LOC110490065 (LOC106580667)


Basic Information

Item Value
gene id LOC110490065
gene name LOC106580667
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41093530 ~ 41156857 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563201.2
GCTGAGATGATTCAAATGCGAATTTTCTTTCAGCTCAGTTGCTGCGGTACTGTATCCGTGTGGAGAGGGTAACTTGAAGAGACTAGGCTGTATTGGCTCGGAAATAACactccatttttttttatttcataaaACTGGCAATCCATCGTTTATAGACCTTTTGGGCATTATAACATTCTTACCATCTACGGTCATCAATTTGAACAACTCAAAGCCAACCATGTCGACCAAGGAGGAGACACCCGTAGCCGACGGAGACAAACCGCAGACTTCCTCCTGGAAAGATTCTATCTACAACCCACGAACAGGAGAGTTTATTGGCCGAACCGCTAAAAGCTGGGccCTGATATTGCTTTTCTACCTGGTCTTCTATGGGTTCCTGGCAGGGATGTTCACGCTCACCATGTGGGTCATGCTACAGACACTGGACGACAACATTCCTACGTACCGTGACCGAGTGGCCAGTCCAGGTTTGGTGATCAGGCCCCGGTCCTTGGACATCGTCTTCAACCGCACCGACACTAAGCAGTACGGCCAGTATGTCCAGCATCTGGAGAACTTCCTTCAGCAATACAACGACACTGTGCAGGAGAGGAACGAGCTGTGTATGGTGGGAGAGTACTATGAGCAGGATGATCAGGAGGAGAAGAAGGTGTGTCAGTTCAAGCGCAGTCTGCTCCGGCAGTGCTCTGGCCTGTCTGACACCACCTTTGGCTACACCGAGGGGAAACCCTGCGTCCTGGTCAAGATGAACAGGATCATTGGACTGAAACCGCGAGGGGACCCCTACATTAACTGCACAGCTAAGAGAGAAAGCCCCCTGCAGATGCAGTACTTCCCATCCGAGGGGCGGTTCGATAAGATGTACTTCCCTTATTACGGGAAAAATTTACATTCAACCTACGTTCAGCCACTGGTCGCGGTCAAGCTTCTGCTGACCAAGGAGGACTACAACAATGAGCTGACCGTGGAGTGTAAGATCGAGGGCTCCGACCTGCGGAACAGTGACGACCGTGACAAGTTCCTTGGGCGCGTCACGTTCAGGGTCAAAGTGGTCGAGTAGTGGTTCAGGAAAACCACCAGCGTTGCACAATGCCGCCTTTGAGTATAATCAATGCCCTcacccacctccacctcttcctccatccacTTCCCTCCCTCCAACTGGTGGATCAGGGGAAGCTACGGTAGCAGGGTTGTGTGCTCCTTATAAACTAACAACATGAACcccccctgaaacacacacaaatacacacctcTCACCCCCACCTCCATTAAAGTTAGTGGTAATGTAGCAACAACGTGCCATAGTAGGGACCTGTATATAGCTGTATTTGGAGCATTGAGTTGTGGTATTTCTCCCGTAGTGCTGTGCAGTCTGCTATGTGTGATGTGTTGTTTCTGTATGTACATACTTGATGGCTATAAACACTGTTTTTCTTTAGCTCACTATGTCTGAACGCTGTAAGAGATCAAACTAAGAAATAGATGAATAGCTGTAATTTAAGATTATTGATTAAGAGAATACATGAAGGATGAAAAATGCCCCAAAATATATCTGCTTATAATTCAACCTACCTGTCCAACATCTAAGGGAAGAGATTTTTACACCCCTATGGGAACTGTGCTTTGTACAGATGCCTTATGGTCGGTATGAGAACAAATCTTAAATAAAGATGATTTTAAAGATA

Function

NR:

description
sodium/potassium-transporting ATPase subunit beta-3-like isoform X1

GO: NA

KEGG:

id description
K01540 ATP1B, CD298; sodium/potassium-transporting ATPase subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563201.2 True 1691 mRNA 0.47 7 41093530 41156857

Neighbor

gene id symbol gene type direction distance location
tfdp2 LOC105026801 coding upstream 4992 41030376 ~ 41088538 (+)
LOC110490048 il-1racp coding upstream 960930 40089464 ~ 40132600 (+)
LOC110490053 fgf12 coding upstream 1040454 39936886 ~ 40053076 (+)
LOC110490050 LOC106612350 coding upstream 1164305 39845713 ~ 39929225 (+)
LOC110490049 LOC106612364 coding upstream 1409486 39649370 ~ 39684044 (+)
trnap-ugg-11 NA coding downstream 80129 41236986 ~ 41237057 (+)
trnap-ugg-12 NA coding downstream 81999 41238856 ~ 41238927 (+)
trnap-ugg-13 NA coding downstream 82934 41239791 ~ 41239862 (+)
trnap-ugg-14 NA coding downstream 83869 41240726 ~ 41240797 (+)
trnap-ugg-15 NA coding downstream 85739 41242596 ~ 41242667 (+)
G1292683 NA non-coding upstream 41087 41046102 ~ 41052443 (+)
G1292629 NA non-coding upstream 87911 41005309 ~ 41005619 (+)
G1292620 NA non-coding upstream 95742 40997238 ~ 40997788 (+)
G1292613 NA non-coding upstream 100596 40992687 ~ 40992934 (+)
G1292609 NA non-coding upstream 105907 40987421 ~ 40987623 (+)
G1292767 NA non-coding downstream 5837 41162694 ~ 41163121 (+)
G1292771 NA non-coding downstream 11270 41168127 ~ 41168355 (+)
G1292773 NA non-coding downstream 13312 41170169 ~ 41170519 (+)
G1292772 NA non-coding downstream 15152 41172009 ~ 41174350 (+)
G1292774 NA non-coding downstream 18607 41175464 ~ 41175720 (+)
G1291464 NA other upstream 1025623 40067558 ~ 40067907 (+)
G1290614 NA other upstream 1966521 39126272 ~ 39127009 (+)
G1290549 LOC106590036 other upstream 2055871 39037005 ~ 39061248 (+)
G1289710 NA other upstream 2493289 38594880 ~ 38600241 (+)
G1293072 NA other downstream 426516 41583216 ~ 41589030 (+)
G1293295 NA other downstream 752177 41909034 ~ 41909611 (+)
G1294319 NA other downstream 1607996 42764853 ~ 42767937 (+)
G1295348 LOC106602853 other downstream 2440067 43596924 ~ 43597464 (+)
G1295730 NA other downstream 2759321 43916178 ~ 43916479 (+)

Expression


Co-expression Network