LOC110490072 (LOC106612410)


Basic Information

Item Value
gene id LOC110490072
gene name LOC106612410
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41588463 ~ 41625040 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945536.1
CTGGTACTCTGTCTTGGAAAGCAACTTAATCAGAACCACACATTTACACTTTCGATGGAAACTTTGCGGGCTTGGACATCAAACCCGGAAGAGAACTGACGTTAATAAGCGAGACTAGCTGCGTTTACACAGACAGTGCGACCATGGAAGCAAAAGCACACAGTTGTCACCGACTGCCTGGGAAAACAtcaagaaagaggaggagggatgaaatcaatggagagatggagggagagcaggCCGTCAAGGTCCGACGATCCACAGTGggtCTGACAGATCCAGACCCATTTGCTGACCAGCTAGAACCAGTTACCGCTCCGTACGTGCGTGTCAGTATGGCGGAGGCATGCCAGGGCACCCCACAAGAGCGTCCAGTGCGGGTATATGCAGATGGGATCTTTGACATGTTCCATTCCGGCCACGCCCGAGCACTGATGCAAGCCAAGGGGCTCTTCCCAAACACCCATTTAATTGTCGGAGAAGGGGCAAAGGCATCTCTGAATGTCACTTTTGCCAAGTTATCCTCACTCCTATACATTCTGtccccaaggattggaaagctgccgcagtcatccccctcttcaaagATTGACTTTGTCGCCCATGACGATTACCCATATTCTTCTGCAGGAAGTGACGATGTTTACAAGCACATCAAGGCGGCAGGCATGTTCGCACCCACACAGCGGACAGAAGGCATCTCCACTTCTGACATCATCACCCGTATTGTCCGCGACTACGACGTGTACGCACGCAGAAACCTGCAGAGAGGCTACACTGCCAAAGAGCTCAATGTCAGCTTCATCAATGAGAAGAAGTACCACCTGCAGGAGCGTGTGGACAAAGTGAAGAAGAGGGTGAAGGATGTGGAGGAGCGATCCAAAGAGTTTGTGCAGAAGGTAGAGACAAAGAGCATCGACCTGATCCAGAAGTGGGAAGAGAAGTCCCGAGAGTTCATCGCCAACTTCCTTCAAATGTTTGGCCCAGAGGGAGCACTGAAGCACATGCTAAAGGAGGGCAAGGGGCGGATGCTGCAAGCCATAAGCCCCAGGCAGAGCCCCAACAGCAGCCCGACCAGAGAGCGCTCACCCTCTCCGCCGCCCTCCTTCCGTCTGCCCTTCTTCACCAagacctcccctccctcttcgcCCCACCACCTCAGTGGAGCAGACCGCATAAGCGAGGATGACGATTAGGAGCCTCCCTCcattcctttctctccctgtggCTGAGATGgtgcaggttagggttagggtaaataccATTTCATTTCAGTCAATttattgaattgaaatggaattgacccccagCCCAAGTGCTCACAAGGAATTGATAATTCACATGCTCTTGAATTAGGATGCCATGTTGCGTTTTTTTCCTATCCCGCTCACATTACTGGTTATCTTTACCAGGCCTCTAGTGTCAGTCAGGCCTTTGTCATGTTTAAAGGAAACCACAACACAATAGCACAGGAAGTTTAATCATAACTTTCTGTAAAACTGCTGTTCTTCGGGGTCACAGTGTTGTTATACACAaaatagattttttaaatgtttcatttATGATGTATAAAATGAACATGGGAAGGTGTCAGCCAATACGGGCGTGAGTGATGGGACACTCATTCGCTCACAAATTACTTGCATGTTCTTCCGACACACACACTACTATGGATTTGCCATGCTAAATCCATAGTAGCGCCAGAGAAAATTGAACAAGTGATAACCGGTACTTTCTGTAAATAATATCTTTCTACTTTCCAATTGATTTCATTCTGAATTTTCCTTATGGGAGTCACATGAAGTAATCGCTTAAGTCGTCTGGATTTTTAAACTTCTCTGGTGAAAGCATAATTCacatggcacgacaatgggtaaGAAGCTATTGAATCTACTAGGGGTTAACCATCGTACCGGAGTGTACGGAGCCCCTTCCCTGTTTCCCAGTCTAAAACTAGCCGGCACCTCATACCAGCTGTCTGCCTTTTTATCCCATAACAAAAGCTGGTTTCAAAcatggggagggaggggacatggGAGAGTTTCCTCCAATATGAAGCAGTAGAATgccatccctcctccccctccctctagtGATCACGCTACAGGAGCAACACAGCAGCCTGTTGTTATCAATGAAAGACATAGTGAGCCTCCCTCCCCTCATAGATGCATTCTCTTCAACTGCCTCCACAGAAAAAGACCACTTGGGTAGAAAGAAAGCCTTGTGCAGAATTCCGAATACCCCCATAGCCACCTACCACCCCTTAGGGCCTaggcactcctgtagatctgaaaggaTGGGATAGCTTTTGCGTTCTGGCTGGGTGGCATTTGCACTGTGTTGGATACACCTATTCAGTCCTTTTAGGCCTAGGACACACTGAGGTTGTACAACTGATGTACAATGCATTGGACTCGACAGTTGTGATGCAATGGATATTGTTTTTAACGGAAACGTTTAAAATATTGTTGTTTGGTGTCTCCAGAGTGGTTGGGTAAATATTTGTGTGCAGACAAATGCATAAAAATACCTGTTGTATCAAATGCGTTGTACAACCTGATGTGAACTAGGCCAGTAGACCTACAGGTGGCCTAAGGCTGTTCCACTTGCTCAGGAGTGAAGTTCCACTAgggacagatctaggatcagcttcctctcCCAATACACACTAATCCCATTAGTggagaaaatgctaaactgacccaagatcagggGAAACTTGATCCATTCTGCTTAATAACCTCCCGACTCTGTAACTGTAATTAGGTTGATCGAGGACTTTTGATTACATTGGTCACCTGATTAGTCACCAAGTTGAGTTGTTTTATCCTTGTATTTTGTCATTTACTTTTATTTAATATGTACTAAGTGTGTTGGTTTGCGTTAAAAGAGATCTACTGTATGTACTTTCATCTTGTATAGATGTCATTTTTGTATACCTCCTGGAAAAACCTTCTGCtgatttttcttatttttttgttgttgtagaaaatagtaattcCACTAATCAGTAATTCCAAATGCATTGCGCATCTCTACAACTTTATTGCAATAGATTCCAAATAATTGTTTTGGGGGGGtgatttattagattttttttccagaGTGCTGATGCTATGTCTAATCAGAGCTGCATTGTGGCATTCCTCCCAGACATtattttttttcaacagaattaaTGTTTAAGCTTAGCCAGAGTCTGTGGTTATTCAAATCGTTATATTGTGAATTGTATTCTCTGAAGCAAGCAACTTTAGGCACTTATACAATAGTATGTGAAATATTATTCTGCGTTTACACGGGCAGCTCAGCccgattctgatatttttttcactaattgttattttgaccaatcagatcatctctgaaaaagatctgatgtggaagaaagatcagaattggtctgcctgtgttgtgttcaattgaaatactgtagaattccattcattcctatggaggactgctcctactggggagtgccaatattgCCGACCTGTGGCTTCAaggcctctcaatggccaatataTGGCATCTGCAATCCAGGctttgtacagtgcatttggaaagtattcagaccacttgactatttctacattttgttaagttacagccttattctaaaatggatcaaatagttttttcccctcatcaatctacacacaataccccat

