCGAAGTCGACCAGTGAAGTGTTGATGCGAGAGTGAGCAACCATTTATTCACATTTCGTTGGTTTCGGATTATAAATGTTATGCACAACCATCATCGCGGGTGTCTGTGAAGTCGGAGTGGACAAGTAGTTACGAGATTTATCACTTTTTCTACTCatggaatgtattttttttcttattttcagCAGCTATAAACATTTCGTTTTTTTCCTGCAGAGCAATCCAAGAGAAATACGGTGTTACTGTGATGCCCCCCACTGCGTGGCCACAGGCTACATGTGCAAATCGGAACTAAATGCCTGTTTCACCAAGGTGTTGGACCCTATGAACACGAACTCGCCTCTCACACACGGGTGTCTAGATCCCATAGCAAACGCTGCCGACGTGTGCAGTGCTAAGAACACAGATGCCCTGAGCAGGGGCTTGTCCACACTAGAATGTTGTCACGACGACATGTGTAACTACAGAGGACTACACGACCTGGCGCACACCAGAGAATCTACAgACCACGGCAGGTACCAGCCTGAGAGCAACAACCATAACCTGGTCACGCGGGTACAGGAGCTGGCCTCTGCCAAAGAGGTGTGGTTCAGGGCGGCGGTGATTGCGGTGCCTATCGCGGGAGGCCTCATCCTGGTTCTTCTCATCATGCTGGCTTTAAGGATGCTCCGCAGCGAGAACAAGCGGCTGCAGGACCAGAGGCAGCAGATGTTGTCACGGCTCCACTACAGCTTCCATGGCCACCACACTAAGAAGGGCCACGTGGCAAAGCTAGACTTGGAGTGTATGGTGCCTGTGACGGGCCACGAGAACTGCTGCCTCACCTGTGACAAGATGAGACAGGCAGACCTGGGAAATGACAAGATACTGTCACTGGTACACTGGGGGATGTACAGTGGGCACGGGAAGCTGGAGTTCGTATAACTTACTTTTCTAAGATCGTTTGACTTCACTTTATGTCCCACCACACCCTTCCCCACCCGCCCCCCAAAAAACAGCCAAGACTGCCTCCTCCACTCGTTGGGGTTTCTCTTTTAATTAAAAAATTAATCCCCTTTTTTGTCCATTGTACTTATCATTCCATTATTCAATGGAAGAAAAAAAGAGGACAGAATTGAACGCAAGCCTTGTGGTTTTTGCTAAAGGAGCACTTTACTTGAAAATTAAAGGCAAACCAATGAGGAGCTGAGCGGGCAGGGCTGAGCTGACGGATTGAAAGAGCTCTGTCAAGACCCTGTCTGCCTGTGCATCCTGGACTTTACACAGACTGCTGAAGGATTCCAAATCGGTCTTATTTGCACaattgtaaaaacaaaaaaacgttGTTTTGCTTAAAGAAAAGCTAAATAGGAGAAGAATTTTACACTGACACCAGGGtacaaaaaaaaactttttgaGGAGTATAGGTGACTTAAGGTGTGTACACTCCTCTGTACGTTTCTTGATCCAAGCTTATTGTAAagattgaaaatatatatatttttgtctgaAAGAAA
>XM_036944345.1
TCAACTCAAGAGCCTCTCCCCGAAGTCGACCAGTGAAGTGTTGATGCGAGAGTGAGCAACCATTTATTCACATTTCGTTGGTTTCGGATTATAAATGTTATGCACAACCATCATCGCGGGTGTCTGTGAAGTCGGAGTGGACAAGTAGTTACGAGATTTATCACTTTTTCTACTCatggaatgtattttttttcttattttcagCAGCTATAAACATTTCGTTTTTTTCCTGCAGAGCAATCCAAGTAAGGAGAAATACGGTGTTACTGTGATGCCCCCCACTGCGTGGCCACAGGCTACATGTGCAAATCGGAACTAAATGCCTGTTTCACCAAGGTGTTGGACCCTATGAACACGAACTCGCCTCTCACACACGGGTGTCTAGATCCCATAGCAAACGCTGCCGACGTGTGCAGTGCTAAGAACACAGATGCCCTGAGCAGGGGCTTGTCCACACTAGAATGTTGTCACGACGACATGTGTAACTACAGAGGACTACACGACCTGGCGCACACCAGAGAATCTACAgACCACGGCAGGTACCAGCCTGAGAGCAACAACCATAACCTGGTCACGCGGGTACAGGAGCTGGCCTCTGCCAAAGAGGTGTGGTTCAGGGCGGCGGTGATTGCGGTGCCTATCGCGGGAGGCCTCATCCTGGTTCTTCTCATCATGCTGGCTTTAAGGATGCTCCGCAGCGAGAACAAGCGGCTGCAGGACCAGAGGCAGCAGATGTTGTCACGGCTCCACTACAGCTTCCATGGCCACCACACTAAGAAGGGCCACGTGGCAAAGCTAGACTTGGAGTGTATGGTGCCTGTGACGGGCCACGAGAACTGCTGCCTCACCTGTGACAAGATGAGACAGGCAGACCTGGGAAATGACAAGATACTGTCACTGGTACACTGGGGGATGTACAGTGGGCACGGGAAGCTGGAGTTCGTATAACTTACTTTTCTAAGATCGTTTGACTTCACTTTATGTCCCACCACACCCTTCCCCACCCGCCCCCCAAAAAACAGCCAAGACTGCCTCCTCCACTCGTTGGGGTTTCTCTTTTAATTAAAAAATTAATCCCCTTTTTTGTCCATTGTACTTATCATTCCATTATTCAATGGAAGAAAAAAAGAGGACAGAATTGAACGCAAGCCTTGTGGTTTTTGCTAAAGGAGCACTTTACTTGAAAATTAAAGGCAAACCAATGAGGAGCTGAGCGGGCAGGGCTGAGCTGACGGATTGAAAGAGCTCTGTCAAGACCCTGTCTGCCTGTGCATCCTGGACTTTACACAGACTGCTGAAGGATTCCAAATCGGTCTTATTTGCACaattgtaaaaacaaaaaaacgttGTTTTGCTTAAAGAAAAGCTAAATAGGAGAAGAATTTTACACTGACACCAGGGtacaaaaaaaaactttttgaGGAGTATAGGTGACTTAAGGTGTGTACACTCCTCTGTACGTTTCTTGATCCAAGCTTATTGTAAagattgaaaatatatatatttttgtctgaAAGAAA

