LOC110490053 (fgf12)


Basic Information

Item Value
gene id LOC110490053
gene name fgf12
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 39936886 ~ 40053076 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563178.2
ACTCCAACAGGGGAGTCTGTCGTGACGTCAATTCTGTATTTCATAGGAGCCCGAGCTGCAGCATAGACTTCACCACCAAGGCGAGAGGACAGCTCCCGATAAACAGCGTGCGGACACTGAAGCAGACAAACCAGGAGGGAAGAAGAACCACATCCCGACCAGAACAGCTCTGACATCTCCCAGAAACGAAGCGTCTCTAACTTCCCTCCCTGATCAACCTAATCACAACGGGAGATGGAGATCATTAAAGTAGATAAAGCAGACAAAGCACCCGAGCCGCAGCTGAAGGGCATTGTGACGCGACTGTTCAGCGAGCAGGGCTTCTACCTGCAGATGAAGCCGGACGGCACCATAAATGGGACCAAGGACGAGAACAGCGACTACAcTCTGTTTAACCTCATCCCGGTGGGGCTGCGGGTGGTAGCCATCCAGGGGGTGAAGGCCGGCCTCTACGCAGCCATGAACGGAGAGGGCTTCCTCTACACCTCAGACTTGTTCACAGTAGAGGCGAAATTCAAGGAGTCTGTGTTTGAGAACTACTACGTCATCTACTCATCAACACTGTACCGGCAGCACGAATCTGGCAGGGCCTGGTACATGGGCCTCAACAAGGATGGCGTGGTCATGAAGGGCAACCGGGTGAAGAAGACAAAGCCATCTTCACACTTTGTGCCCAGACCCATCGAAGTTTGCATGTACAAAGAGCCATCGCTGCATGACATCGAGGAGAAGGGCCGCTCACGGAAAGACTCGGGAACTGAGGCTCCCGCTCTCCTAAACGGAGGAGAAAAAGTGGCGGGCCAGGACTCCACAGGGCAGGACGGTGGCTCATAGCCTGCACATCGCTCCATTGATTTCTTACACCTTGTTCAACGACAACAACAACGACGATAAATGAGAACacaacaaaatataaaaaataaatatattttaaaatcagGACGTTGAATTGACATTTTATGCAAAAGCCTGATGCGAGTGTGGCACCAGGAAGCTCATCCTCCTTATCATGACAATGTCAATGTTTCAAAGTCAAGCTCTAAAATAAGTTTTAAACCATGCTAGTTCACACATCTTGATTTAATGAATGCGACAGCACTTTCATTGTGTTGTTATAATCATGAATAAGAATTGTATTGTAATTgatttagggctctattcaatctgatcGACTTTTGTCGGCATACGCATAGCGGTCGTCTTGGCGGTGTCGGAGATGGAACTGCGCTAGAGCTGTCAAATCGACATgcggctcctggcattatacctaaagcagacattgccattaagagaaatcccatgcagccttgtttacaagttcgaACACAGGAATGTGagattaggctgatagaaatcctcataATTTAGTTTAAAGATTTTCAATTTGAGCGTCATATTTTCTCTATATCCTACACTTTCTCATTCTGAACTCGGGTGTGGCTTCATGACAATGATCAAGAGCAGCTGCTTAcagatttgacagctcca
>XM_021563177.2
TCCCGATAAACAGCGTGCGGACACTGGTAGGCTTAATGCACACGCGTGGACAGACACAGCGGTCAATTTGCTTGGTCGGAAATCACCCCAAAATATCCGAGTTAGCCATTTTGCCCTACACAATATCGACTCACGGACAGTCCGGCCATTGATAAACCAGCTGTTCTCACTGGTCACGCTTGTTGATTACAGAAGCAGACAAACCAGGAGGGAAGAAGAACCACATCCCGACCAGAACAGCTCTGACATCTCCCAGAAACGAAGCGTCTCTAACTTCCCTCCCTGATCAACCTAATCACAACGGGAGATGGAGATCATTAAAGTAGATAAAGCAGACAAAGCACCCGAGCCGCAGCTGAAGGGCATTGTGACGCGACTGTTCAGCGAGCAGGGCTTCTACCTGCAGATGAAGCCGGACGGCACCATAAATGGGACCAAGGACGAGAACAGCGACTACAcTCTGTTTAACCTCATCCCGGTGGGGCTGCGGGTGGTAGCCATCCAGGGGGTGAAGGCCGGCCTCTACGCAGCCATGAACGGAGAGGGCTTCCTCTACACCTCAGACTTGTTCACAGTAGAGGCGAAATTCAAGGAGTCTGTGTTTGAGAACTACTACGTCATCTACTCATCAACACTGTACCGGCAGCACGAATCTGGCAGGGCCTGGTACATGGGCCTCAACAAGGATGGCGTGGTCATGAAGGGCAACCGGGTGAAGAAGACAAAGCCATCTTCACACTTTGTGCCCAGACCCATCGAAGTTTGCATGTACAAAGAGCCATCGCTGCATGACATCGAGGAGAAGGGCCGCTCACGGAAAGACTCGGGAACTGAGGCTCCCGCTCTCCTAAACGGAGGAGAAAAAGTGGCGGGCCAGGACTCCACAGGGCAGGACGGTGGCTCATAGCCTGCACATCGCTCCATTGATTTCTTACACCTTGTTCAACGACAACAACAACGACGATAAATGAGAACacaacaaaatataaaaaataaatatattttaaaatcagGACGTTGAATTGACATTTTATGCAAAAGCCTGATGCGAGTGTGGCACCAGGAAGCTCATCCTCCTTATCATGACAATGTCAATGTTTCAAAGTCAAGCTCTAAAATAAGTTTTAAACCATGCTAGTTCACACATCTTGATTTAATGAATGCGACAGCACTTTCATTGTGTTGTTATAATCATGAATAAGAATTGTATTGTAATTgatttagggctctattcaatctgatcGACTTTTGTCGGCATACGCATAGCGGTCGTCTTGGCGGTGTCGGAGATGGAACTGCGCTAGAGCTGTCAAATCGACATgcggctcctggcattatacctaaagcagacattgccattaagagaaatcccatgcagccttgtttacaagttcgaACACAGGAATGTGagattaggctgatagaaatcctcataATTTAGTTTAAAGATTTTCAATTTGAGCGTCATATTTTCTCTATATCCTACACTTTCTCATTCTGAACTCGGGTGTGGCTTCATGACAATGATCAAGAGCAGCTGCTTAcagatttgacagctcca
>XM_021563175.2
tggtggtgatgtgggGGTTTAGGGAGTTAGAGTTTTAGTGTTGCTGCAGCCAGGGCTAAATATGGCCAGACAGACCCACACCGAGTAGACTAGGACTGGTCAGCTAACCTATCCCTTTACAAGTGACATGGACAACTGACTTATACAAGTGCAGAGGGGTTGTGTAAGCAGCGGCAAAGGGGGGCGATAGCAGATTAAGGGATACAAACTGTGTCTTTATGGATGTCTCAGAGAGAGTTGAGGAGCCAGAAATGACTCGTTCGCTTGGTAGCCTGTTACGACGGTTGCTGTCCAAAGACagtaagggagaggaggaagacaaggAGGAAGGAACAGCAAAACCGGACAGCGATGAGCAGGAGCCGCAGCTGAAGGGCATTGTGACGCGACTGTTCAGCGAGCAGGGCTTCTACCTGCAGATGAAGCCGGACGGCACCATAAATGGGACCAAGGACGAGAACAGCGACTACAcTCTGTTTAACCTCATCCCGGTGGGGCTGCGGGTGGTAGCCATCCAGGGGGTGAAGGCCGGCCTCTACGCAGCCATGAACGGAGAGGGCTTCCTCTACACCTCAGACTTGTTCACAGTAGAGGCGAAATTCAAGGAGTCTGTGTTTGAGAACTACTACGTCATCTACTCATCAACACTGTACCGGCAGCACGAATCTGGCAGGGCCTGGTACATGGGCCTCAACAAGGATGGCGTGGTCATGAAGGGCAACCGGGTGAAGAAGACAAAGCCATCTTCACACTTTGTGCCCAGACCCATCGAAGTTTGCATGTACAAAGAGCCATCGCTGCATGACATCGAGGAGAAGGGCCGCTCACGGAAAGACTCGGGAACTGAGGCTCCCGCTCTCCTAAACGGAGGAGAAAAAGTGGCGGGCCAGGACTCCACAGGGCAGGACGGTGGCTCATAGCCTGCACATCGCTCCATTGATTTCTTACACCTTGTTCAACGACAACAACAACGACGATAAATGAGAACacaacaaaatataaaaaataaatatattttaaaatcagGACGTTGAATTGACATTTTATGCAAAAGCCTGATGCGAGTGTGGCACCAGGAAGCTCATCCTCCTTATCATGACAATGTCAATGTTTCAAAGTCAAGCTCTAAAATAAGTTTTAAACCATGCTAGTTCACACATCTTGATTTAATGAATGCGACAGCACTTTCATTGTGTTGTTATAATCATGAATAAGAATTGTATTGTAATTgatttagggctctattcaatctgatcGACTTTTGTCGGCATACGCATAGCGGTCGTCTTGGCGGTGTCGGAGATGGAACTGCGCTAGAGCTGTCAAATCGACATgcggctcctggcattatacctaaagcagacattgccattaagagaaatcccatgcagccttgtttacaagttcgaACACAGGAATGTGagattaggctgatagaaatcctcataATTTAGTTTAAAGATTTTCAATTTGAGCGTCATATTTTCTCTATATCCTACACTTTCTCATTCTGAACTCGGGTGTGGCTTCATGACAATGATCAAGAGCAGCTGCTTAcagatttgacagctcca
>XM_021563176.2
ACGGCAAATCAGGTTTCCAGAAAATCCGGAACAGCAGCCACTTCGATTATCAATAGCTTCTCACTGACATGTCCTGGAATCTCTTGCGCCCCAGGCTTTTCGCACCACTATAGCCAACCACCAAGGATGAACAAGGCGCATTACCTCATCCAcggtgatcctgtcactctactCTGCGGTTTAACTTTGGCGTGCGCGCTTGCACCAGAAGAGACATCGTTTTGTCTGCGAGTAAAACCGAAAGGAGGCATGGGCTATGGGAAATTATTCTGACGTCCTTGCAGCATAACTTGCAATTCATGGAGCCATGGGTGTTTTTGTTATCAATGAAAAATATCTCAAGATGTGTCGGTCTAATCCATCGCGTCCCTTTGTTGAGGCTTTGCTGCCGTTTTCGATCTGCTGAGGGAAGCCAGAGATCTGGATAGCACGGTGGTCGACCTGAGGTGGCTATGCTTCAATAACCTCCATCGCAATAGAGCGTGTCAGATTGCGTGAATTGACGAAGGAACACAATAACCCAAATCAATGAAGATTCTGAGGCTTTTCCTGAAGAAAGGTGCGCATATGCTGCAGTGTCTCTGTGGAAAGCGATCGAAGTCGACTACAACCACGAGCGAGCCGCAGCTGAAGGGCATTGTGACGCGACTGTTCAGCGAGCAGGGCTTCTACCTGCAGATGAAGCCGGACGGCACCATAAATGGGACCAAGGACGAGAACAGCGACTACAcTCTGTTTAACCTCATCCCGGTGGGGCTGCGGGTGGTAGCCATCCAGGGGGTGAAGGCCGGCCTCTACGCAGCCATGAACGGAGAGGGCTTCCTCTACACCTCAGACTTGTTCACAGTAGAGGCGAAATTCAAGGAGTCTGTGTTTGAGAACTACTACGTCATCTACTCATCAACACTGTACCGGCAGCACGAATCTGGCAGGGCCTGGTACATGGGCCTCAACAAGGATGGCGTGGTCATGAAGGGCAACCGGGTGAAGAAGACAAAGCCATCTTCACACTTTGTGCCCAGACCCATCGAAGTTTGCATGTACAAAGAGCCATCGCTGCATGACATCGAGGAGAAGGGCCGCTCACGGAAAGACTCGGGAACTGAGGCTCCCGCTCTCCTAAACGGAGGAGAAAAAGTGGCGGGCCAGGACTCCACAGGGCAGGACGGTGGCTCATAGCCTGCACATCGCTCCATTGATTTCTTACACCTTGTTCAACGACAACAACAACGACGATAAATGAGAACacaacaaaatataaaaaataaatatattttaaaatcagGACGTTGAATTGACATTTTATGCAAAAGCCTGATGCGAGTGTGGCACCAGGAAGCTCATCCTCCTTATCATGACAATGTCAATGTTTCAAAGTCAAGCTCTAAAATAAGTTTTAAACCATGCTAGTTCACACATCTTGATTTAATGAATGCGACAGCACTTTCATTGTGTTGTTATAATCATGAATAAGAATTGTATTGTAATTgatttagggctctattcaatctgatcGACTTTTGTCGGCATACGCATAGCGGTCGTCTTGGCGGTGTCGGAGATGGAACTGCGCTAGAGCTGTCAAATCGACATgcggctcctggcattatacctaaagcagacattgccattaagagaaatcccatgcagccttgtttacaagttcgaACACAGGAATGTGagattaggctgatagaaatcctcataATTTAGTTTAAAGATTTTCAATTTGAGCGTCATATTTTCTCTATATCCTACACTTTCTCATTCTGAACTCGGGTGTGGCTTCATGACAATGATCAAGAGCAGCTGCTTAcagatttgacagctcca
