trnap-cgg-108


Basic Information

Item Value
gene id trnap-cgg-108
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41398234 ~ 41398305 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnap-cgg-108
ggctcgttggtctaggggtatgattctcgcttcgggtgcgagaggtcccgggttcaaatcccggatgagccc

Function

NR:

description
PREDICTED: serine/threonine-protein kinase Nek3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnap-cgg-108 True 72 mRNA 0.61 1 41398234 41398305

Neighbor

gene id symbol gene type direction distance location
trnap-cgg-107 NA coding upstream 936 41397227 ~ 41397298 (+)
trnap-cgg-106 NA coding upstream 1807 41396356 ~ 41396427 (+)
trnap-cgg-105 NA coding upstream 2681 41395482 ~ 41395553 (+)
trnap-cgg-104 NA coding upstream 3555 41394608 ~ 41394679 (+)
trnap-cgg-103 NA coding upstream 4469 41393694 ~ 41393765 (+)
trnap-cgg-109 NA coding downstream 937 41399242 ~ 41399313 (+)
trnap-cgg-110 NA coding downstream 1804 41400109 ~ 41400180 (+)
trnap-cgg-111 NA coding downstream 3539 41401844 ~ 41401915 (+)
trnap-cgg-112 NA coding downstream 6155 41404460 ~ 41404531 (+)
trnap-cgg-113 NA coding downstream 7910 41406215 ~ 41406287 (+)
G1292939 NA non-coding upstream 13060 41258881 ~ 41385174 (+)
G1292944 NA non-coding upstream 13322 41288904 ~ 41384912 (+)
trnap-cgg-68 NA non-coding upstream 16466 41360807 ~ 41381768 (+)
G1292941 NA non-coding upstream 134438 41262368 ~ 41263796 (+)
G1292932 NA non-coding upstream 163215 41234547 ~ 41235019 (+)
trnap-cgg-114 NA non-coding downstream 8668 41406973 ~ 41407518 (+)
trnap-cgg-115 NA non-coding downstream 9543 41407848 ~ 41408132 (+)
trnap-cgg-116 NA non-coding downstream 10444 41408749 ~ 41409089 (+)
trnap-cgg-127 NA non-coding downstream 20703 41419008 ~ 41419424 (+)
trnap-cgg-152 NA non-coding downstream 45921 41444226 ~ 41444783 (+)
LOC110490048 il-1racp other upstream 1267500 40089464 ~ 40132600 (+)
G1291464 NA other upstream 1330327 40067558 ~ 40067907 (+)
G1290614 NA other upstream 2271225 39126272 ~ 39127009 (+)
G1290549 LOC106590036 other upstream 2360575 39037005 ~ 39061248 (+)
G1289710 NA other upstream 2797993 38594880 ~ 38600241 (+)
G1293072 NA other downstream 185068 41583216 ~ 41589030 (+)
G1293295 NA other downstream 510729 41909034 ~ 41909611 (+)
G1294319 NA other downstream 1366548 42764853 ~ 42767937 (+)
G1295348 LOC106602853 other downstream 2198619 43596924 ~ 43597464 (+)
G1295730 NA other downstream 2517873 43916178 ~ 43916479 (+)

Expression


Co-expression Network