Function

NR:

description
choline-phosphate cytidylyltransferase A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945536.1 True 3674 mRNA 0.45 10 41588463 41625040

Neighbor

gene id symbol gene type direction distance location
LOC110490073 NA coding upstream 343 41583335 ~ 41588120 (+)
LOC110490071 clrn1 coding upstream 20612 41557648 ~ 41567851 (+)
trnap-cgg-207 NA coding upstream 50968 41537424 ~ 41537495 (+)
trnap-cgg-206 NA coding upstream 52771 41535621 ~ 41535692 (+)
trnap-cgg-205 NA coding upstream 54622 41533280 ~ 41533841 (+)
iqcg iqcg coding downstream 185203 41810243 ~ 41836130 (+)
LOC110490081 LOC106580643 coding downstream 300134 41925174 ~ 41951832 (+)
LOC118938919 NA coding downstream 394436 42019476 ~ 42023326 (+)
LOC110490085 LOC106612498 coding downstream 414914 42039954 ~ 42054610 (+)
LOC110490086 LOC106612440 coding downstream 529251 42154291 ~ 42255013 (+)
G1293084 NA non-coding upstream 10247 41577829 ~ 41578216 (+)
G1293056 NA non-coding upstream 34515 41553534 ~ 41553948 (+)
G1293045 NA non-coding upstream 42841 41544898 ~ 41545622 (+)
G1293027 NA non-coding upstream 58636 41529167 ~ 41529827 (+)
G1293074 NA non-coding downstream 21 41625061 ~ 41626045 (+)
G1293077 NA non-coding downstream 1082 41626122 ~ 41626379 (+)
G1293169 NA non-coding downstream 108436 41733476 ~ 41735494 (+)
G1293174 NA non-coding downstream 115306 41740346 ~ 41749693 (+)
G1293224 LOC106612432 non-coding downstream 180649 41805689 ~ 41810172 (+)
G1293072 NA other upstream 319 41583216 ~ 41589030 (+)
LOC110490048 il-1racp other upstream 1457729 40089464 ~ 40132600 (+)
G1291464 NA other upstream 1520556 40067558 ~ 40067907 (+)
G1290614 NA other upstream 2461454 39126272 ~ 39127009 (+)
G1290549 LOC106590036 other upstream 2550804 39037005 ~ 39061248 (+)
G1293295 NA other downstream 283994 41909034 ~ 41909611 (+)
G1294319 NA other downstream 1139813 42764853 ~ 42767937 (+)
G1295348 LOC106602853 other downstream 1971884 43596924 ~ 43597464 (+)
G1295730 NA other downstream 2291138 43916178 ~ 43916479 (+)
G1295845 NA other downstream 2404396 44029436 ~ 44029861 (+)

Expression


Co-expression Network