>XM_021563174.2
CAAACCGGGCGACGAAGAGCAGGCTTCACCAGTTGCTCTGATGGTACTTTTCACTACAGGCTACCGTGCGATTTGTGCTTAGATTTTTCCAAcagggcacagacgtcaattcacaTTGGTTCATATTAATTTGAAAGAATTTACGTGGAaataacgttgattcaaccagtgtgtgcccaatgTGTTTGAATTATGTCAGTTTAGGATACTCATTACCTGTGATTATGAAGGCGACATAGATTTTCGACGGTCCTCCAATTTGTTGTGACTCTCCGTTTTCCAGAGAACATTGGGTTTTCGATTTTGGATTATTTTTTACCTGGGGCTCGCGTGTCGAGCCCGTAGTTGAGCGAAAGACAATGCCGGCTGCGGGGCTAGTGAGGGAGCAGTGTGTCCGCGCACATCCAGTACGCTGCTGCCACTGCACTCAGATAGTTGTGGAATGTCGAGCACTGGAAATTTAAGAGGAATGAAAACGATGGATAATGAAACTATTTACGGGACATTTTATCTGGATACCTGGGAATAATCTGGACTGGAGATAGAGAGCAATACCTTGGACACATCTGCACAATATACATTTATTAATTAATGTATTTAGAGATATAGTAGCCTACCTATTTGTAAAGACTGCCAGTgcaatattttatatttatatcgATGTTGTTTCCATTATTTGGATGACAAATATGTTTGAGTTCAGCATTCAGCAAGTTATCATTTTATTCACCTTAACTACATATTTGTCATCATGGCGCACGTATGCAACCTCATGCATTGGACCAGCCATAATCAGCACCCTCAGCAATATCTTGACAACATCTCGCTCATAGAAGATTTTGAGACGATTCAAGTGGTCTACACTCAGGTTAATCTACCTGGGAGATGGCGGCGGCGCTCGCCAGCTCCCTGATACGTCAGAAACGTCAAGCAAGAGAGGGAAACAGCGAAAAGGTCGCCACTTCCAAACGGCGCACCAGTCCCAGCAAAGACCCCCGCTCCTTGTGCGAGAGGCATATATTTACTGTCTTCAGCAAAGTTCGGTTCTGCAGCGGCAAGAAAAGACCAGTCCGCAGGAAACCAGAGCCGCAGCTGAAGGGCATTGTGACGCGACTGTTCAGCGAGCAGGGCTTCTACCTGCAGATGAAGCCGGACGGCACCATAAATGGGACCAAGGACGAGAACAGCGACTACAcTCTGTTTAACCTCATCCCGGTGGGGCTGCGGGTGGTAGCCATCCAGGGGGTGAAGGCCGGCCTCTACGCAGCCATGAACGGAGAGGGCTTCCTCTACACCTCAGACTTGTTCACAGTAGAGGCGAAATTCAAGGAGTCTGTGTTTGAGAACTACTACGTCATCTACTCATCAACACTGTACCGGCAGCACGAATCTGGCAGGGCCTGGTACATGGGCCTCAACAAGGATGGCGTGGTCATGAAGGGCAACCGGGTGAAGAAGACAAAGCCATCTTCACACTTTGTGCCCAGACCCATCGAAGTTTGCATGTACAAAGAGCCATCGCTGCATGACATCGAGGAGAAGGGCCGCTCACGGAAAGACTCGGGAACTGAGGCTCCCGCTCTCCTAAACGGAGGAGAAAAAGTGGCGGGCCAGGACTCCACAGGGCAGGACGGTGGCTCATAGCCTGCACATCGCTCCATTGATTTCTTACACCTTGTTCAACGACAACAACAACGACGATAAATGAGAACacaacaaaatataaaaaataaatatattttaaaatcagGACGTTGAATTGACATTTTATGCAAAAGCCTGATGCGAGTGTGGCACCAGGAAGCTCATCCTCCTTATCATGACAATGTCAATGTTTCAAAGTCAAGCTCTAAAATAAGTTTTAAACCATGCTAGTTCACACATCTTGATTTAATGAATGCGACAGCACTTTCATTGTGTTGTTATAATCATGAATAAGAATTGTATTGTAATTgatttagggctctattcaatctgatcGACTTTTGTCGGCATACGCATAGCGGTCGTCTTGGCGGTGTCGGAGATGGAACTGCGCTAGAGCTGTCAAATCGACATgcggctcctggcattatacctaaagcagacattgccattaagagaaatcccatgcagccttgtttacaagttcgaACACAGGAATGTGagattaggctgatagaaatcctcataATTTAGTTTAAAGATTTTCAATTTGAGCGTCATATTTTCTCTATATCCTACACTTTCTCATTCTGAACTCGGGTGTGGCTTCATGACAATGATCAAGAGCAGCTGCTTAcagatttgacagctcca
