LOC110490723 (LOC106612786)


Basic Information

Item Value
gene id LOC110490723
gene name LOC106612786
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 38855250 ~ 38856108 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110490723
ATGACAATAAATTGCAAAGGATCCTTAATCAACGTAGACAAACTGAGCGTGATATATAATCGTATAGTACATAGCAAACTCACTTGGGTTATAGTGGCTTTGAGGCGAGCCTTGCATTTTGTTGTCAAAGTGGGTGACAGAAGCAAAACGGCCACCTTTTACCGAGATGTGCTCGGCATGAAGATTTTGCATCACAAAGACTTTGAAGAAGGATGTAAGGCAACATGTAAGGGCCCTTATGATGGAAAATGGAGCAAGAAAATGGTCAGCTTTGGCCCAGAGGATGATGACTTTGTGGCTGAACTGATCTACAATTATGGAATGGGACAATATCGCCTAAGCAATGACTTCCTCGGTTTGACTCTGCAGTCTAGCCAGGCTGTCAGCATTGCTAAGCGGCTTGGTTGGCCACTCACTGAGGGTGGAAAGGGCATCTATCTGGCTGAGGCCCCAGGAGGTTATCGCTTCTACCTGGTGGACAAAGAACAGCCTCCCAATGATCCTGTACAGAAGGTGTGTCTTGCAGGGTCTGACCTGCAGAAAGCAATACACTGCTGGTCCTCCCTTCAGGGGATGAAGGTGAAAGAGCATTTAGGAGAAGAAGACTGTGCTGATGGGATTTGCAGACACTCAGTGTAAACTAGAGCTTCACAACATTGTTGGCACAGTAGATCATGGGACAGCCTTCGGGCATATAGCATTTTCCTGTCCACATGAGCAGTTGGCAGATCTTGAAGCCTTGATGACAAAAGGAAACCATAAAATCCTTACTATCTTGATTAGTCTGGAAACCCCTAGGAAGGCTACAGTAGAAGTGGTCATTTGGTCTGATGTCCATGAGAGCTGCATTGTTGTTTGA

Function

NR:

description
PREDICTED: glyoxalase domain-containing protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110490723 True 859 mRNA 0.46 1 38855250 38856108

Neighbor

gene id symbol gene type direction distance location
LOC110490039 LOC106590018 coding upstream 274494 38576635 ~ 38580756 (+)
LOC110490038 LOC106590019 coding upstream 286771 38494289 ~ 38568479 (+)
LOC110490034 rab18 coding upstream 817225 38018211 ~ 38038025 (+)
LOC110490033 LOC106590025 coding upstream 837262 37974722 ~ 38017988 (+)
nrp1a LOC106590027 coding upstream 894657 37847266 ~ 37960593 (+)
LOC110490726 LOC106600248 coding downstream 226706 39082814 ~ 39084700 (+)
LOC110490841 NA coding downstream 231965 39086859 ~ 39089636 (+)
brca2 NA coding downstream 691236 39547344 ~ 39589108 (+)
LOC110490049 LOC106612364 coding downstream 793262 39649370 ~ 39684044 (+)
LOC110490050 LOC106612350 coding downstream 1056334 39845713 ~ 39929225 (+)
G1289875 NA non-coding upstream 14264 38840771 ~ 38840986 (+)
G1289855 NA non-coding upstream 45539 38804632 ~ 38809711 (+)
G1289740 NA non-coding upstream 224595 38630426 ~ 38630655 (+)
G1289708 NA non-coding upstream 261676 38593363 ~ 38593574 (+)
G1289707 NA non-coding upstream 262558 38592492 ~ 38592692 (+)
G1289910 NA non-coding downstream 28576 38884684 ~ 38884898 (+)
G1289912 NA non-coding downstream 30619 38886727 ~ 38886952 (+)
G1289920 NA non-coding downstream 42643 38898751 ~ 38899051 (+)
G1289928 NA non-coding downstream 59959 38916067 ~ 38916455 (+)
G1289929 NA non-coding downstream 61135 38917243 ~ 38917553 (+)
G1289710 NA other upstream 255009 38594880 ~ 38600241 (+)
G1289491 NA other upstream 671247 38183436 ~ 38184003 (+)
G1287489 LOC106590045 other upstream 2344738 36509078 ~ 36510512 (+)
G1286648 LOC106590042 other upstream 2761854 36035583 ~ 36093396 (+)
G1284354 NA other upstream 4742979 34111807 ~ 34112271 (+)
G1290549 LOC106590036 other downstream 180897 39037005 ~ 39061248 (+)
G1290614 NA other downstream 270164 39126272 ~ 39127009 (+)
G1291464 NA other downstream 1211450 40067558 ~ 40067907 (+)
LOC110490048 il-1racp other downstream 1264161 40089464 ~ 40132600 (+)
G1293072 NA other downstream 2727265 41583216 ~ 41589030 (+)

Expression


Co-expression Network