trnap-cgg-88


Basic Information

Item Value
gene id trnap-cgg-88
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41379700 ~ 41379771 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnap-cgg-88
ggctcgttggtctaggggtatgattctcgcttcgggtgcgagaggtcccgggttcaaatcccggacgagccc

Function

NR:

description
PREDICTED: serine/threonine-protein kinase Nek3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnap-cgg-88 True 72 mRNA 0.63 1 41379700 41379771

Neighbor

gene id symbol gene type direction distance location
trnap-cgg-87 NA coding upstream 844 41378785 ~ 41378856 (+)
trnap-cgg-86 NA coding upstream 1717 41377910 ~ 41377983 (+)
trnap-cgg-85 NA coding upstream 2594 41377035 ~ 41377106 (+)
trnap-cgg-84 NA coding upstream 3473 41376156 ~ 41376227 (+)
trnap-cgg-83 NA coding upstream 4348 41375281 ~ 41375352 (+)
trnap-cgg-89 NA coding downstream 804 41380575 ~ 41380646 (+)
trnap-cgg-90 NA coding downstream 1680 41381451 ~ 41381522 (+)
trnap-cgg-91 NA coding downstream 2555 41382326 ~ 41382397 (+)
trnap-cgg-92 NA coding downstream 3430 41383201 ~ 41383272 (+)
trnap-cgg-93 NA coding downstream 4305 41384076 ~ 41384147 (+)
G1292941 NA non-coding upstream 115904 41262368 ~ 41263796 (+)
G1292932 NA non-coding upstream 144681 41234547 ~ 41235019 (+)
G1292922 NA non-coding upstream 153928 41225537 ~ 41225772 (+)
G1292792 NA non-coding upstream 181923 41197095 ~ 41197777 (+)
G1292775 LOC106612405 non-coding upstream 202637 41176206 ~ 41177063 (+)
trnap-cgg-114 NA non-coding downstream 27202 41406973 ~ 41407518 (+)
trnap-cgg-115 NA non-coding downstream 28077 41407848 ~ 41408132 (+)
trnap-cgg-116 NA non-coding downstream 28978 41408749 ~ 41409089 (+)
trnap-cgg-127 NA non-coding downstream 39237 41419008 ~ 41419424 (+)
trnap-cgg-152 NA non-coding downstream 64455 41444226 ~ 41444783 (+)
LOC110490048 il-1racp other upstream 1248966 40089464 ~ 40132600 (+)
G1291464 NA other upstream 1311793 40067558 ~ 40067907 (+)
G1290614 NA other upstream 2252691 39126272 ~ 39127009 (+)
G1290549 LOC106590036 other upstream 2342041 39037005 ~ 39061248 (+)
G1289710 NA other upstream 2779459 38594880 ~ 38600241 (+)
G1293072 NA other downstream 203602 41583216 ~ 41589030 (+)
G1293295 NA other downstream 529263 41909034 ~ 41909611 (+)
G1294319 NA other downstream 1385082 42764853 ~ 42767937 (+)
G1295348 LOC106602853 other downstream 2217153 43596924 ~ 43597464 (+)
G1295730 NA other downstream 2536407 43916178 ~ 43916479 (+)

Expression


Co-expression Network