XLOC_003156 (CT583672.1)


Basic Information

Item Value
gene id XLOC_003156
gene name CT583672.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2827553 ~ 2828675 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006228
ttttaaaatgagatgctaatggtctaatccgattcaatgatctatgctaagctaagctataagTGCTTTTTTGAgtgggatgctaatggtctaatccgattcaatgatctatgctaagctataaGTGCTTTtttagtgagatgctaatggtctaattcgattcaatgatttatgctaaggtaaaaagtgcttttttttgagatgctaatggtctaatcagattcaatgatttatgctaagctaagctaaaagtgctctctcCAGACTCGGAAAAtggctaaatggattcaaaaatgctaaaactcaacaGTCTAAATCAAGGGGAGGTgtaaatgaaaatttattttgaaaaaaaggtgGAGTGCTCCTTTAATACTTCTCCAAAATCTGTAACGAACTATCATGTTTAGCATAACTCGTTGTATAAGTAATACTGATGTTTATTATGTGAATGCCAGAGAAGAGTTTTGATCTCGAGGTTATTTTCATTACAGAGTCTTAAAATCGAAATGTTCAAATGTTGTACATACTCATACCAAAGAGTTGGTTTCCTCACGCGATCAGTGTTGTACAGTCTCCAGTCCCATTCTTTGTGTACAGTTTTGCTATGAATGACTGGCTTAAGGTAAACGTTTGAGAATCACTGATTCGGAGATGCCTTGAAATGAATTCGCGATGATCTGTGCAACTTTTGGAGCTTTCTCGTTTTCACCACAGCATTGCTTTGAGCATTAGGAGTTAGTCTGTGGATGAAGTGCTCTGTTGCAGTTTAACTGAACTT

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0000727 double-strand break repair via break-induced replication biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003688 DNA replication origin binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0043138 3'-5' DNA helicase activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000098691

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006228 True 781 lncRNA 0.36 2 2827553 2828675

Neighbor

gene id symbol gene type direction distance location
XLOC_003155 srpk1b coding upstream 991 2763168 ~ 2826562 (+)
XLOC_003154 mapk14b coding upstream 67180 2710530 ~ 2760373 (+)
XLOC_003153 tmem167b coding upstream 120525 2699951 ~ 2707028 (+)
XLOC_003152 b3galt6 coding upstream 136620 2685112 ~ 2690933 (+)
XLOC_003151 si:ch211-160o17.4 coding upstream 142958 2649664 ~ 2684595 (+)
XLOC_003157 kif21b coding downstream 26755 2855430 ~ 2974067 (+)
XLOC_003158 cpne5b coding downstream 176861 3005536 ~ 3195882 (+)
XLOC_003159 dre-mir-724 coding downstream 348011 3176686 ~ 3176770 (+)
XLOC_003160 NA coding downstream 374812 3203487 ~ 3206698 (+)
XLOC_003161 timeless coding downstream 383151 3211826 ~ 3272020 (+)
XLOC_003250 BX324177.11 misc downstream 8517128 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 8544211 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 8557687 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 8589358 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 8600718 11429393 ~ 11429689 (+)
XLOC_003149 FQ790208.1 non-coding upstream 211530 2615070 ~ 2616023 (+)
XLOC_003140 NA non-coding upstream 507198 2308209 ~ 2320355 (+)
XLOC_003139 NA non-coding upstream 621755 2198530 ~ 2205798 (+)
XLOC_003138 mir196c non-coding upstream 636823 2190621 ~ 2190730 (+)
XLOC_003133 NA non-coding upstream 874959 1951631 ~ 1952594 (+)
XLOC_003164 NA non-coding downstream 502438 3331113 ~ 3333714 (+)
XLOC_003169 NA non-coding downstream 787075 3615750 ~ 3735803 (+)
XLOC_003170 NA non-coding downstream 942591 3771266 ~ 3783125 (+)
XLOC_003132 NA non-coding upstream 830143 1935684 ~ 1997410 (+)

Expression


Co-expression Network