>TU1473668
CGAGCTGCAGCATAGACTTCACCACCAAGGCGAGAGGACAGCTCCCGATAAACAGCGTGCGGACACTGGTAGGCTTAATGCACACGCGTGGACAGACACAGCGGTCAATTTGCTTGGTCGGAAATCACCCCAAAATATCCGAGTTAGCCATTTTGCCCTACACAATATCGACTCACGGACAGTCCGGCCATTGATAAACCAGCTGTTCTCACTGGTCACGCTTGTTGATTACAGAAGCAGACAAACCAGGAGGGAAGAAGAACCACATCCCGACCAGAACAGCTCTGACATCTCCCAGAAACGAAGCGTCTCTAACTTCCCTCCCTGATCAACCTAATCACAACGGGAGATGGAGATCATTAAAGTAGATAAAGCAGACAAAGCACCCGGCCTTCCGTTAACCAGGTCAACTCCCATTGGCCACAGCTTAACTAGCGACCTTATTGGTCAAAACTTAAACTTTAAAAGTAAACCAACCTATTCACTTAAATATTCAGAATTAATTATAACAAATAAACACAATACTTGGTTCTACCAAGGGTATTAcacaagcatgcgctgaccaactggcaagtgtcttcactgacattttcaaactctccctgtctgagtctgtaataccaacatgtttcaagcagaccaccatagtccctgtgcccaagaacactaaggtaacctgcctaaatgactaccgacctatagcactcaagtctgtagtcatgaaatgctttgaaaggctgatcatggctcacatcaacatcattatctcagaaaccctagacccactccattttGCATACCGCACgatcagatccacagatgatgcaatctctattgcactccacactgccctttcccacctggacaaaaggaacatctatttgagaatgggttgcatcactgcctggatggcaactactcggcctccgaccgcaaggcactacagagggtgctgcgtacagcccagtacataacCCGGGACAAtcgtcctgccatccaggacctctataccaaccggtgtcagaggaaggccctaaaaacagcttttacccccacgccataagactcctgaacagctaatcacatggctacccagaccatttgcattgcccccctcccttctacgctgctgctgctctctgttattatctatacatagtctctttaataactctacctacatgtacattttacctcgacaccggtgcccccgcacattgactttgtaccggtaccccctgtatatagcccagctattgttatttactgctgctctttaattatttgttattcttgacttttattttttttttaggtattttcttaaaactgcattgttggttaagggcttgtaaagtaagcatttcacacatg

Function

symbol description
fgf12 Enables heparin binding activity. Involved in regulation of neuronal action potential and regulation of voltage-gated sodium channel activity. Acts upstream of or within JNK cascade. Located in nucleus. Implicated in developmental and epileptic encephalopathy 47.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0008083 growth factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563178.2 False 1488 mRNA 0.48 6 39936886 40053076
