LOC110490050 (LOC106612350)


Basic Information

Item Value
gene id LOC110490050
gene name LOC106612350
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 39845713 ~ 39929225 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563172.2
tggcTCAAGTGATTTGAAAGCTATTGCGCGAATATCCAACTTCAAACGGTCTTTACCTCGGTGACATGTTGCATGTTAAGAACCTGGACTTTTAATTTGGTTATGAACTGCACAGCACAAAAGGGAAGGAAATCGGAGAAAGTAGGCATCATTGTGAGTGCGGCTGAGCGTTACAAGGAATCCTTTCGATTAATGCTCCTTCCTCACGGGTACCTGAGCCTGTGTAAGGACGTTATTTGAATGTGACTGAAGGAGTGGGTAGTTATGTATTCAAACAACCATCAATGGAATAGTATTTTGGTTTTGTTTCAATACCCCGTGTAGTAGTTGGCGGCAATACACCAATAGGTGTAGTCTGCCATAAAACTTTAAAGAAGGTCTTCCAAACAGATGTCAGATAATAGGCTGGGCAACGTATCAGCTACATACGTGTGCCAGTGCAATTCCTTCGTCGCTCTGGAGGAGCTGATTCGGCTAGCGTCATCATCAGCACCATCATCGACTTGACTTCATCACTCTCACATTAGCCATGACAATTACTTTGCCTACGATTCGACAGCCACCCCCAACAGTCATTGAACTACAGCCACGCCGATGAGAGCACTTTGCACACCCCGCATAAAATTTAAAGGAACTCCGATTTGTTTGGTGCAAGCAGCGGCCGATGTTCTGAACTGAAGCCGAGGTAGCCAGTGTGGGGCCTTGGGACGCCTGCGTTCACATTGCTGTTGTTTTTTATATCTTGCAAACATGGCGGCCCCTGCGCTAACCAGCCGGGCTGGGTCCGTAAATAGCTTGGGAAACAGCCCCACTGCGACTCCCAGCTCCACGAACAATAACAACAAGATCATCCCAAGCTACCCCGAGCTCGATTTCAGGTCCGGTGCCAGAATCGAGGATTTGAACCGATTGATTCTGGAATTTAGTAAACACGATCAGCGAGAATATGACGACCAGCGAGCGCTCGAGATTCACACCGCCAAGGATTTCATTTTCTCCATGCTCGGTATGGTGCAGAAACTGGACCAGAAGCTCCCTGTGGCCAACGAGTACCTGCTGCTGTCAGGTGGTGTGCGGGAGGGCGTGGTCGACATGGACCTAGACGAGCTTAGTGTTTACGCCCGTGGCACCGACTATGACATGGACTTTACCCTCCTCGTGCCTGCGCTCAAGCTGCACGACCGCAACCAGCCGGTCACTCTGGACATGCGCCACTCAGCCCTGTGCCACTCGTGGCTGAGCCTGCGCCTCTTCGACGAGGGCACCATCAACAAGTGGAAGGACTGCTGCACAGTGGTAGACCACATCAATGGCGCCACCAACTACTTCTTCTCACCCACACTGGTGGCTGACTGGTTCTACGAGTCCATCAGCGTGGTCCTGGTGGAGATCCAGAAGAAGCCCCAGCGCGGCATGCCCCGCGTGGAGAAGGTGGAGCGGAACGGCACAATCATCTCCGTCATCCTGGGCGTGGGCAGCAGCCGCATGCTCTATGACATCGTGCCTGTGGTCTCCTTCAAGGGATGGCCAGCGGTGGCCCAGAGCTGGCTGATGGAGAACCACTTCTGGGACGGCAAGATCACAGAGGAGGAGGTGATCAGCGGCTTCTACCTGGTGCCTGCCTGCTCCCACAAGGGCCGTAAGGAGAATGAGTGGCGCCTGTCTTTCGCCCGCAGCGAAGTGCAGCTCAAGAAGTGCATCTCGGCCAGCCTGATGCAGGCCTACCAGGCGTGCAAGGCCATCATTATCAAGCTGCTGTCAAGGCCCAAGGCCATCAGCCCCTACCACCTGCGCAGCATGATGTTGTGGGCCTGCGATCGGCTCCCCGCCACCTACCTGTCCCAGGAAGACTTTTCAGCCCACTTCCTGCTAGGCCTCATTGACGACCTGCAGAACTGCCTGGTCAACAAGATGTGCCCCAACTACTTCATCCCACAGTGCAACATGCTAGAGCACCTGTCGGACGAGATGGCCATGCTCCACGCCCGCAAGCTCAGCTCGGTGCGCTCCGACCCGGCCGAGCACCTGCGCACTACCATTGAGCACGCCAAGGCGGCCAACCGACTGACCCTGGAACTGCATTGGCGCGGCAGTGCCTCAAACCTGCCGTCACCACAGTCGGACGCGGGCGGCGAGCACCAGCCGGATGACCGCTTGGCTAAGAAGCTGCAGCAGCTGGTGACAGAGAACCCTGGAAAGTCCATCTCGGTGTTCATCAACCCCGATGACGTGACGCGGCCGCACTTCCGCATCGACGACAAGTTCTTCTGAGACTTCAAAATAGAAAAAAGCTATTCTTCTCCTCCCCCCACATCACCCATTCTCCTTTTGACTAGATCGATCGGTCGAGTCGTCAATTTAGTCGGTTTCCCAAGTAACGGTCGCCACAGAGCATTGTGAGGTGCTTTTGTGCAATGGTGTCTTCCCATTTTGTTTACCTGTCCCCACACCCCACCAACCCTACAGTGCCCGTGTCACCTTGAGAAGGCCTTTACAGGACTACATGAAACAGGTGGAAGAAGAGGTACTGCGTCTTTCCTCGGAAAGTTAAGGAATGGCTTAGTCCCTGTAGGGGAACTGATGGTACTAACGCCATAACTGTACATAAAGAGAGTTGAGTAGATATGTGTGTGAGTGGAAATTGGTATTATTTTGCACAGAATGTAGAGGCACACAGTTATGGTGGAAGTTGTGATGTGAAGTCTGAAATGTTGCATATCTTTTAGGAAGGCAATGTCAATGGTCTTTTTTTTCTCTATTGGGCAAAATGCTCTGAATTAATACCTACTGGTTTAGAGTTGTTATTCCAATAAGCTGTATCGCAATGACAAGATGTTTCTAACTTTAGATTCTCTGTGCATTCATGTCCTATGTGTATAGTGAACAGTTCCAGACGTATCCAGAATATGCCAAAAACCTGCAGATATCTGACCGGCAATGTGATACACATATCTTCATCCTCAAGTGCAATTagtaaacaaaaacacacacacacacacacacacacacaaaacaccacaccacacatacaaGTGCTAACACTCATCGTACACACTCCTGATCAGTGAAATGGTGTATTTGTTACGTATTTGTGATATTCCAGAACTCTGGGACCTTgtccttttgtttgtttgtgttataTGGAACTTGGAAACATTTGACTGTGATTCTTATTTTCCATATTGCTGCTGACCTTATGAAGATGTTTTATGATTGATTGGTTATGCAAATTAAGTGAACAAACACACAATTATGTATTTTAATTGGACATGGGCGTAGCTACTGTGTACATAGTATTGTAAAGCAGCAGTGGGACCCTGCCTGTATCATTTGTATGGACCAATCTGGCAGCGGCATTGTCAGCACCAACAGATCGCATGGCCTGAGGTTCTTCAAATCCTGTTGAGTCAAACCTGTCATGGACTAAATGAGCAACCTCACCATCGGCAGGGATCATTttctcccaagtggcgcagcggtctaaggcactgcatctcattgcaagaagcatcactgcagtccctgggtcaaatccaggctgcatcacatccggccatgattgggagtcccatagggcggcgcacaattggcccagcgtcgtcttggtttggccggggtaggccgtcattgtaaataagaatttgttcttaactgacttgcctagttaaataataaaataaaaaaacacactgcCTTACCATCAATTCGGACTAATCACTGGAGTGGCCTGAATAATGTGTTCTATGCCTTTCTAAAGGCATACTGGCTGCATACCGGGCTGACTACGTTGCATACGCCTGCGAAATCTCACAAAGCTGTCATATCACATCATATGAGCAATCTGATGCCTGTCTGTTCAAATCGATTGACCATGGGTTGATGCAATGCAATATCTGCAATGTAGTTAGCCTGAAACGTGACCATACTGTATGAGAGGGAGAGCAAGTGATCCAATGATCAAATTATGTGTAGATGGTAACACTATAATCaagctaaaatgtaattaaacataTTTAACAACAACTCTAAAGAGAAACTGCTTGAAAATAATGTATTAAACAATTTATATAACATTTAACAGTTGCTTGTCTGATGCACATTCATGATACAGTATGTTGCAAACAATATCAATTTGTGTGATGAATAAAGATGTACAGGATCCCA
>TU1473183
AACTTTGCGTTTATTAGAATGTTTACATTGCAAAAAGTGACAATTATCTTTCATAACATTAGAGGTATCGGATCCAGCCAAATAGATTCCAGAACAAAACAGTACAAAACGGAGAGGTGCCTAATCCTGTTTGGGCAGGATCCGGTTCAAATTAAGCACTGGAATAGATCATTGTAATACTTGTTTATTAATTGTATAATAATAGAGCTTGTCAGTTGAATGAGTGACAAACCAACTGTAGCTGTACTAAGAAGAGCAACCAGATATAACGTCAAACTCATAGTTTTAAACTTGATTTCCAAGGGCTGGACAAAATTCACacatggcaacaacaaaaaaggccaAAGAACGTTGGCTGATCTGGAACACTATTGTGAAGCCATGTCAAAAGAATTGAAACAAACTGTTGCTGAGCCTCTCCTCACTGGAGTGATGCTGAGAATAAAATGTTCCCTAAATGGCACCAAAAAATGTCTACCTTATTGTATTTTGCCAATACAATCTGTTATTAGGATGAAACTGAAAAATAACAACTCCTGAGTTGCCAACTCTCACGCATTGACCGTGAGACACACGGTAGCGGTGTGaccaggcagtggctcgggtggttgatgtccttgattatctttttggccttcctgtgacatcgggtgctgtaggtgtcatggaggacaggtagtttgcccccggtgatgggtTGTGcaaaccgcaccaccctctggagagccttgggGTTTGAGGCTCTCCAAATTGCCGTGTGCCGCTTAGGCCACCCATTGTGACTCGCTCGTGGGCATTCTGGCAGTATGTTTGATTGTGCGTTAAGAATTCAGCatagcaagtttgtatgaaggtctAGTTATTAATGGGTACATAGTTCAATAGTAATATCCTCTAAATGCTCTGGTGATAAACTTTTTTGCCCTGTTTCCAATTGTACAGATAGCTGGGAGgacctattcaagtaagtaaatacattttgaatatgtataaaacatgtattattagctaactagctaaagtgcaggctaactcaaatgagctgctaaatgagctagctagttggctagctaacttcacatactgtatagatagctagctaagtgaattaaatatcaccatctacctaacttcatattagctagctatattgatgtatttatcactgtaaaaaaaaaatattaatttgtagataggtagctagctaacagccatggaTGAGGGTGATAGGATAGAAGCCTCAACTATCAGTGAGCGAGTAGGCTATTCTGGATAGGGTAGGTACTATGAGgtttctgtgttatgcactatagcccatTACCATATATattattgaatattatctgctgttggcttgtgtggtatgtatgtgttatacaacatagctgacttgaaacattgttaaaaGTGTCAGGGCCAGGGgactttctcatgatggaaaaatacagaagacAGGGCACATTCAGAGCGTGGGGTTGCAGAACAAgcggtcttttgttagataacaggagccaggtgcgagaCCCAAGTAACGGTCGCCACAGAGCATTGTGAGGTGCTTTTGTGCAATGGTGTCTTCCCATTTTGTTTACCTGTCCCCACACCCCACCAACCCTACAGTGCCCGTGTCACCTTGAGAAGGCCTTTACAGGACTACATGAAACAGGTGGAAGAAGAGGTACTGCGTCTTTCCTCGGAAAGTTAAGGAATGGCTTAGTCCCTGTAGGGGAACTGATGGTACTAACGCCATAACTGTACATAAAGAGAGTTGAGTAGATATGTGTGTGAGTGGAAATTGGTATTATTTTGCACAGAATGTAGAGGCACACAGTTATGGTGGAAGTTGTGATGTGAAGTCTGAAATGTTGCATATCTTTTAGGAAGGCAATGTCAATGGTCTTTTTTTTCTCTATTGGGCAAAATGCTCTGAATTAATACCTACTGGTTTAGAGTTGTTATTCCAATAAGCTGTATCGCAATGACAAGATGTTTCTAACTTTAGATTCTCTGTGCATTCATGTCCTATGTGTATAGTGAACAGTTCCAGACGTATCCAGAATATGCCAAAAACCTGCAGATATCTGACCGGCAATGTGATACACATATCTTCATCCTCAAGTGCAATTagtaaacaaaaacacacacacacacacacacacacacaaaacaccacaccacacatacaaGTGCTAACACTCATCGTACACACTCCTGATCAGTGAAATGGTGTATTTGTTACGTATTTGTGATATTCCAGAACTCTGGGACCTTgtccttttgtttgtttgtgttataTGGAACTTGGAAACATTTGACTGTGATTCTTATTTTCCATATTGCTGCTGACCTTATGAAGATGTTTTATGATTGATTGGTTATGCAAATTAAGTGAACAAACACACAATTATGTATTTTAATTGGACATGGGCGTAGCTACTGTGTACATAGTATTGTAAAGCAGCAGTGGGACCCTGCCTGTATCATTTGTATGGACCAATCTGGCAGCGGCATTGTCAGCACCAACAGATCGCATGGCCTGAGGTTCTTCAAATCCTGTTGAGTCAAACCTGTCATGGACTAAATGAGCAACCTCACCATCGGCAGGGATCATTttctcccaagtggcgcagcggtctaaggcactgcatctcattgcaagaagcatcactgcagtccctgggtcaaatccaggctgcatcacatccggccatgattgggagtcccatagggcggcgcacaattggcccagcgtcgtcttggtttggccggggtaggccgtcattgtaaataagaatttgttcttaactgacttgcctagttaaataataaaataaaaaaacacactgcCTTACCATCAATTCGGACTAATCACTGGAGTGGCCTGAATAATGTGTTCTATGCCTTTCTAAAGGCATACTGGCTGCATACCGGGCTGACTACGTTGCATACGCCTGCGAAATCTCACAAAGCTGTCATATCACATCATATGAGCAATCTGATGCCTGTCTGTTCAAATCGATTGACCATGGGTTGATGCAATGCAATATCTGCAATGTAGTTAGCCTGAAACGTGACCATACTGTATGAGAGGGAGAGCAAGTGATCCAATGATCAAATTATGTGTAGATGGTAACACTATAATCaagctaaaatgtaattaaacataTTTAACAACAACTCTAAAGAGAAACTGCTTGAAAATAATGTATTAAACAATTTATATAACATTTAACAGTTGCTTGTCTGATGCACATTCATGATACAGTATGTTGCAAACAATATCAATTTGTGTGATGAATAAAGATGTACAGGATCC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563172.2 