trnap-ugg-46


Basic Information

Item Value
gene id trnap-ugg-46
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41281506 ~ 41281576 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnap-ugg-46
ggctcgttggtctaggggtatgattctcgctttgggtgcgagaggtcccggttcaaatcccggacgagccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnap-ugg-46 True 71 mRNA 0.61 1 41281506 41281576

Neighbor

gene id symbol gene type direction distance location
trnap-ugg-45 NA coding upstream 844 41280592 ~ 41280662 (+)
trnap-ugg-44 NA coding upstream 1776 41279659 ~ 41279730 (+)
trnap-ugg-43 NA coding upstream 2692 41278743 ~ 41278814 (+)
trnap-ugg-42 NA coding upstream 3627 41277808 ~ 41277879 (+)
trnap-ugg-41 NA coding upstream 5468 41275967 ~ 41276038 (+)
trnap-ugg-47 NA coding downstream 859 41282435 ~ 41282506 (+)
trnap-ugg-48 NA coding downstream 2704 41284280 ~ 41284351 (+)
trnap-ugg-49 NA coding downstream 3631 41285207 ~ 41285278 (+)
trnap-ugg-50 NA coding downstream 4565 41286141 ~ 41286212 (+)
trnap-ugg-51 NA coding downstream 5203 41286779 ~ 41286850 (+)
G1292941 NA non-coding upstream 17710 41262368 ~ 41263796 (+)
G1292932 NA non-coding upstream 46487 41234547 ~ 41235019 (+)
G1292922 NA non-coding upstream 55734 41225537 ~ 41225772 (+)
G1292792 NA non-coding upstream 83729 41197095 ~ 41197777 (+)
G1292775 LOC106612405 non-coding upstream 104443 41176206 ~ 41177063 (+)
G1292944 NA non-coding downstream 7328 41288904 ~ 41384912 (+)
trnap-cgg-68 NA non-coding downstream 79231 41360807 ~ 41381768 (+)
trnap-cgg-114 NA non-coding downstream 125397 41406973 ~ 41407518 (+)
trnap-cgg-115 NA non-coding downstream 126272 41407848 ~ 41408132 (+)
trnap-cgg-116 NA non-coding downstream 127173 41408749 ~ 41409089 (+)
LOC110490048 il-1racp other upstream 1150772 40089464 ~ 40132600 (+)
G1291464 NA other upstream 1213599 40067558 ~ 40067907 (+)
G1290614 NA other upstream 2154497 39126272 ~ 39127009 (+)
G1290549 LOC106590036 other upstream 2243847 39037005 ~ 39061248 (+)
G1289710 NA other upstream 2681265 38594880 ~ 38600241 (+)
G1293072 NA other downstream 301797 41583216 ~ 41589030 (+)
G1293295 NA other downstream 627458 41909034 ~ 41909611 (+)
G1294319 NA other downstream 1483277 42764853 ~ 42767937 (+)
G1295348 LOC106602853 other downstream 2315348 43596924 ~ 43597464 (+)
G1295730 NA other downstream 2634602 43916178 ~ 43916479 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) trnap-ugg_12 NA coding NC_047606.1 CM018552.1 4914316 ~ 4914386 (-)
tiger barb (Puntius tetrazona) trnap-ugg_54 NA coding NC_056718.1 CM032087.1 2161223 ~ 2161293 (-)
mexican tetra (Astyanax mexicanus) trnap-ugg_12 NA coding NC_035919.1 CM008322.1 10219216 ~ 10219284 (+)
mexican tetra (Astyanax mexicanus) trnap-ugg_44 NA misc NW_019171833.1 APWO02001431.1 31209 ~ 31279 (+)