Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110490049 |
| gene name | LOC106612364 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048579.1 |
| NCBI id | CM023233.2 |
| chromosome length | 81569517 |
| location | 39649370 ~ 39684044 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| protein IWS1 homolog isoform X1 |
| id | description |
|---|---|
| K17498 | SPN1, IWS1; transcription factor SPN1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021563169.2 | False | 2728 | mRNA | 0.51 | 16 | 39649370 | 39684044 |
| XM_036944352.1 | False | 2788 | mRNA | 0.52 | 17 | 39649370 | 39684044 |
| XM_036944354.1 | False | 2728 | mRNA | 0.52 | 16 | 39649370 | 39684044 |
| XM_036944353.1 | True | 2769 | mRNA | 0.52 | 17 | 39649379 | 39684044 |
39,648,000
39,652,000
39,656,000
39,660,000
39,664,000
39,668,000
39,672,000
39,676,000
39,680,000
39,684,000
39,688,000
39,692,000
39,696,000
39,700,000
39,704,000
39,708,000
39,712,000
39,716,000
39,720,000
NC_048579.1
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| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| brca2 | NA | coding | upstream | 60262 | 39547344 ~ 39589108 (+) |
| LOC110490841 | NA | coding | upstream | 559734 | 39086859 ~ 39089636 (+) |
| LOC110490726 | LOC106600248 | coding | upstream | 564670 | 39082814 ~ 39084700 (+) |
| LOC110490723 | LOC106612786 | coding | upstream | 793262 | 38855250 ~ 38856108 (+) |
| LOC110490039 | LOC106590018 | coding | upstream | 1068614 | 38576635 ~ 38580756 (+) |
| LOC110490050 | LOC106612350 | coding | downstream | 228398 | 39845713 ~ 39929225 (+) |
| LOC110490053 | fgf12 | coding | downstream | 252842 | 39936886 ~ 40053076 (+) |
| LOC110490048 | il-1racp | coding | downstream | 405420 | 40089464 ~ 40132600 (+) |
| tfdp2 | LOC105026801 | coding | downstream | 1346332 | 41030376 ~ 41088538 (+) |
| LOC110490065 | LOC106580667 | coding | downstream | 1409486 | 41093530 ~ 41156857 (+) |
| G1290749 | NA | non-coding | upstream | 27495 | 39621631 ~ 39621875 (+) |
| G1290739 | NA | non-coding | upstream | 40439 | 39608497 ~ 39608931 (+) |
| G1290735 | NA | non-coding | upstream | 45501 | 39603475 ~ 39603869 (+) |
| G1290724 | NA | non-coding | upstream | 96222 | 39552805 ~ 39553148 (+) |
| G1290723 | NA | non-coding | upstream | 99313 | 39549487 ~ 39550057 (+) |
| G1290854 | NA | non-coding | downstream | 126793 | 39810837 ~ 39811038 (+) |
| G1290856 | NA | non-coding | downstream | 130880 | 39814924 ~ 39815258 (+) |
| G1290864 | NA | non-coding | downstream | 140922 | 39824966 ~ 39825165 (+) |
| G1290867 | NA | non-coding | downstream | 143414 | 39827458 ~ 39827684 (+) |
| G1290868 | NA | non-coding | downstream | 145054 | 39829098 ~ 39829301 (+) |
| G1290614 | NA | other | upstream | 522361 | 39126272 ~ 39127009 (+) |
| G1290549 | LOC106590036 | other | upstream | 611711 | 39037005 ~ 39061248 (+) |
| G1289710 | NA | other | upstream | 1049129 | 38594880 ~ 38600241 (+) |
| G1289491 | NA | other | upstream | 1465367 | 38183436 ~ 38184003 (+) |
| G1287489 | LOC106590045 | other | upstream | 3138858 | 36509078 ~ 36510512 (+) |
| G1291464 | NA | other | downstream | 383514 | 40067558 ~ 40067907 (+) |
| G1293072 | NA | other | downstream | 1899329 | 41583216 ~ 41589030 (+) |
| G1293295 | NA | other | downstream | 2224990 | 41909034 ~ 41909611 (+) |
| G1294319 | NA | other | downstream | 3080809 | 42764853 ~ 42767937 (+) |
