trnap-cgg-205


Basic Information

Item Value
gene id trnap-cgg-205
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41533280 ~ 41533841 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnap-cgg-205
ggctcgttggtctaggggtatgattctcgcttcgggtgcgagaggtcccgggttcaaaccCCGGATGAGCCC
>TU1475554
attttcgggatatgtcatgttttgactaacattgctctcgctctgccgcatttcaccaaagatgcagaggagtGACATCGGCGGTTAtggaggtttgagaagcatccagtgcaaaataagtgacatttctagtttaaaacagacagattccaatggggatttttaattttattcacgtaccggtgcgtcaatcggatcaaattaaatccaattgattttgatgtctactttttcatttttttaatctacatttagctctttcttcatttgtttcttgctgttacagctaatgaagattgaatctgaaagactcagcagatgaattacagagtatttgaactgaaacctgatcAACTGCtttgaagatagctatgctcacaagtataccaccaacactcacttgattcactgtggcctggcaccatcgacctgtcaatccaaatcctcaccgtcattgctggcgattGCAAAAAAACACCTTAGATAaagtggctcgttggtctaggggtatgattctcgcttcgggtgcgagaggtcccgggttcaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnap-cgg-205 False 72 mRNA 0.63 1 41533770 41533841
TU1475554 True 547 lncRNA 0.41 1 41533280 41533826

Neighbor

gene id symbol gene type direction distance location
trnap-cgg-204 NA coding upstream 6069 41527630 ~ 41527701 (+)
trnap-cgg-203 NA coding upstream 8737 41524962 ~ 41525033 (+)
trnap-cgg-202 NA coding upstream 17754 41515945 ~ 41516016 (+)
trnap-cgg-201 NA coding upstream 25987 41507712 ~ 41507783 (+)
trnap-cgg-200 NA coding upstream 26901 41506798 ~ 41506869 (+)
trnap-cgg-206 NA coding downstream 1780 41535621 ~ 41535692 (+)
trnap-cgg-207 NA coding downstream 3583 41537424 ~ 41537495 (+)
LOC110490071 clrn1 coding downstream 23807 41557648 ~ 41567851 (+)
LOC110490073 NA coding downstream 49494 41583335 ~ 41588120 (+)
LOC110490072 LOC106612410 coding downstream 54622 41588463 ~ 41625040 (+)
G1293027 NA non-coding upstream 3943 41529167 ~ 41529827 (+)
G1293025 NA non-coding upstream 4712 41528470 ~ 41529058 (+)
G1293020 NA non-coding upstream 20829 41512075 ~ 41512941 (+)
G1293019 NA non-coding upstream 23060 41510187 ~ 41510710 (+)
trnap-cgg-152 NA non-coding upstream 88987 41444226 ~ 41444783 (+)
G1293045 NA non-coding downstream 11057 41544898 ~ 41545622 (+)
G1293056 NA non-coding downstream 19693 41553534 ~ 41553948 (+)
G1293084 NA non-coding downstream 43988 41577829 ~ 41578216 (+)
G1293072 NA non-coding downstream 49375 41583216 ~ 41589030 (+)
G1293089 NA non-coding downstream 58177 41592018 ~ 41592641 (+)
LOC110490048 il-1racp other upstream 1403036 40089464 ~ 40132600 (+)
G1291464 NA other upstream 1465863 40067558 ~ 40067907 (+)
G1290614 NA other upstream 2406761 39126272 ~ 39127009 (+)
G1290549 LOC106590036 other upstream 2496111 39037005 ~ 39061248 (+)
G1289710 NA other upstream 2933529 38594880 ~ 38600241 (+)
G1293295 NA other downstream 375193 41909034 ~ 41909611 (+)
G1294319 NA other downstream 1231012 42764853 ~ 42767937 (+)
G1295348 LOC106602853 other downstream 2063083 43596924 ~ 43597464 (+)
G1295730 NA other downstream 2382337 43916178 ~ 43916479 (+)

Expression


Co-expression Network