XM_021563177.2 False 1561 mRNA 0.47 5 39936979 40053076
XM_021563175.2 False 1574 mRNA 0.48 5 39984540 40053076
XM_021563176.2 False 1833 mRNA 0.47 5 39992936 40053076
XM_021563174.2 False 2298 mRNA 0.46 5 40025369 40053076
TU1473668 True 1374 lncRNA 0.46 2 39936937 39940988

Neighbor

gene id symbol gene type direction distance location
LOC110490050 LOC106612350 coding upstream 7661 39845713 ~ 39929225 (+)
LOC110490049 LOC106612364 coding upstream 252842 39649370 ~ 39684044 (+)
brca2 NA coding upstream 347778 39547344 ~ 39589108 (+)
LOC110490841 NA coding upstream 847250 39086859 ~ 39089636 (+)
LOC110490726 LOC106600248 coding upstream 852186 39082814 ~ 39084700 (+)
LOC110490048 il-1racp coding downstream 36388 40089464 ~ 40132600 (+)
tfdp2 LOC105026801 coding downstream 977300 41030376 ~ 41088538 (+)
LOC110490065 LOC106580667 coding downstream 1040454 41093530 ~ 41156857 (+)
trnap-ugg-11 NA coding downstream 1183910 41236986 ~ 41237057 (+)
trnap-ugg-12 NA coding downstream 1185780 41238856 ~ 41238927 (+)
G1290849 NA non-coding upstream 42024 39885623 ~ 39894862 (+)
G1290883 NA non-coding upstream 62256 39869833 ~ 39874630 (+)
G1290880 NA non-coding upstream 96736 39839948 ~ 39840150 (+)
G1290874 NA non-coding upstream 103122 39833488 ~ 39833764 (+)
G1291447 NA non-coding downstream 5882 40058958 ~ 40059184 (+)
G1291457 NA non-coding downstream 11194 40064270 ~ 40064490 (+)
G1291466 NA non-coding downstream 15405 40068481 ~ 40068826 (+)
G1291485 NA non-coding downstream 25347 40078423 ~ 40078746 (+)
G1291488 NA non-coding downstream 28626 40081702 ~ 40082048 (+)
G1290614 NA other upstream 809877 39126272 ~ 39127009 (+)
G1290549 LOC106590036 other upstream 899227 39037005 ~ 39061248 (+)
G1289710 NA other upstream 1336645 38594880 ~ 38600241 (+)
G1289491 NA other upstream 1752883 38183436 ~ 38184003 (+)
G1287489 LOC106590045 other upstream 3426374 36509078 ~ 36510512 (+)
G1291464 NA other downstream 14482 40067558 ~ 40067907 (+)
G1293072 NA other downstream 1530297 41583216 ~ 41589030 (+)
G1293295 NA other downstream 1855958 41909034 ~ 41909611 (+)
G1294319 NA other downstream 2711777 42764853 ~ 42767937 (+)

Expression


Co-expression Network