False 4164 mRNA 0.49 2 39912442 39929225
TU1473183 True 3316 lncRNA 0.41 2 39845713 39929223

Neighbor

gene id symbol gene type direction distance location
LOC110490049 LOC106612364 coding upstream 228398 39649370 ~ 39684044 (+)
brca2 NA coding upstream 323334 39547344 ~ 39589108 (+)
LOC110490841 NA coding upstream 822806 39086859 ~ 39089636 (+)
LOC110490726 LOC106600248 coding upstream 827742 39082814 ~ 39084700 (+)
LOC110490723 LOC106612786 coding upstream 1056334 38855250 ~ 38856108 (+)
LOC110490053 fgf12 coding downstream 7661 39936886 ~ 40053076 (+)
LOC110490048 il-1racp coding downstream 160239 40089464 ~ 40132600 (+)
tfdp2 LOC105026801 coding downstream 1101151 41030376 ~ 41088538 (+)
LOC110490065 LOC106580667 coding downstream 1164305 41093530 ~ 41156857 (+)
trnap-ugg-11 NA coding downstream 1307761 41236986 ~ 41237057 (+)
G1290849 NA non-coding upstream 17580 39885623 ~ 39894862 (+)
G1290883 NA non-coding upstream 37812 39869833 ~ 39874630 (+)
G1290880 NA non-coding upstream 72292 39839948 ~ 39840150 (+)
G1290874 NA non-coding upstream 78678 39833488 ~ 39833764 (+)
G1290871 NA non-coding upstream 80829 39831325 ~ 39831613 (+)
G1291447 NA non-coding downstream 129733 40058958 ~ 40059184 (+)
G1291457 NA non-coding downstream 135045 40064270 ~ 40064490 (+)
G1291466 NA non-coding downstream 139256 40068481 ~ 40068826 (+)
G1291485 NA non-coding downstream 149198 40078423 ~ 40078746 (+)
G1290614 NA other upstream 785433 39126272 ~ 39127009 (+)
G1290549 LOC106590036 other upstream 874783 39037005 ~ 39061248 (+)
G1289710 NA other upstream 1312201 38594880 ~ 38600241 (+)
G1289491 NA other upstream 1728439 38183436 ~ 38184003 (+)
G1287489 LOC106590045 other upstream 3401930 36509078 ~ 36510512 (+)
G1291464 NA other downstream 138333 40067558 ~ 40067907 (+)
G1293072 NA other downstream 1654148 41583216 ~ 41589030 (+)
G1293295 NA other downstream 1979809 41909034 ~ 41909611 (+)
G1294319 NA other downstream 2835628 42764853 ~ 42767937 (+)
G1290868 NA non-coding upstream 16412 39829098 ~ 39829301 (+)
G1290867 NA non-coding upstream 18029 39827458 ~ 39827684 (+)

Expression


Co-expression Network