Function

NR:

description
BMP and activin membrane-bound inhibitor homolog isoform X1

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944343.1 False 1829 mRNA 0.46 3 38576635 38580756
XM_036944344.1 False 1515 mRNA 0.47 3 38576635 38580756
XM_036944345.1 True 1520 mRNA 0.47 3 38576635 38580756

Neighbor

gene id symbol gene type direction distance location
LOC110490038 LOC106590019 coding upstream 8156 38494289 ~ 38568479 (+)
LOC110490034 rab18 coding upstream 538610 38018211 ~ 38038025 (+)
LOC110490033 LOC106590025 coding upstream 558647 37974722 ~ 38017988 (+)
nrp1a LOC106590027 coding upstream 616042 37847266 ~ 37960593 (+)
LOC110490032 cul2 coding upstream 1674571 36869213 ~ 36902064 (+)
LOC110490723 LOC106612786 coding downstream 274494 38855250 ~ 38856108 (+)
LOC110490726 LOC106600248 coding downstream 502058 39082814 ~ 39084700 (+)
LOC110490841 NA coding downstream 507317 39086859 ~ 39089636 (+)
brca2 NA coding downstream 966588 39547344 ~ 39589108 (+)
LOC110490049 LOC106612364 coding downstream 1068614 39649370 ~ 39684044 (+)
G1289696 NA non-coding upstream 6011 38570346 ~ 38570624 (+)
G1289678 NA non-coding upstream 99255 38477165 ~ 38477380 (+)
G1289676 NA non-coding upstream 100394 38475858 ~ 38476241 (+)
G1289500 NA non-coding upstream 380535 38195782 ~ 38196100 (+)
G1289700 NA non-coding downstream 3758 38584514 ~ 38585455 (+)
G1289707 NA non-coding downstream 11736 38592492 ~ 38592692 (+)
G1289708 NA non-coding downstream 12607 38593363 ~ 38593574 (+)
G1289740 NA non-coding downstream 49670 38630426 ~ 38630655 (+)
G1289855 NA non-coding downstream 223876 38804632 ~ 38809711 (+)
G1289491 NA other upstream 392632 38183436 ~ 38184003 (+)
G1287489 LOC106590045 other upstream 2066123 36509078 ~ 36510512 (+)
G1286648 LOC106590042 other upstream 2483239 36035583 ~ 36093396 (+)
G1284354 NA other upstream 4464364 34111807 ~ 34112271 (+)
G1282302 NA other upstream 5878599 32687558 ~ 32698036 (+)
G1289710 NA other downstream 14124 38594880 ~ 38600241 (+)
G1290549 LOC106590036 other downstream 456249 39037005 ~ 39061248 (+)
G1290614 NA other downstream 545516 39126272 ~ 39127009 (+)
G1291464 NA other downstream 1486802 40067558 ~ 40067907 (+)
LOC110490048 il-1racp other downstream 1539513 40089464 ~ 40132600 (+)

Expression


Co-expression Network